Rmu_sc0001753.1_g000003
MYB Family

Transcription factor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001753.1
Physical Location & Seq
Forward (+)
17757 .. 22146
4390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001753.1_g000003.1.cds

Sequence Viewer

Length: 1287 bp
atgactgtggacgaagcggttgctagcgccttgtggacttgggagcaggataaggcatttgagaatgccctggcaacttatcctgaggatgctccagatcgttgggacaaaattgcagctgatgtagaagggaaaaacctagaggagataaagcatcattatgaactcttacttgatgatataagccagatcgaagctggttgtattccactgccttgctacaattcttcttccgagggttcaacaagtcatgccagtgatgaaggaaccagtaagaagggacactacagcagcgaatctaatcatggaagtaaggcttcaagggcagatcaggaacgccgtaaggggattgcttggacagaggatgaacacaggcaatttcttctaggattggaaaaatatgggaaaggtgattggcgaagtatatcacggaactttgtggtaacaagaacacccacccaagtggcaagccatgcacaaaagtatttcatacgtctgaattcaatgaacaaggacagaaggcgatcaagcatccatgacatcaccagtgtcaacaatggagaaattgcggcaatccaagggccgatcactggtcaaggaaatggttctgcagtaggcccatcaggctctgcgaaatcaaccaaacaatctgctgctggacccccgggggttggcatgtatggtgcacccagtatcgggcaaccaattggaggacctcttgtctcagctgttggcacaccagtgaatcttgctggccattccccacacatggcatatggtgtgagagcccctatgcctcctggagcacttgttcctggggcaccaatgaacatgccccccatgacatatcctatgcctcacacggctcatagtagtagcgtttggagcgtctctgagattgtggaagctgtcaatggcaggatcctgaaatggggtcctgtcctcctggaaccatttctacagacaccagaaccctccaacccaaaccaatgcttcttcgccatttccggccaaaacttggacgcccacgattgcaattatcccgagatcaaggctgcgagaactgggacgttgaaaccgaggctgatactctggagtgactcactggcagtgtgggaaagaccatatatgatagctctggtttatgagagtcatggcattggcatgaccgaattggggtccttgatcgggattcctaacacgtactgccgggagggactgcggttttggagtggccggcaagggagagatactggagcttgcgaggacaggcgcttcacactttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

428

Amino Acids

46.51

Weight (kDa)

6.17

Isoelectric Point (pI)

43.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013465)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 820
AccB7I CCANNNNNTGG 1 cut(s) 1018
AciI CCGC 3 cut(s) 17, 569, 1222
AclWI GGATC 2 cut(s) 916, 929
AcoI YGGCCR 3 cut(s) 754, 1009, 1234
AcsI RAATTY 1 cut(s) 499
AcyI GRCGYC 1 cut(s) 1023
AfaI GTAC 1 cut(s) 1205
AflIII ACRYGT 1 cut(s) 1200
AgsI TTSAA 4 cut(s) 243, 321, 504, 1075
AhdI GACNNNNNGTC 1 cut(s) 719
AjnI CCWGG 4 cut(s) 69, 799, 814, 945
AleI CACNNNNGTG 2 cut(s) 461, 740
