FvH4_4g37210
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0013465
Physical Location & Seq
Reverse (-)
33775830 .. 33780898
5069 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g37210.t2

Sequence Viewer

Length: 876 bp
ATGTCTGTGGAGGAAGCGGCTGCTAGCTCCTTGTGGACTTGGGAGCAGGACAAGGCATTTGAGAATGCCCTGGCAACTTATCCCGAGGATTCTCCAGATCGTTGGGAGAAAATTGCAGCTGATGTTGAAGGGATATCCGTAGAGGAGATAAAGCATCATTATGAGCTCTTAGTTGATGATATAAGTCAGATCGAAGCTGGTTGTATCCCGCTGCCTTGCTACAATTCTTCTTCCGACGGTTCAACAAGCCTTGCCAATGATGAAGGAACCAGTAAGAAGGGACACTATGGCAGCGAATCTAATCATGGAAGTAAGGCTTCAAGGGCAGATCAGGAACGGCGCAAGGGGGTTGCTTGGACGGAGGATGAACACAGGCAATTTCTCCTAGGCTTGGAAAAATATGGGAAAGGTGACTGGCGAAGTATATCACGGAACTTTGTGGTAACGAGAACACCTACACAAGTGGCAAGCCATGCACAGAAGTACTTCATACGTTTGAATTCAATGAACAAGGACAGAAGGCGATCAAGCATCCATGATATTACCAGTGTCGACAATGGAGAAGTTGCAACAATCCAAGGGCCTATCACTGGTCAATCAAACGGCCCAGCAGTAGGCTTATCTGGCTCTGGGAAATCAGCCAAACAATCTGCCGCTGGACCCCCGGGGGTTGGCATGTATGGAGCACCAAGTATCGGGCAACCAATTGGAGGACCTCTCGTTTCAGCTGTTGGCACACCAGTGAATCTTGTTGGCCCTTCTCCACACATGGCATATGGTGTGAGAGCCCCTATGCCTCCTGGAGCACTTGTTCCTGGGGCACCAATGAACATGCCCCCCATGACATATCCTATGCCTCACACGGCTCATAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

292

Amino Acids

31.12

Weight (kDa)

6.06

Isoelectric Point (pI)

