Rw4G037490
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0013465
Physical Location & Seq
Reverse (-)
64062480 .. 64066777
4298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G037490.1

Sequence Viewer

Length: 873 bp
ATGACTGTGGACGAAGCGGTTGCTAGCGCCTTGTGGACTTGGGAGCAGGATAAGGCATTTGAGAATGCCCTGGCAACTTATCCTGAGGATGCTCCAGATCGTTGGGACAAAATTGCAGCTGATGTAGAAGGGAAAAACCTAGAGGAGATAAAGCATCATTATGAACTCTTACTTGATGATATAAGCCAGATCGAAGCTGGTTGTATTCCACTGCCTTGCTACAATTCTTCTTCCGAGGGTTCAACAAGTCATGCCAGTGATGAAGGAACCAGTAAGAAGGGACACTACAGCAGCGAATCTAATCATGGAAGTAAGGCTTCAAGGGCAGATCAGGAACGCCGTAAGGGGATTGCTTGGACAGAGGATGAACACAGGCAATTTCTTCTAGGATTGGAAAAATATGGGAAAGGTGATTGGCGAAGTATATCACGGAACTTTGTGGTAACAAGAACACCCACCCAAGTGGCAAGCCATGCACAAAAGTATTTCATACGTCTGAATTCAATGAACAAGGACAGAAGGCGATCAAGCATCCATGACATCACCAGTGTCAACAATGGAGAAATTGCGGCAATCCAAGGGCCGATCACTGGTCAAGGAAATGGTTCTGCAGTAGGCCCATCAGGCTCTGCGAAATCAACCAAACAATCTGCTGGACCCCCGGGGGTTGGCATGTATGGTGCACCAAGTATCGGGCAACCAATTGGAGGACCTCTTGTCTCAGCTGTTGGCACACCAGTGAATCTTGCTGGCCATTCCCCACACATGGCATATGGTGTGAGAGCCCCTATGCCTCCTGGAGCACTTGTTCCAGGGGCACCAATGAACATGCCCCCCATGACATATCCTATGCCTCACACGGCTCATAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

290

Amino Acids

31.14

Weight (kDa)

6.45

Isoelectric Point (pI)