AloI GAACNNNNNNTCC 2 cut(s) 795, 827
AluBI AGCT 6 cut(s) 119, 197, 728, 908, 1136, 1259
AluI AGCT 6 cut(s) 119, 197, 728, 908, 1136, 1259
Alw21I GWGCWC 2 cut(s) 688, 808
Alw26I GTCTC 2 cut(s) 727, 895
Alw44I GTGCAC 1 cut(s) 684
AlwI GGATC 2 cut(s) 916, 929
AlwNI CAGNNNCTG 1 cut(s) 629
Ama87I CYCGRG 2 cut(s) 664, 1043
AoxI GGCC 5 cut(s) 581, 616, 754, 1009, 1234
ApaLI GTGCAC 1 cut(s) 684
ApeKI GCWGC 4 cut(s) 116, 291, 653, 1055
ApoI RAATTY 1 cut(s) 499
ArsI GACNNNNNNTTYG 2 cut(s) 1209, 1241
Asp700I GAANNNNTTC 2 cut(s) 604, 954
AspLEI GCGC 2 cut(s) 29, 1275
AspS9I GGNCC 6 cut(s) 581, 617, 659, 713, 935, 1179
AsuC2I CCSGG 3 cut(s) 665, 666, 1211
AsuHPI GGTGA 2 cut(s) 422, 535
AsuNHI GCTAGC 1 cut(s) 23
AvaI CYCGRG 2 cut(s) 664, 1043
AvaII GGWCC 4 cut(s) 659, 713, 935, 1179
AxyI CCTNAGG 1 cut(s) 84
BaeGI GKGCMC 2 cut(s) 688, 823
BalI TGGCCA 1 cut(s) 756
BamHI GGATCC 1 cut(s) 921
BanI GGYRCC 1 cut(s) 820
BanII GRGCYC 1 cut(s) 790
BarI GAAGNNNNNNTAC 2 cut(s) 269, 301
Bbv12I GWGCWC 2 cut(s) 688, 808
BbvI GCAGC 4 cut(s) 128, 303, 640, 1042
BccI CCATC 1 cut(s) 628
BceAI ACGGC 2 cut(s) 324, 879
BcgI CGANNNNNNTGC 1 cut(s) 36
BciT130I CCWGG 4 cut(s) 71, 801, 816, 947
BcnI CCSGG 3 cut(s) 665, 666, 1211
BcoDI GTCTC 2 cut(s) 727, 895
BfaI CTAG 3 cut(s) 24, 140, 386
BfmI CTRYAG 3 cut(s) 286, 609, 959
BfoI RGCGCY 2 cut(s) 30, 1276
BglI GCCNNNNNGGC 1 cut(s) 624
BisI GCNGC 5 cut(s) 117, 292, 570, 654, 1056
BlsI GCNGC 5 cut(s) 118, 293, 571, 655, 1057
Bme1390I CCNGG 7 cut(s) 71, 665, 666, 801, 816, 947, 1211
Bme18I GGWCC 4 cut(s) 659, 713, 935, 1179
BmeRI GACNNNNNGTC 1 cut(s) 719
BmeT110I CYCGRG 2 cut(s) 664, 1043
BmgT120I GGNCC 6 cut(s) 581, 617, 659, 713, 935, 1179
BmiI GGNNCC 7 cut(s) 268, 661, 822, 923, 936, 951, 1180
BmrFI CCNGG 7 cut(s) 71, 665, 666, 801, 816, 947, 1211
BmrI ACTGGG 2 cut(s) 684, 1074
BmsI GCATC 3 cut(s) 79, 163, 540
BmtI GCTAGC 1 cut(s) 27
BmuI ACTGGG 2 cut(s) 684, 1074
BpmI CTGGAG 4 cut(s) 78, 822, 1114, 1275
BpuMI CCSGG 3 cut(s) 665, 666, 1211
BsaAI YACGTR 1 cut(s) 1203
BsaHI GRCGYC 1 cut(s) 1023
BsaJI CCNNGG 8 cut(s) 69, 234, 577, 663, 664, 665, 815, 1079
BsaXI ACNNNNNCTCC 2 cut(s) 795, 825
Bse118I RCCGGY 1 cut(s) 1236
Bse1I ACTGG 9 cut(s) 255, 270, 546, 595, 690, 740, 1069, 1110, 1258