50.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 12 - 54 2.6e-06 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 118 - 163 4.8e-12 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013465)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08520
fragaria_vesca FvH4_4g37210 FvH4_4g37210
malus_domestica MD00G1126800.v1.1 MD13G1002700.v1.1
prunus_persica Prupe.1G349700_v2.0.a1
pyrus_communis pycom13g00230 pycom16g00150
rosa_chinensis RchiOBHm_Chr4g0446981
rosa_laevigata RLG00000005614
rosa_multiflora Rmu_sc0001753.1_g000003
rosa_roxburghii Rroxscaffold_5G00387320
rosa_rugosa Rorug04G0376800
rosa_samantha Rh4AG438400 Rh4BG447400 Rh4CG464500 Rh4DG446000
rosa_wichuraiana Rw4G037490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 820
AccI GTMKAC 1 cut(s) 552
AciI CCGC 3 cut(s) 17, 209, 654
AcsI RAATTY 1 cut(s) 499
AfaI GTAC 1 cut(s) 485
AfiI CCNNNNNNNGG 6 cut(s) 391, 590, 614, 671, 695, 710
AgsI TTSAA 5 cut(s) 128, 243, 321, 499, 504
AjnI CCWGG 3 cut(s) 69, 799, 814
AleI CACNNNNGTG 1 cut(s) 740
AloI GAACNNNNNNTCC 2 cut(s) 795, 827
AluBI AGCT 5 cut(s) 27, 119, 166, 197, 728
AluI AGCT 5 cut(s) 27, 119, 166, 197, 728
Alw21I GWGCWC 3 cut(s) 168, 688, 808
Ama87I CYCGRG 2 cut(s) 83, 664
AoxI GGCC 3 cut(s) 581, 604, 754
ApeKI GCWGC 4 cut(s) 20, 116, 211, 291
ApoI RAATTY 1 cut(s) 499
ArsI GACNNNNNNTTYG 2 cut(s) 41, 73
Asp700I GAANNNNTTC 1 cut(s) 485
AspA2I CCTAGG 1 cut(s) 385
AspLEI GCGC 1 cut(s) 342
AspS9I GGNCC 5 cut(s) 581, 605, 659, 713, 755
AsuC2I CCSGG 2 cut(s) 665, 666
AsuHPI GGTGA 1 cut(s) 422
AsuNHI GCTAGC 1 cut(s) 23
AvaI CYCGRG 2 cut(s) 83, 664
AvaII GGWCC 2 cut(s) 659, 713
AvrII CCTAGG 1 cut(s) 385
BaeGI GKGCMC 1 cut(s) 823
BanI GGYRCC 1 cut(s) 820
BanII GRGCYC 2 cut(s) 168, 790
Bbv12I GWGCWC 3 cut(s) 168, 688, 808
BbvI GCAGC 4 cut(s) 7, 128, 198, 303
BceAI ACGGC 2 cut(s) 353, 619
BciT130I CCWGG 3 cut(s) 71, 801, 816
BciVI GTATCC 1 cut(s) 215
BcnI CCSGG 2 cut(s) 665, 666
BfaI CTAG 2 cut(s) 24, 386
BfuI GTATCC 1 cut(s) 215
BisI GCNGC 6 cut(s) 18, 21, 117, 212, 292, 654
BlnI CCTAGG 1 cut(s) 385
BlsI GCNGC 6 cut(s) 19, 22, 118, 213, 293, 655
BmcAI AGTACT 1 cut(s) 485
Bme1390I CCNGG 5 cut(s) 71, 665, 666, 801, 816
Bme18I GGWCC 2 cut(s) 659, 713
BmeT110I CYCGRG 2 cut(s) 83, 664
BmgT120I GGNCC 5 cut(s) 581, 605, 659, 713, 755
BmiI GGNNCC 3 cut(s) 268, 661, 822
BmrFI CCNGG 5 cut(s) 71, 665, 666, 801, 816
BmsI GCATC 2 cut(s) 163, 540
BmtI GCTAGC 1 cut(s) 27
