pycom13g00230
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0013465
Physical Location & Seq
Forward (+)
155820 .. 158572
2753 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g00230.1

Sequence Viewer

Length: 873 bp
ATGATTGTGGAGGAAGTGGTCAGTAGCTCCTTATGGACTCGAGAGCAGGATAAGTCATTTGAGAATGCCCTTGCAACTTATCCTGAGGATTCTTCAGATCGGTGGGAGAAAATTGTAGCTGATGTACATGGGAAAACCCTAGAGGAGATAAAACATCATTATGACCTCTTACTTGAGGATTTAACCCAGATCGAAGCTGGTGTTGTGCCGCTGCCTTGCTACAATTCTTCAGAGGGTTCAACTAGCCATGCCAGTGATGAAGGAACCAATAAGAAAGGTGGACATTCTGGAAACTATAGCAGTGAATCTAATCAGGGAAGTAAGGCTTCAAGGGCAGATCAGGAACGCCGAAAGGGGATTGCTTGGACAGAGGATGAGCACAGGCTATTTCTTCTTGGCTTGGAAAAATATGGGAAAGGTGACTGGCGAAGTATATCTCGGAACTTTGTGGTAACAAGAACTCCTACGCAAGTGGCAAGCCACGCACAAAAGTATTTTATACGCTTGAATTCAATGAACAAGGACAGGAGGCGATCAAGCATTCATGACATCACCAGTGTCAACAATGGAGAAATTTCAGCAGCTCAAGGGCCGATCACTGGTCAAGCAAATGGTGCCGCAGTAGGTTCCTCTGGCAAGTCCCCCAAACAATCTCCTGCTGGGCCCCCAGGGGTTGGCATGTACGGTGCACCGAGTATAGGGCAGCCAATTGGAGGACCCCTTGTCTCAGCTGTTGGCACACCTGTGAATCTCCCTGCTCCCCCGCACATGGCATATGGCGTTAGAGCCCCGGTACCTGGAGGAGTTGTTCCTGGTGCACCAATGAGCATGGTTCCGATGACATATCCAATGCCTCATAGTTCGCATAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

291

Amino Acids

31.11

Weight (kDa)

6.84

Isoelectric Point (pI)