Bse21I CCTNAGG 1 cut(s) 84
BseBI CCWGG 4 cut(s) 71, 801, 816, 947
BseDI CCNNGG 8 cut(s) 69, 234, 577, 663, 664, 665, 815, 1079
BseGI GGATG 3 cut(s) 94, 370, 531
BseMII CTCAG 3 cut(s) 75, 738, 885
BseNI ACTGG 9 cut(s) 255, 270, 546, 595, 690, 740, 1069, 1110, 1258
BseRI GAGGAG 1 cut(s) 158
BseSI GKGCMC 2 cut(s) 688, 823
BseXI GCAGC 4 cut(s) 128, 303, 640, 1042
BshFI GGCC 5 cut(s) 583, 618, 756, 1011, 1236
BshNI GGYRCC 1 cut(s) 820
BsiHKAI GWGCWC 2 cut(s) 688, 808
BsiHKCI CYCGRG 2 cut(s) 664, 1043
BsiSI CCGG 4 cut(s) 665, 1008, 1210, 1237
BslFI GGGAC 4 cut(s) 119, 294, 1081, 1230
BsmAI GTCTC 2 cut(s) 727, 895
BsmBI CGTCTC 1 cut(s) 895
BsmFI GGGAC 4 cut(s) 119, 294, 1081, 1230
BsmI GAATGC 1 cut(s) 70
BsnI GGCC 5 cut(s) 583, 618, 756, 1011, 1236
BsoBI CYCGRG 2 cut(s) 664, 1043
Bsp1286I GDGCHC 4 cut(s) 688, 790, 808, 823
Bsp143I GATC 8 cut(s) 97, 189, 328, 524, 585, 921, 1047, 1185
BspACI CCGC 3 cut(s) 17, 569, 1222
BspANI GGCC 5 cut(s) 583, 618, 756, 1011, 1236
BspCNI CTCAG 3 cut(s) 76, 737, 886
BspLI GGNNCC 7 cut(s) 268, 661, 822, 923, 936, 951, 1180
BspMAI CTGCAG 1 cut(s) 613
BspOI GCTAGC 1 cut(s) 27
BspPI GGATC 2 cut(s) 916, 929
BspT107I GGYRCC 1 cut(s) 820
BsrFI RCCGGY 1 cut(s) 1236
BsrI ACTGG 9 cut(s) 255, 270, 546, 595, 690, 740, 1069, 1110, 1258
BssAI RCCGGY 1 cut(s) 1236
BssECI CCNNGG 8 cut(s) 69, 234, 577, 663, 664, 665, 815, 1079
BssMI GATC 8 cut(s) 97, 189, 328, 524, 585, 921, 1047, 1185
BssNI GRCGYC 1 cut(s) 1023
BssT1I CCWWGG 1 cut(s) 577
Bst2UI CCWGG 4 cut(s) 71, 801, 816, 947
Bst4CI ACNGT 1 cut(s) 7
BstACI GRCGYC 1 cut(s) 1023
BstAPI GCANNNNNTGC 1 cut(s) 473
BstBAI YACGTR 1 cut(s) 1203
BstC8I GCNNGC 5 cut(s) 25, 469, 754, 1238, 1261
BstDEI CTNAG 3 cut(s) 84, 724, 894
BstF5I GGATG 3 cut(s) 94, 370, 531
BstH2I RGCGCY 2 cut(s) 30, 1276
BstHHI GCGC 2 cut(s) 29, 1275
BstKTI GATC 8 cut(s) 100, 192, 331, 527, 588, 924, 1050, 1188
BstMAI GTCTC 2 cut(s) 727, 895
BstMBI GATC 8 cut(s) 97, 189, 328, 524, 585, 921, 1047, 1185
BstMWI GCNNNNNNNGC 4 cut(s) 323, 473, 624, 885
BstNI CCWGG 4 cut(s) 71, 801, 816, 947
BstNSI RCATGY 2 cut(s) 679, 835
BstSCI CCNGG 7 cut(s) 69, 663, 664, 799, 814, 945, 1209
BstSFI CTRYAG 3 cut(s) 286, 609, 959
BstSLI GKGCMC 2 cut(s) 688, 823