BplI GAGNNNNNCTC 2 cut(s) 702, 734
BpmI CTGGAG 2 cut(s) 78, 822
BpuMI CCSGG 2 cut(s) 665, 666
BsaJI CCNNGG 8 cut(s) 69, 84, 385, 577, 663, 664, 665, 815
BsaXI ACNNNNNCTCC 2 cut(s) 795, 825
Bsc4I CCNNNNNNNGG 6 cut(s) 391, 590, 614, 671, 695, 710
Bse1I ACTGG 5 cut(s) 270, 419, 546, 595, 740
BseBI CCWGG 3 cut(s) 71, 801, 816
BseDI CCNNGG 8 cut(s) 69, 84, 385, 577, 663, 664, 665, 815
BseGI GGATG 2 cut(s) 370, 531
BseLI CCNNNNNNNGG 6 cut(s) 391, 590, 614, 671, 695, 710
BseNI ACTGG 5 cut(s) 270, 419, 546, 595, 740
BseRI GAGGAG 1 cut(s) 158
BseSI GKGCMC 1 cut(s) 823
BseXI GCAGC 4 cut(s) 7, 128, 198, 303
BseYI CCCAGC 1 cut(s) 607
BshFI GGCC 3 cut(s) 583, 606, 756
BshNI GGYRCC 1 cut(s) 820
BsiHKAI GWGCWC 3 cut(s) 168, 688, 808
BsiHKCI CYCGRG 2 cut(s) 83, 664
BsiSI CCGG 1 cut(s) 665
BslFI GGGAC 1 cut(s) 294
BslI CCNNNNNNNGG 6 cut(s) 391, 590, 614, 671, 695, 710
BsmFI GGGAC 1 cut(s) 294
BsmI GAATGC 1 cut(s) 70
BsnI GGCC 3 cut(s) 583, 606, 756
BsoBI CYCGRG 2 cut(s) 83, 664
Bsp1286I GDGCHC 5 cut(s) 168, 688, 790, 808, 823
Bsp143I GATC 4 cut(s) 97, 189, 328, 524
BspACI CCGC 3 cut(s) 17, 209, 654
BspANI GGCC 3 cut(s) 583, 606, 756
BspLI GGNNCC 3 cut(s) 268, 661, 822
BspOI GCTAGC 1 cut(s) 27
BspT107I GGYRCC 1 cut(s) 820
BsrI ACTGG 5 cut(s) 270, 419, 546, 595, 740
BssECI CCNNGG 8 cut(s) 69, 84, 385, 577, 663, 664, 665, 815
BssMI GATC 4 cut(s) 97, 189, 328, 524
BssT1I CCWWGG 2 cut(s) 385, 577
Bst2UI CCWGG 3 cut(s) 71, 801, 816
Bst4CI ACNGT 1 cut(s) 239
BstAPI GCANNNNNTGC 1 cut(s) 473
BstC8I GCNNGC 2 cut(s) 25, 469
BstDEI CTNAG 1 cut(s) 169
BstF5I GGATG 2 cut(s) 370, 531
BstHHI GCGC 1 cut(s) 342
BstKTI GATC 4 cut(s) 100, 192, 331, 527
BstMBI GATC 4 cut(s) 97, 189, 328, 524
BstMWI GCNNNNNNNGC 3 cut(s) 323, 473, 624
BstNI CCWGG 3 cut(s) 71, 801, 816
BstNSI RCATGY 2 cut(s) 679, 835
BstSCI CCNGG 5 cut(s) 69, 663, 664, 799, 814
BstSLI GKGCMC 1 cut(s) 823
BstV1I GCAGC 4 cut(s) 7, 128, 198, 303
BstXI CCANNNNNNTGG 1 cut(s) 102
BsuI GTATCC 1 cut(s) 215
BsuRI GGCC 3 cut(s) 583, 606, 756
BtsCI GGATG 2 cut(s) 370, 531
BtsIMutI CAGTG 3 cut(s) 553, 588, 747
Cac8I GCNNGC 2 cut(s) 25, 469
CfoI GCGC 1 cut(s) 342
Cfr13I GGNCC 5 cut(s) 581, 605, 659, 713, 755
Cfr9I CCCGGG 1 cut(s) 664
Csp6I GTAC 1 cut(s) 484
CviAII CATG 7 cut(s) 305, 473, 536, 676, 769, 832, 841
CviQI GTAC 1 cut(s) 484
DdeI CTNAG 1 cut(s) 169
DpnI GATC 4 cut(s) 99, 191, 330, 526
DpnII GATC 4 cut(s) 97, 189, 328, 524
Ecl136II GAGCTC 1 cut(s) 166
Eco130I CCWWGG 2 cut(s) 385, 577