45.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 12 - 55 1.4e-06 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 118 - 163 9.3e-12 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013465)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08520
fragaria_vesca FvH4_4g37210 FvH4_4g37210
malus_domestica MD00G1126800.v1.1 MD13G1002700.v1.1
prunus_persica Prupe.1G349700_v2.0.a1
pyrus_communis pycom13g00230 pycom16g00150
rosa_chinensis RchiOBHm_Chr4g0446981
rosa_laevigata RLG00000005614
rosa_multiflora Rmu_sc0001753.1_g000003
rosa_roxburghii Rroxscaffold_5G00387320
rosa_rugosa Rorug04G0376800
rosa_samantha Rh4AG438400 Rh4BG447400 Rh4CG464500 Rh4DG446000
rosa_wichuraiana Rw4G037490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 817
AciI CCGC 2 cut(s) 17, 569
AcoI YGGCCR 1 cut(s) 751
AcsI RAATTY 1 cut(s) 499
AfiI CCNNNNNNNGG 5 cut(s) 590, 668, 692, 707, 766
AgsI TTSAA 3 cut(s) 243, 321, 504
AhdI GACNNNNNGTC 1 cut(s) 716
AjnI CCWGG 3 cut(s) 69, 796, 811
AleI CACNNNNGTG 2 cut(s) 461, 737
AloI GAACNNNNNNTCC 2 cut(s) 792, 824
AluBI AGCT 3 cut(s) 119, 197, 725
AluI AGCT 3 cut(s) 119, 197, 725
Alw21I GWGCWC 2 cut(s) 685, 805
Alw26I GTCTC 1 cut(s) 724
Alw44I GTGCAC 1 cut(s) 681
AlwNI CAGNNNCTG 1 cut(s) 629
Ama87I CYCGRG 1 cut(s) 661
AoxI GGCC 3 cut(s) 581, 616, 751
ApaLI GTGCAC 1 cut(s) 681
ApeKI GCWGC 2 cut(s) 116, 291
ApoI RAATTY 1 cut(s) 499
Asp700I GAANNNNTTC 1 cut(s) 604
AspLEI GCGC 1 cut(s) 29
AspS9I GGNCC 4 cut(s) 581, 617, 656, 710
AsuC2I CCSGG 2 cut(s) 662, 663
AsuHPI GGTGA 2 cut(s) 422, 535
AsuNHI GCTAGC 1 cut(s) 23
AvaI CYCGRG 1 cut(s) 661
AvaII GGWCC 2 cut(s) 656, 710
AxyI CCTNAGG 1 cut(s) 84
BaeGI GKGCMC 2 cut(s) 685, 820
BalI TGGCCA 1 cut(s) 753
BanI GGYRCC 1 cut(s) 817
BanII GRGCYC 1 cut(s) 787
BarI GAAGNNNNNNTAC 2 cut(s) 269, 301
Bbv12I GWGCWC 2 cut(s) 685, 805
BbvI GCAGC 2 cut(s) 128, 303
BccI CCATC 1 cut(s) 628
BceAI ACGGC 1 cut(s) 324
BcgI CGANNNNNNTGC 1 cut(s) 36
BciT130I CCWGG 3 cut(s) 71, 798, 813
BcnI CCSGG 2 cut(s) 662, 663
BcoDI GTCTC 1 cut(s) 724
BfaI CTAG 3 cut(s) 24, 140, 386
BfmI CTRYAG 2 cut(s) 286, 609
BfoI RGCGCY 1 cut(s) 30
BglI GCCNNNNNGGC 1 cut(s) 624
BisI GCNGC 3 cut(s) 117, 292, 570
BlsI GCNGC 3 cut(s) 118, 293, 571
Bme1390I CCNGG 5 cut(s) 71, 662, 663, 798, 813
Bme18I GGWCC 2 cut(s) 656, 710
BmeRI GACNNNNNGTC 1 cut(s) 716
BmeT110I CYCGRG 1 cut(s) 661
BmgT120I GGNCC 4 cut(s) 581, 617, 656, 710
BmiI GGNNCC 3 cut(s) 268, 658, 819
BmrFI CCNGG 5 cut(s) 71, 662, 663, 798, 813