55.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 12 - 54 3.9e-06 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 121 - 166 7.7e-12 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013465)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08520
fragaria_vesca FvH4_4g37210 FvH4_4g37210
malus_domestica MD00G1126800.v1.1 MD13G1002700.v1.1
prunus_persica Prupe.1G349700_v2.0.a1
pyrus_communis pycom13g00230 pycom16g00150
rosa_chinensis RchiOBHm_Chr4g0446981
rosa_laevigata RLG00000005614
rosa_multiflora Rmu_sc0001753.1_g000003
rosa_roxburghii Rroxscaffold_5G00387320
rosa_rugosa Rorug04G0376800
rosa_samantha Rh4AG438400 Rh4BG447400 Rh4CG464500 Rh4DG446000
rosa_wichuraiana Rw4G037490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 793
AccB1I GGYRCC 2 cut(s) 614, 793
AccB7I CCANNNNNTGG 1 cut(s) 674
AciI CCGC 3 cut(s) 209, 618, 764
AcsI RAATTY 2 cut(s) 508, 573
AcuI CTGAAG 2 cut(s) 78, 213
AfaI GTAC 3 cut(s) 126, 683, 795
AfiI CCNNNNNNNGG 6 cut(s) 599, 674, 698, 713, 769, 797
AgsI TTSAA 4 cut(s) 240, 330, 508, 513
AhdI GACNNNNNGTC 1 cut(s) 722
AjnI CCWGG 3 cut(s) 667, 796, 811
AleI CACNNNNGTG 1 cut(s) 743
AloI GAACNNNNNNTCC 2 cut(s) 792, 824
AluBI AGCT 5 cut(s) 27, 119, 197, 584, 731
AluI AGCT 5 cut(s) 27, 119, 197, 584, 731
Alw21I GWGCWC 3 cut(s) 381, 691, 820
Alw26I GTCTC 1 cut(s) 730
Alw44I GTGCAC 2 cut(s) 687, 816
Ama87I CYCGRG 1 cut(s) 39
AoxI GGCC 2 cut(s) 590, 662
ApaI GGGCCC 1 cut(s) 666
ApaLI GTGCAC 2 cut(s) 687, 816
ApeKI GCWGC 3 cut(s) 211, 581, 703
ApoI RAATTY 2 cut(s) 508, 573
Asp718I GGTACC 1 cut(s) 793
AspS9I GGNCC 4 cut(s) 590, 662, 663, 716
AsuC2I CCSGG 1 cut(s) 791
AsuHPI GGTGA 2 cut(s) 431, 544
AvaI CYCGRG 1 cut(s) 39
AvaII GGWCC 1 cut(s) 716
AxyI CCTNAGG 1 cut(s) 84
BaeGI GKGCMC 3 cut(s) 666, 691, 820
BanI GGYRCC 2 cut(s) 614, 793
BanII GRGCYC 2 cut(s) 666, 790
Bbv12I GWGCWC 3 cut(s) 381, 691, 820
BbvI GCAGC 3 cut(s) 198, 593, 715
BciT130I CCWGG 3 cut(s) 669, 798, 813
BcnI CCSGG 1 cut(s) 791
BcoDI GTCTC 1 cut(s) 730
BfaI CTAG 2 cut(s) 140, 243
BfmI CTRYAG 1 cut(s) 295
BisI GCNGC 5 cut(s) 209, 212, 582, 618, 704
BlsI GCNGC 5 cut(s) 210, 213, 583, 619, 705
Bme1390I CCNGG 4 cut(s) 669, 791, 798, 813
Bme18I GGWCC 1 cut(s) 716
BmeRI GACNNNNNGTC 1 cut(s) 722
BmeT110I CYCGRG 1 cut(s) 39
BmgT120I GGNCC 4 cut(s) 590, 662, 663, 716
BmiI GGNNCC 8 cut(s) 265, 616, 628, 664, 665, 718, 795, 834
BmrFI CCNGG 4 cut(s) 669, 791, 798, 813
BpmI CTGGAG 1 cut(s) 819
BpuEI CTTGAG 2 cut(s) 194, 570
BpuMI CCSGG 1 cut(s) 791
BsaJI CCNNGG 3 cut(s) 667, 668, 789
BsaXI ACNNNNNCTCC 4 cut(s) 445, 475, 792, 822
Bsc4I CCNNNNNNNGG 6 cut(s) 599, 674, 698, 713, 769, 797
Bse1I ACTGG 4 cut(s) 252, 428, 555, 604
Bse21I CCTNAGG 1 cut(s) 84
BseBI CCWGG 3 cut(s) 669, 798, 813
BseDI CCNNGG 3 cut(s) 667, 668, 789
BseGI GGATG 1 cut(s) 379
BseLI CCNNNNNNNGG 6 cut(s) 599, 674, 698, 713, 769, 797
BseMII CTCAG 2 cut(s) 75, 741
BseNI ACTGG 4 cut(s) 252, 428, 555, 604
BseRI GAGGAG 2 cut(s) 158, 816
BseSI GKGCMC 3 cut(s) 666, 691, 820