Eco24I GRGCYC 2 cut(s) 168, 790
Eco32I GATATC 1 cut(s) 135
Eco47I GGWCC 2 cut(s) 659, 713
Eco53kI GAGCTC 1 cut(s) 166
Eco88I CYCGRG 2 cut(s) 83, 664
EcoICRI GAGCTC 1 cut(s) 166
EcoO109I RGGNCCY 2 cut(s) 581, 713
EcoRI GAATTC 1 cut(s) 499
EcoRII CCWGG 3 cut(s) 69, 799, 814
EcoRV GATATC 1 cut(s) 135
EcoT14I CCWWGG 2 cut(s) 385, 577
EcoT38I GRGCYC 2 cut(s) 168, 790
ErhI CCWWGG 2 cut(s) 385, 577
FaeI CATG 7 cut(s) 308, 476, 539, 679, 772, 835, 844
FalI AAGNNNNNCTT 2 cut(s) 301, 333
FaqI GGGAC 1 cut(s) 294
FatI CATG 7 cut(s) 304, 472, 535, 675, 768, 831, 840
FauI CCCGC 1 cut(s) 216
FauNDI CATATG 1 cut(s) 775
FblI GTMKAC 1 cut(s) 552
Fnu4HI GCNGC 6 cut(s) 18, 21, 117, 212, 292, 654
FokI GGATG 2 cut(s) 377, 518
FriOI GRGCYC 2 cut(s) 168, 790
Fsp4HI GCNGC 6 cut(s) 18, 21, 117, 212, 292, 654
FspBI CTAG 2 cut(s) 24, 386
GlaI GCGC 1 cut(s) 341
GluI GCNGC 6 cut(s) 18, 21, 117, 212, 292, 654
GsaI CCCAGC 1 cut(s) 611
GsuI CTGGAG 2 cut(s) 78, 822
HaeIII GGCC 3 cut(s) 583, 606, 756
HapII CCGG 1 cut(s) 665
HhaI GCGC 1 cut(s) 342
Hin1II CATG 7 cut(s) 308, 476, 539, 679, 772, 835, 844
Hin6I GCGC 1 cut(s) 340
HinP1I GCGC 1 cut(s) 340
HincII GTYRAC 1 cut(s) 553
HindII GTYRAC 1 cut(s) 553
HinfI GANTC 3 cut(s) 89, 296, 745
HpaII CCGG 1 cut(s) 665
HphI GGTGA 1 cut(s) 422
Hpy166II GTNNAC 2 cut(s) 36, 553
Hpy188I TCNGA 2 cut(s) 189, 235
Hpy188III TCNNGA 3 cut(s) 83, 95, 332
Hpy8I GTNNAC 2 cut(s) 36, 553
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 5 cut(s) 122, 257, 271, 513, 768
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4IV ACGT 1 cut(s) 493
HpyCH4V TGCA 3 cut(s) 116, 476, 569
HpyF10VI GCNNNNNNNGC 3 cut(s) 323, 473, 624
HpyF3I CTNAG 1 cut(s) 169
HpySE526I ACGT 1 cut(s) 493
Hsp92II CATG 7 cut(s) 308, 476, 539, 679, 772, 835, 844
HspAI GCGC 1 cut(s) 340
Kzo9I GATC 4 cut(s) 97, 189, 328, 524
LmnI GCTCC 4 cut(s) 32, 43, 683, 803
Lsp1109I GCAGC 4 cut(s) 7, 128, 198, 303
LweI GCATC 2 cut(s) 163, 540
MaeI CTAG 2 cut(s) 24, 386
MaeII ACGT 1 cut(s) 493
MaeIII GTNAC 2 cut(s) 410, 442
MalI GATC 4 cut(s) 99, 191, 330, 526
MboI GATC 4 cut(s) 97, 189, 328, 524
MboII GAAGA 2 cut(s) 219, 222
MfeI CAATTG 1 cut(s) 705
MhlI GDGCHC 5 cut(s) 168, 688, 790, 808, 823
MluCI AATT 5 cut(s) 111, 223, 377, 499, 705
MmeI TCCRAC 1 cut(s) 258
MnlI CCTC 8 cut(s) 4, 79, 136, 355, 704, 726, 807, 867
MroXI GAANNNNTTC 1 cut(s) 485
MslI CAYNNNNRTG 2 cut(s) 159, 740
MspA1I CMGCKG 4 cut(s) 119, 211, 656, 728