BmsI GCATC 3 cut(s) 79, 163, 540
BmtI GCTAGC 1 cut(s) 27
BpmI CTGGAG 2 cut(s) 78, 819
BpuMI CCSGG 2 cut(s) 662, 663
BsaJI CCNNGG 7 cut(s) 69, 234, 577, 660, 661, 662, 812
BsaXI ACNNNNNCTCC 2 cut(s) 792, 822
Bsc4I CCNNNNNNNGG 5 cut(s) 590, 668, 692, 707, 766
Bse1I ACTGG 5 cut(s) 255, 270, 546, 595, 737
Bse21I CCTNAGG 1 cut(s) 84
BseBI CCWGG 3 cut(s) 71, 798, 813
BseDI CCNNGG 7 cut(s) 69, 234, 577, 660, 661, 662, 812
BseGI GGATG 3 cut(s) 94, 370, 531
BseLI CCNNNNNNNGG 5 cut(s) 590, 668, 692, 707, 766
BseMII CTCAG 2 cut(s) 75, 735
BseNI ACTGG 5 cut(s) 255, 270, 546, 595, 737
BseRI GAGGAG 1 cut(s) 158
BseSI GKGCMC 2 cut(s) 685, 820
BseXI GCAGC 2 cut(s) 128, 303
BshFI GGCC 3 cut(s) 583, 618, 753
BshNI GGYRCC 1 cut(s) 817
BsiHKAI GWGCWC 2 cut(s) 685, 805
BsiHKCI CYCGRG 1 cut(s) 661
BsiSI CCGG 1 cut(s) 662
BslFI GGGAC 2 cut(s) 119, 294
BslI CCNNNNNNNGG 5 cut(s) 590, 668, 692, 707, 766
BsmAI GTCTC 1 cut(s) 724
BsmFI GGGAC 2 cut(s) 119, 294
BsmI GAATGC 1 cut(s) 70
BsnI GGCC 3 cut(s) 583, 618, 753
BsoBI CYCGRG 1 cut(s) 661
Bsp1286I GDGCHC 4 cut(s) 685, 787, 805, 820
Bsp143I GATC 5 cut(s) 97, 189, 328, 524, 585
BspACI CCGC 2 cut(s) 17, 569
BspANI GGCC 3 cut(s) 583, 618, 753
BspCNI CTCAG 2 cut(s) 76, 734
BspLI GGNNCC 3 cut(s) 268, 658, 819
BspMAI CTGCAG 1 cut(s) 613
BspOI GCTAGC 1 cut(s) 27
BspT107I GGYRCC 1 cut(s) 817
BsrI ACTGG 5 cut(s) 255, 270, 546, 595, 737
BssECI CCNNGG 7 cut(s) 69, 234, 577, 660, 661, 662, 812
BssMI GATC 5 cut(s) 97, 189, 328, 524, 585
BssT1I CCWWGG 1 cut(s) 577
Bst2UI CCWGG 3 cut(s) 71, 798, 813
Bst4CI ACNGT 1 cut(s) 7
BstAPI GCANNNNNTGC 1 cut(s) 473
BstC8I GCNNGC 3 cut(s) 25, 469, 751
BstDEI CTNAG 2 cut(s) 84, 721
BstF5I GGATG 3 cut(s) 94, 370, 531
BstH2I RGCGCY 1 cut(s) 30
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 5 cut(s) 100, 192, 331, 527, 588
BstMAI GTCTC 1 cut(s) 724
BstMBI GATC 5 cut(s) 97, 189, 328, 524, 585
BstMWI GCNNNNNNNGC 3 cut(s) 323, 473, 624
BstNI CCWGG 3 cut(s) 71, 798, 813
BstNSI RCATGY 2 cut(s) 676, 832
BstSCI CCNGG 5 cut(s) 69, 660, 661, 796, 811
BstSFI CTRYAG 2 cut(s) 286, 609
BstSLI GKGCMC 2 cut(s) 685, 820
BstV1I GCAGC 2 cut(s) 128, 303
BstXI CCANNNNNNTGG 2 cut(s) 102, 463
Bsu36I CCTNAGG 1 cut(s) 84
BsuRI GGCC 3 cut(s) 583, 618, 753
BtsCI GGATG 3 cut(s) 94, 370, 531
BtsI GCAGTG 1 cut(s) 209
BtsIMutI CAGTG 5 cut(s) 209, 262, 553, 588, 744
Cac8I GCNNGC 3 cut(s) 25, 469, 751
CaiI CAGNNNCTG 1 cut(s) 629
CfoI GCGC 1 cut(s) 29
Cfr13I GGNCC 4 cut(s) 581, 617, 656, 710