BstV1I GCAGC 4 cut(s) 128, 303, 640, 1042
BstX2I RGATCY 1 cut(s) 921
BstXI CCANNNNNNTGG 2 cut(s) 102, 463
BstYI RGATCY 1 cut(s) 921
Bsu36I CCTNAGG 1 cut(s) 84
BsuRI GGCC 5 cut(s) 583, 618, 756, 1011, 1236
BtsCI GGATG 3 cut(s) 94, 370, 531
BtsI GCAGTG 2 cut(s) 209, 1116
BtsIMutI CAGTG 7 cut(s) 209, 262, 553, 588, 747, 1103, 1116
Cac8I GCNNGC 5 cut(s) 25, 469, 754, 1238, 1261
CaiI CAGNNNCTG 1 cut(s) 629
CfoI GCGC 2 cut(s) 29, 1275
Cfr10I RCCGGY 1 cut(s) 1236
Cfr13I GGNCC 6 cut(s) 581, 617, 659, 713, 935, 1179
Cfr9I CCCGGG 1 cut(s) 664
CseI GACGC 2 cut(s) 877, 1031
Csp6I GTAC 1 cut(s) 1204
CviQI GTAC 1 cut(s) 1204
DdeI CTNAG 3 cut(s) 84, 724, 894
DpnI GATC 8 cut(s) 99, 191, 330, 526, 587, 923, 1049, 1187
DpnII GATC 8 cut(s) 97, 189, 328, 524, 585, 921, 1047, 1185
DriI GACNNNNNGTC 1 cut(s) 719
EaeI YGGCCR 3 cut(s) 754, 1009, 1234
Eam1105I GACNNNNNGTC 1 cut(s) 719
Eco130I CCWWGG 1 cut(s) 577
Eco24I GRGCYC 1 cut(s) 790
Eco47I GGWCC 4 cut(s) 659, 713, 935, 1179
Eco81I CCTNAGG 1 cut(s) 84
Eco88I CYCGRG 2 cut(s) 664, 1043
EcoO109I RGGNCCY 3 cut(s) 713, 935, 1179
EcoRI GAATTC 1 cut(s) 499
EcoRII CCWGG 4 cut(s) 69, 799, 814, 945
EcoT14I CCWWGG 1 cut(s) 577
EcoT38I GRGCYC 1 cut(s) 790
ErhI CCWWGG 1 cut(s) 577
Esp3I CGTCTC 1 cut(s) 895
FalI AAGNNNNNCTT 2 cut(s) 301, 333
FaqI GGGAC 4 cut(s) 119, 294, 1081, 1230
FauNDI CATATG 1 cut(s) 775
Fnu4HI GCNGC 5 cut(s) 117, 292, 570, 654, 1056
FokI GGATG 3 cut(s) 101, 377, 518
FriOI GRGCYC 1 cut(s) 790
Fsp4HI GCNGC 5 cut(s) 117, 292, 570, 654, 1056
FspBI CTAG 3 cut(s) 24, 140, 386
GlaI GCGC 2 cut(s) 28, 1274
GluI GCNGC 5 cut(s) 117, 292, 570, 654, 1056
GsuI CTGGAG 4 cut(s) 78, 822, 1114, 1275
HaeII RGCGCY 2 cut(s) 30, 1276
HaeIII GGCC 5 cut(s) 583, 618, 756, 1011, 1236
HapII CCGG 4 cut(s) 665, 1008, 1210, 1237
HgaI GACGC 2 cut(s) 877, 1031
HhaI GCGC 2 cut(s) 29, 1275
Hin1I GRCGYC 1 cut(s) 1023
Hin6I GCGC 2 cut(s) 27, 1273
HinP1I GCGC 2 cut(s) 27, 1273
HincII GTYRAC 1 cut(s) 553
HindII GTYRAC 1 cut(s) 553
HinfI GANTC 5 cut(s) 296, 745, 1100, 1150, 1192
HpaII CCGG 4 cut(s) 665, 1008, 1210, 1237
HphI GGTGA 2 cut(s) 422, 535
Hpy166II GTNNAC 4 cut(s) 10, 36, 553, 686
Hpy188I TCNGA 3 cut(s) 235, 498, 895