BseXI GCAGC 3 cut(s) 198, 593, 715
BseYI CCCAGC 1 cut(s) 659
BshFI GGCC 2 cut(s) 592, 664
BshNI GGYRCC 2 cut(s) 614, 793
BsiHKAI GWGCWC 3 cut(s) 381, 691, 820
BsiHKCI CYCGRG 1 cut(s) 39
BsiSI CCGG 1 cut(s) 791
BslFI GGGAC 1 cut(s) 625
BslI CCNNNNNNNGG 6 cut(s) 599, 674, 698, 713, 769, 797
BsmAI GTCTC 1 cut(s) 730
BsmFI GGGAC 1 cut(s) 625
BsmI GAATGC 2 cut(s) 70, 540
BsnI GGCC 2 cut(s) 592, 664
BsoBI CYCGRG 1 cut(s) 39
Bsp120I GGGCCC 1 cut(s) 662
Bsp1286I GDGCHC 5 cut(s) 381, 666, 691, 790, 820
Bsp1407I TGTACA 1 cut(s) 124
Bsp143I GATC 5 cut(s) 97, 189, 337, 533, 594
BspACI CCGC 3 cut(s) 209, 618, 764
BspANI GGCC 2 cut(s) 592, 664
BspCNI CTCAG 2 cut(s) 76, 740
BspHI TCATGA 1 cut(s) 544
BspLI GGNNCC 8 cut(s) 265, 616, 628, 664, 665, 718, 795, 834
BspT107I GGYRCC 2 cut(s) 614, 793
BsrGI TGTACA 1 cut(s) 124
BsrI ACTGG 4 cut(s) 252, 428, 555, 604
BssECI CCNNGG 3 cut(s) 667, 668, 789
BssMI GATC 5 cut(s) 97, 189, 337, 533, 594
Bst2UI CCWGG 3 cut(s) 669, 798, 813
Bst4CI ACNGT 1 cut(s) 686
BstAPI GCANNNNNTGC 1 cut(s) 614
BstAUI TGTACA 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 478
BstDEI CTNAG 2 cut(s) 84, 727
BstF5I GGATG 1 cut(s) 379
BstKTI GATC 5 cut(s) 100, 192, 340, 536, 597
BstMAI GTCTC 1 cut(s) 730
BstMBI GATC 5 cut(s) 97, 189, 337, 533, 594
BstMWI GCNNNNNNNGC 3 cut(s) 332, 482, 614
BstNI CCWGG 3 cut(s) 669, 798, 813
BstNSI RCATGY 1 cut(s) 682
BstSCI CCNGG 4 cut(s) 667, 789, 796, 811
BstSFI CTRYAG 1 cut(s) 295
BstSLI GKGCMC 3 cut(s) 666, 691, 820
BstV1I GCAGC 3 cut(s) 198, 593, 715
Bsu36I CCTNAGG 1 cut(s) 84
BsuRI GGCC 2 cut(s) 592, 664
BtsCI GGATG 1 cut(s) 379
BtsI GCAGTG 1 cut(s) 307
BtsIMutI CAGTG 4 cut(s) 259, 307, 562, 597
Cac8I GCNNGC 1 cut(s) 478
CciI TCATGA 1 cut(s) 544
Cfr13I GGNCC 4 cut(s) 590, 662, 663, 716
Csp6I GTAC 3 cut(s) 125, 682, 794
CviAII CATG 6 cut(s) 128, 248, 545, 679, 769, 829
CviQI GTAC 3 cut(s) 125, 682, 794
DdeI CTNAG 2 cut(s) 84, 727
DpnI GATC 5 cut(s) 99, 191, 339, 535, 596
DpnII GATC 5 cut(s) 97, 189, 337, 533, 594
DriI GACNNNNNGTC 1 cut(s) 722
Eam1105I GACNNNNNGTC 1 cut(s) 722
Eco24I GRGCYC 2 cut(s) 666, 790
Eco47I GGWCC 1 cut(s) 716
Eco57I CTGAAG 2 cut(s) 78, 213
Eco81I CCTNAGG 1 cut(s) 84
Eco88I CYCGRG 1 cut(s) 39
EcoO109I RGGNCCY 2 cut(s) 663, 716
EcoRI GAATTC 1 cut(s) 508
EcoRII CCWGG 3 cut(s) 667, 796, 811
EcoT38I GRGCYC 2 cut(s) 666, 790
FaeI CATG 6 cut(s) 131, 251, 548, 682, 772, 832
FalI AAGNNNNNCTT 2 cut(s) 310, 342
FaqI GGGAC 1 cut(s) 625
FatI CATG 6 cut(s) 127, 247, 544, 678, 768, 828
FauI CCCGC 1 cut(s) 771
FauNDI CATATG 1 cut(s) 775
Fnu4HI GCNGC 5 cut(s) 209, 212, 582, 618, 704
FokI GGATG 1 cut(s) 386
FriOI GRGCYC 2 cut(s) 666, 790
Fsp4HI GCNGC 5 cut(s) 209, 212, 582, 618, 704
FspBI CTAG 2 cut(s) 140, 243
GluI GCNGC 5 cut(s) 209, 212, 582, 618, 704
GsaI CCCAGC 1 cut(s) 663
GsuI CTGGAG 1 cut(s) 819
HaeIII GGCC 2 cut(s) 592, 664
HapII CCGG 1 cut(s) 791
Hin1II CATG 6 cut(s) 131, 251, 548, 682, 772, 832
HincII GTYRAC 1 cut(s) 562
HindII GTYRAC 1 cut(s) 562
HinfI GANTC 4 cut(s) 37, 89, 305, 748