MspI CCGG 1 cut(s) 665
MspR9I CCNGG 5 cut(s) 71, 665, 666, 801, 816
MunI CAATTG 1 cut(s) 705
Mva1269I GAATGC 1 cut(s) 70
MvaI CCWGG 3 cut(s) 71, 801, 816
MwoI GCNNNNNNNGC 3 cut(s) 323, 473, 624
NciI CCSGG 2 cut(s) 665, 666
NdeI CATATG 1 cut(s) 775
NdeII GATC 4 cut(s) 97, 189, 328, 524
NheI GCTAGC 1 cut(s) 23
NlaIII CATG 7 cut(s) 308, 476, 539, 679, 772, 835, 844
NlaIV GGNNCC 3 cut(s) 268, 661, 822
NmuCI GTSAC 1 cut(s) 410
NspI RCATGY 2 cut(s) 679, 835
OliI CACNNNNGTG 1 cut(s) 740
PctI GAATGC 1 cut(s) 70
PdmI GAANNNNTTC 1 cut(s) 485
PfeI GAWTC 3 cut(s) 89, 296, 745
PfoI TCCNGGA 1 cut(s) 799
PkrI GCNGC 6 cut(s) 19, 22, 118, 213, 293, 655
PpuMI RGGWCCY 1 cut(s) 713
Psp124BI GAGCTC 1 cut(s) 168
Psp5II RGGWCCY 1 cut(s) 713
Psp6I CCWGG 3 cut(s) 69, 799, 814
PspFI CCCAGC 1 cut(s) 607
PspGI CCWGG 3 cut(s) 69, 799, 814
PspN4I GGNNCC 3 cut(s) 268, 661, 822
PspPI GGNCC 5 cut(s) 581, 605, 659, 713, 755
PspPPI RGGWCCY 1 cut(s) 713
PvuII CAGCTG 2 cut(s) 119, 728
RsaI GTAC 1 cut(s) 485
RsaNI GTAC 1 cut(s) 484
RseI CAYNNNNRTG 2 cut(s) 159, 740
SacI GAGCTC 1 cut(s) 168
SalI GTCGAC 1 cut(s) 551
SatI GCNGC 6 cut(s) 18, 21, 117, 212, 292, 654
Sau3AI GATC 4 cut(s) 97, 189, 328, 524
Sau96I GGNCC 5 cut(s) 581, 605, 659, 713, 755
ScaI AGTACT 1 cut(s) 485
ScrFI CCNGG 5 cut(s) 71, 665, 666, 801, 816
SduI GDGCHC 5 cut(s) 168, 688, 790, 808, 823
SfaNI GCATC 2 cut(s) 163, 540
SinI GGWCC 2 cut(s) 659, 713
SmaI CCCGGG 1 cut(s) 666
SmiMI CAYNNNNRTG 2 cut(s) 159, 740
Sse9I AATT 5 cut(s) 111, 223, 377, 499, 705
SsiI CCGC 3 cut(s) 17, 209, 654
SspMI CTAG 2 cut(s) 24, 386
SstI GAGCTC 1 cut(s) 168
StyD4I CCNGG 5 cut(s) 69, 663, 664, 799, 814
StyI CCWWGG 2 cut(s) 385, 577
TaaI ACNGT 1 cut(s) 239
TaiI ACGT 1 cut(s) 496
TaqI TCGA 2 cut(s) 192, 552
TasI AATT 5 cut(s) 111, 223, 377, 499, 705
TatI WGTACW 1 cut(s) 483
TauI GCSGC 2 cut(s) 20, 656
TfiI GAWTC 3 cut(s) 89, 296, 745
TscAI CASTG 3 cut(s) 553, 595, 747
TseFI GTSAC 1 cut(s) 410
TseI GCWGC 4 cut(s) 20, 116, 211, 291
Tsp45I GTSAC 1 cut(s) 410
TspDTI ATGAA 5 cut(s) 276, 381, 478, 521, 842
TspGWI ACGGA 3 cut(s) 127, 374, 445
TspMI CCCGGG 1 cut(s) 664
TspRI CASTG 3 cut(s) 553, 595, 747
VpaK11BI GGWCC 2 cut(s) 659, 713
XapI RAATTY 1 cut(s) 499
XceI RCATGY 2 cut(s) 679, 835
XmaI CCCGGG 1 cut(s) 664
XmaJI CCTAGG 1 cut(s) 385
XmiI GTMKAC 1 cut(s) 552
XmnI GAANNNNTTC 1 cut(s) 485
XspI CTAG 2 cut(s) 24, 386
ZrmI AGTACT 1 cut(s) 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.