Hpy188III TCNNGA 7 cut(s) 83, 95, 332, 925, 1043, 1093, 1189
Hpy8I GTNNAC 4 cut(s) 10, 36, 553, 686
HpyAV CCTTC 4 cut(s) 122, 257, 271, 513
HpyCH4III ACNGT 1 cut(s) 7
HpyCH4IV ACGT 3 cut(s) 493, 1070, 1202
HpyCH4V TGCA 5 cut(s) 116, 476, 611, 686, 1035
HpyF10VI GCNNNNNNNGC 4 cut(s) 323, 473, 624, 885
HpyF3I CTNAG 3 cut(s) 84, 724, 894
HpySE526I ACGT 3 cut(s) 493, 1070, 1202
Hsp92I GRCGYC 1 cut(s) 1023
HspAI GCGC 2 cut(s) 27, 1273
KroI GCCGGC 1 cut(s) 1236
KroNI GCCGGC 1 cut(s) 1238
Kzo9I GATC 8 cut(s) 97, 189, 328, 524, 585, 921, 1047, 1185
LmnI GCTCC 5 cut(s) 43, 97, 803, 885, 1256
Lsp1109I GCAGC 4 cut(s) 128, 303, 640, 1042
LweI GCATC 3 cut(s) 79, 163, 540
MaeI CTAG 3 cut(s) 24, 140, 386
MaeII ACGT 3 cut(s) 493, 1070, 1202
MaeIII GTNAC 2 cut(s) 442, 1097
MalI GATC 8 cut(s) 99, 191, 330, 526, 587, 923, 1049, 1187
MboI GATC 8 cut(s) 97, 189, 328, 524, 585, 921, 1047, 1185
MboII GAAGA 4 cut(s) 219, 222, 374, 988
MfeI CAATTG 1 cut(s) 705
MflI RGATCY 1 cut(s) 921
MhlI GDGCHC 4 cut(s) 688, 790, 808, 823
MlsI TGGCCA 1 cut(s) 756
MluCI AATT 8 cut(s) 111, 223, 377, 499, 564, 705, 1036, 1172
MluNI TGGCCA 1 cut(s) 756
MlyI GAGTC 2 cut(s) 1094, 1159
MmeI TCCRAC 1 cut(s) 1002
Mox20I TGGCCA 1 cut(s) 756
MroNI GCCGGC 1 cut(s) 1236
MroXI GAANNNNTTC 2 cut(s) 604, 954
MscI TGGCCA 1 cut(s) 756
MslI CAYNNNNRTG 5 cut(s) 159, 255, 461, 740, 1163
Msp20I TGGCCA 1 cut(s) 756
MspA1I CMGCKG 2 cut(s) 119, 728
MspI CCGG 4 cut(s) 665, 1008, 1210, 1237
MspR9I CCNGG 7 cut(s) 71, 665, 666, 801, 816, 947, 1211
MunI CAATTG 1 cut(s) 705
Mva1269I GAATGC 1 cut(s) 70
MvaI CCWGG 4 cut(s) 71, 801, 816, 947
MwoI GCNNNNNNNGC 4 cut(s) 323, 473, 624, 885
NaeI GCCGGC 1 cut(s) 1238
NciI CCSGG 3 cut(s) 665, 666, 1211
NdeI CATATG 1 cut(s) 775
NdeII GATC 8 cut(s) 97, 189, 328, 524, 585, 921, 1047, 1185
NgoMIV GCCGGC 1 cut(s) 1236
NheI GCTAGC 1 cut(s) 23
NlaIV GGNNCC 7 cut(s) 268, 661, 822, 923, 936, 951, 1180
NmuCI GTSAC 1 cut(s) 1097
NspI RCATGY 2 cut(s) 679, 835
OliI CACNNNNGTG 2 cut(s) 461, 740
PcsI WCGNNNNNNNCGW 1 cut(s) 1076
PctI GAATGC 1 cut(s) 70
PdiI GCCGGC 1 cut(s) 1238
PdmI GAANNNNTTC 2 cut(s) 604, 954
PfeI GAWTC 3 cut(s) 296, 745, 1192
PflMI CCANNNNNTGG 1 cut(s) 1018
PfoI TCCNGGA 2 cut(s) 799, 945
PkrI GCNGC 5 cut(s) 118, 293, 571, 655, 1057