Cfr9I CCCGGG 1 cut(s) 661
CviAII CATG 8 cut(s) 251, 305, 473, 536, 673, 766, 829, 838
DdeI CTNAG 2 cut(s) 84, 721
DpnI GATC 5 cut(s) 99, 191, 330, 526, 587
DpnII GATC 5 cut(s) 97, 189, 328, 524, 585
DriI GACNNNNNGTC 1 cut(s) 716
EaeI YGGCCR 1 cut(s) 751
Eam1105I GACNNNNNGTC 1 cut(s) 716
Eco130I CCWWGG 1 cut(s) 577
Eco24I GRGCYC 1 cut(s) 787
Eco47I GGWCC 2 cut(s) 656, 710
Eco81I CCTNAGG 1 cut(s) 84
Eco88I CYCGRG 1 cut(s) 661
EcoO109I RGGNCCY 1 cut(s) 710
EcoRI GAATTC 1 cut(s) 499
EcoRII CCWGG 3 cut(s) 69, 796, 811
EcoT14I CCWWGG 1 cut(s) 577
EcoT38I GRGCYC 1 cut(s) 787
ErhI CCWWGG 1 cut(s) 577
FaeI CATG 8 cut(s) 254, 308, 476, 539, 676, 769, 832, 841
FalI AAGNNNNNCTT 2 cut(s) 301, 333
FaqI GGGAC 2 cut(s) 119, 294
FatI CATG 8 cut(s) 250, 304, 472, 535, 672, 765, 828, 837
FauNDI CATATG 1 cut(s) 772
Fnu4HI GCNGC 3 cut(s) 117, 292, 570
FokI GGATG 3 cut(s) 101, 377, 518
FriOI GRGCYC 1 cut(s) 787
Fsp4HI GCNGC 3 cut(s) 117, 292, 570
FspBI CTAG 3 cut(s) 24, 140, 386
GlaI GCGC 1 cut(s) 28
GluI GCNGC 3 cut(s) 117, 292, 570
GsuI CTGGAG 2 cut(s) 78, 819
HaeII RGCGCY 1 cut(s) 30
HaeIII GGCC 3 cut(s) 583, 618, 753
HapII CCGG 1 cut(s) 662
HhaI GCGC 1 cut(s) 29
Hin1II CATG 8 cut(s) 254, 308, 476, 539, 676, 769, 832, 841
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HincII GTYRAC 1 cut(s) 553
HindII GTYRAC 1 cut(s) 553
HinfI GANTC 2 cut(s) 296, 742
HpaII CCGG 1 cut(s) 662
HphI GGTGA 2 cut(s) 422, 535
Hpy166II GTNNAC 4 cut(s) 10, 36, 553, 683
Hpy188I TCNGA 2 cut(s) 235, 498
Hpy188III TCNNGA 3 cut(s) 83, 95, 332
Hpy8I GTNNAC 4 cut(s) 10, 36, 553, 683
HpyAV CCTTC 4 cut(s) 122, 257, 271, 513
HpyCH4III ACNGT 1 cut(s) 7
HpyCH4IV ACGT 1 cut(s) 493
HpyCH4V TGCA 4 cut(s) 116, 476, 611, 683
HpyF10VI GCNNNNNNNGC 3 cut(s) 323, 473, 624
HpyF3I CTNAG 2 cut(s) 84, 721
HpySE526I ACGT 1 cut(s) 493
Hsp92II CATG 8 cut(s) 254, 308, 476, 539, 676, 769, 832, 841
HspAI GCGC 1 cut(s) 27
Kzo9I GATC 5 cut(s) 97, 189, 328, 524, 585
LmnI GCTCC 3 cut(s) 43, 97, 800
Lsp1109I GCAGC 2 cut(s) 128, 303
LweI GCATC 3 cut(s) 79, 163, 540
MaeI CTAG 3 cut(s) 24, 140, 386
MaeII ACGT 1 cut(s) 493
MaeIII GTNAC 1 cut(s) 442
MalI GATC 5 cut(s) 99, 191, 330, 526, 587
MboI GATC 5 cut(s) 97, 189, 328, 524, 585
MboII GAAGA 3 cut(s) 219, 222, 374
MfeI CAATTG 1 cut(s) 702
MhlI GDGCHC 4 cut(s) 685, 787, 805, 820
MlsI TGGCCA 1 cut(s) 753
MluCI AATT 6 cut(s) 111, 223, 377, 499, 564, 702
MluNI TGGCCA 1 cut(s) 753
MnlI CCTC 8 cut(s) 79, 136, 229, 355, 701, 723, 804, 864
Mox20I TGGCCA 1 cut(s) 753
MroXI GAANNNNTTC 1 cut(s) 604
MscI TGGCCA 1 cut(s) 753
MslI CAYNNNNRTG 4 cut(s) 159, 255, 461, 737
Msp20I TGGCCA 1 cut(s) 753
MspA1I CMGCKG 2 cut(s) 119, 725
MspI CCGG 1 cut(s) 662
MspR9I CCNGG 5 cut(s) 71, 662, 663, 798, 813
MunI CAATTG 1 cut(s) 702
Mva1269I GAATGC 1 cut(s) 70
MvaI CCWGG 3 cut(s) 71, 798, 813
MwoI GCNNNNNNNGC 3 cut(s) 323, 473, 624
NciI CCSGG 2 cut(s) 662, 663
NdeI CATATG 1 cut(s) 772
NdeII GATC 5 cut(s) 97, 189, 328, 524, 585
NheI GCTAGC 1 cut(s) 23
NlaIII CATG 8 cut(s) 254, 308, 476, 539, 676, 769, 832, 841
NlaIV GGNNCC 3 cut(s) 268, 658, 819
NspI RCATGY 2 cut(s) 676, 832
OliI CACNNNNGTG 2 cut(s) 461, 737
PctI GAATGC 1 cut(s) 70
PdmI GAANNNNTTC 1 cut(s) 604
PfeI GAWTC 2 cut(s) 296, 742
PfoI TCCNGGA 1 cut(s) 796
PkrI GCNGC 3 cut(s) 118, 293, 571
PpuMI RGGWCCY 1 cut(s) 710
Psp5II RGGWCCY 1 cut(s) 710
Psp6I CCWGG 3 cut(s) 69, 796, 811
PspGI CCWGG 3 cut(s) 69, 796, 811
PspN4I GGNNCC 3 cut(s) 268, 658, 819
PspPI GGNCC 4 cut(s) 581, 617, 656, 710
PspPPI RGGWCCY 1 cut(s) 710
PstI CTGCAG 1 cut(s) 613
PstNI CAGNNNCTG 1 cut(s) 629
PvuII CAGCTG 2 cut(s) 119, 725
RseI CAYNNNNRTG 4 cut(s) 159, 255, 461, 737
SatI GCNGC 3 cut(s) 117, 292, 570
Sau3AI GATC 5 cut(s) 97, 189, 328, 524, 585
Sau96I GGNCC 4 cut(s) 581, 617, 656, 710
ScrFI CCNGG 5 cut(s) 71, 662, 663, 798, 813
SduI GDGCHC 4 cut(s) 685, 787, 805, 820
SetI ASST 8 cut(s) 121, 141, 199, 412, 496, 715, 727, 872
SfaNI GCATC 3 cut(s) 79, 163, 540
SfcI CTRYAG 2 cut(s) 286, 609
SinI GGWCC 2 cut(s) 656, 710
SmaI CCCGGG 1 cut(s) 663
SmiMI CAYNNNNRTG 4 cut(s) 159, 255, 461, 737
Sse9I AATT 6 cut(s) 111, 223, 377, 499, 564, 702
SsiI CCGC 2 cut(s) 17, 569
SspMI CTAG 3 cut(s) 24, 140, 386
StyD4I CCNGG 5 cut(s) 69, 660, 661, 796, 811
StyI CCWWGG 1 cut(s) 577
TaaI ACNGT 1 cut(s) 7
TaiI ACGT 1 cut(s) 496
TaqI TCGA 1 cut(s) 192
TasI AATT 6 cut(s) 111, 223, 377, 499, 564, 702
TauI GCSGC 1 cut(s) 572
TfiI GAWTC 2 cut(s) 296, 742
TscAI CASTG 5 cut(s) 216, 262, 553, 595, 744
TseI GCWGC 2 cut(s) 116, 291
TspDTI ATGAA 6 cut(s) 177, 276, 381, 478, 521, 839
TspGWI ACGGA 1 cut(s) 445
TspMI CCCGGG 1 cut(s) 661
TspRI CASTG 5 cut(s) 216, 262, 553, 595, 744
VneI GTGCAC 1 cut(s) 681
VpaK11BI GGWCC 2 cut(s) 656, 710
XapI RAATTY 1 cut(s) 499
XceI RCATGY 2 cut(s) 676, 832
XcmI CCANNNNNNNNNTGG 1 cut(s) 194
XmaI CCCGGG 1 cut(s) 661
XmnI GAANNNNTTC 1 cut(s) 604
XspI CTAG 3 cut(s) 24, 140, 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.