PleI GAGTC 2 cut(s) 1094, 1158
PpsI GAGTC 2 cut(s) 1094, 1158
Ppu21I YACGTR 1 cut(s) 1203
PpuMI RGGWCCY 3 cut(s) 713, 935, 1179
Psp5II RGGWCCY 3 cut(s) 713, 935, 1179
Psp6I CCWGG 4 cut(s) 69, 799, 814, 945
PspGI CCWGG 4 cut(s) 69, 799, 814, 945
PspN4I GGNNCC 7 cut(s) 268, 661, 822, 923, 936, 951, 1180
PspPI GGNCC 6 cut(s) 581, 617, 659, 713, 935, 1179
PspPPI RGGWCCY 3 cut(s) 713, 935, 1179
PsrI GAACNNNNNNTAC 2 cut(s) 942, 974
PstI CTGCAG 1 cut(s) 613
PstNI CAGNNNCTG 1 cut(s) 629
PsuI RGATCY 1 cut(s) 921
PvuII CAGCTG 2 cut(s) 119, 728
RsaI GTAC 1 cut(s) 1205
RsaNI GTAC 1 cut(s) 1204
RseI CAYNNNNRTG 5 cut(s) 159, 255, 461, 740, 1163
SatI GCNGC 5 cut(s) 117, 292, 570, 654, 1056
Sau3AI GATC 8 cut(s) 97, 189, 328, 524, 585, 921, 1047, 1185
Sau96I GGNCC 6 cut(s) 581, 617, 659, 713, 935, 1179
SchI GAGTC 2 cut(s) 1094, 1159
ScrFI CCNGG 7 cut(s) 71, 665, 666, 801, 816, 947, 1211
SduI GDGCHC 4 cut(s) 688, 790, 808, 823
SfaNI GCATC 3 cut(s) 79, 163, 540
SfcI CTRYAG 3 cut(s) 286, 609, 959
SinI GGWCC 4 cut(s) 659, 713, 935, 1179
SmaI CCCGGG 1 cut(s) 666
SmiMI CAYNNNNRTG 5 cut(s) 159, 255, 461, 740, 1163
Sse9I AATT 8 cut(s) 111, 223, 377, 499, 564, 705, 1036, 1172
SsiI CCGC 3 cut(s) 17, 569, 1222
SspMI CTAG 3 cut(s) 24, 140, 386
StyD4I CCNGG 7 cut(s) 69, 663, 664, 799, 814, 945, 1209
StyI CCWWGG 1 cut(s) 577
TaaI ACNGT 1 cut(s) 7
TaiI ACGT 3 cut(s) 496, 1073, 1205
TaqI TCGA 1 cut(s) 192
TaqII GACCGA 1 cut(s) 1184
TasI AATT 8 cut(s) 111, 223, 377, 499, 564, 705, 1036, 1172
TauI GCSGC 1 cut(s) 572
TfiI GAWTC 3 cut(s) 296, 745, 1192
TscAI CASTG 7 cut(s) 216, 262, 553, 595, 747, 1110, 1116
TseFI GTSAC 1 cut(s) 1097
TseI GCWGC 4 cut(s) 116, 291, 653, 1055
Tsp45I GTSAC 1 cut(s) 1097
TspDTI ATGAA 6 cut(s) 177, 276, 381, 478, 521, 842
TspGWI ACGGA 1 cut(s) 445
TspMI CCCGGG 1 cut(s) 664
TspRI CASTG 7 cut(s) 216, 262, 553, 595, 747, 1110, 1116
Van91I CCANNNNNTGG 1 cut(s) 1018
VneI GTGCAC 1 cut(s) 684
VpaK11BI GGWCC 4 cut(s) 659, 713, 935, 1179
XapI RAATTY 1 cut(s) 499
XceI RCATGY 2 cut(s) 679, 835
XcmI CCANNNNNNNNNTGG 1 cut(s) 194
XmaI CCCGGG 1 cut(s) 664
XmnI GAANNNNTTC 2 cut(s) 604, 954
XspI CTAG 3 cut(s) 24, 140, 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.