HpaII CCGG 1 cut(s) 791
HphI GGTGA 2 cut(s) 431, 544
Hpy166II GTNNAC 4 cut(s) 281, 562, 689, 818
Hpy188I TCNGA 4 cut(s) 97, 232, 441, 837
Hpy188III TCNNGA 5 cut(s) 41, 83, 288, 341, 545
Hpy8I GTNNAC 4 cut(s) 281, 562, 689, 818
HpyAV CCTTC 1 cut(s) 254
HpyCH4III ACNGT 1 cut(s) 686
HpyCH4V TGCA 3 cut(s) 74, 689, 818
HpyF10VI GCNNNNNNNGC 3 cut(s) 332, 482, 614
HpyF3I CTNAG 2 cut(s) 84, 727
Hsp92II CATG 6 cut(s) 131, 251, 548, 682, 772, 832
KpnI GGTACC 1 cut(s) 797
Kzo9I GATC 5 cut(s) 97, 189, 337, 533, 594
LmnI GCTCC 2 cut(s) 32, 763
Lsp1109I GCAGC 3 cut(s) 198, 593, 715
MaeI CTAG 2 cut(s) 140, 243
MaeIII GTNAC 2 cut(s) 419, 451
MalI GATC 5 cut(s) 99, 191, 339, 535, 596
MboI GATC 5 cut(s) 97, 189, 337, 533, 594
MboII GAAGA 3 cut(s) 84, 219, 383
MfeI CAATTG 1 cut(s) 708
MhlI GDGCHC 5 cut(s) 381, 666, 691, 790, 820
MluCI AATT 5 cut(s) 111, 223, 508, 573, 708
MlyI GAGTC 1 cut(s) 31
MseI TTAA 1 cut(s) 182
MslI CAYNNNNRTG 3 cut(s) 159, 252, 743
MspA1I CMGCKG 2 cut(s) 211, 731
MspI CCGG 1 cut(s) 791
MspR9I CCNGG 4 cut(s) 669, 791, 798, 813
MunI CAATTG 1 cut(s) 708
Mva1269I GAATGC 2 cut(s) 70, 540
MvaI CCWGG 3 cut(s) 669, 798, 813
MwoI GCNNNNNNNGC 3 cut(s) 332, 482, 614
NciI CCSGG 1 cut(s) 791
NdeI CATATG 1 cut(s) 775
NdeII GATC 5 cut(s) 97, 189, 337, 533, 594
NlaIII CATG 6 cut(s) 131, 251, 548, 682, 772, 832
NlaIV GGNNCC 8 cut(s) 265, 616, 628, 664, 665, 718, 795, 834
NmuCI GTSAC 1 cut(s) 419
NspI RCATGY 1 cut(s) 682
OliI CACNNNNGTG 1 cut(s) 743
PaeR7I CTCGAG 1 cut(s) 39
PagI TCATGA 1 cut(s) 544
PasI CCCWGGG 1 cut(s) 668
PctI GAATGC 2 cut(s) 70, 540
PfeI GAWTC 3 cut(s) 89, 305, 748
PflMI CCANNNNNTGG 1 cut(s) 674
PkrI GCNGC 5 cut(s) 210, 213, 583, 619, 705
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
PpuMI RGGWCCY 1 cut(s) 716
Psp5II RGGWCCY 1 cut(s) 716
Psp6I CCWGG 3 cut(s) 667, 796, 811
PspFI CCCAGC 1 cut(s) 659
PspGI CCWGG 3 cut(s) 667, 796, 811
PspN4I GGNNCC 8 cut(s) 265, 616, 628, 664, 665, 718, 795, 834
PspOMI GGGCCC 1 cut(s) 662
PspPI GGNCC 4 cut(s) 590, 662, 663, 716
PspPPI RGGWCCY 1 cut(s) 716
PvuII CAGCTG 1 cut(s) 731
RsaI GTAC 3 cut(s) 126, 683, 795
RsaNI GTAC 3 cut(s) 125, 682, 794
RseI CAYNNNNRTG 3 cut(s) 159, 252, 743
SaqAI TTAA 1 cut(s) 182
SatI GCNGC 5 cut(s) 209, 212, 582, 618, 704
Sau3AI GATC 5 cut(s) 97, 189, 337, 533, 594
Sau96I GGNCC 4 cut(s) 590, 662, 663, 716
SchI GAGTC 1 cut(s) 31
ScrFI CCNGG 4 cut(s) 669, 791, 798, 813
SduI GDGCHC 5 cut(s) 381, 666, 691, 790, 820
SfcI CTRYAG 1 cut(s) 295
Sfr274I CTCGAG 1 cut(s) 39
SinI GGWCC 1 cut(s) 716
SlaI CTCGAG 1 cut(s) 39
SmiMI CAYNNNNRTG 3 cut(s) 159, 252, 743
SmlI CTYRAG 3 cut(s) 39, 173, 585
SmoI CTYRAG 3 cut(s) 39, 173, 585
Sse9I AATT 5 cut(s) 111, 223, 508, 573, 708
SsiI CCGC 3 cut(s) 209, 618, 764
SspMI CTAG 2 cut(s) 140, 243
StyD4I CCNGG 4 cut(s) 667, 789, 796, 811
TaaI ACNGT 1 cut(s) 686
TaqI TCGA 2 cut(s) 40, 192
TasI AATT 5 cut(s) 111, 223, 508, 573, 708
TatI WGTACW 1 cut(s) 124
TauI GCSGC 2 cut(s) 211, 620
TfiI GAWTC 3 cut(s) 89, 305, 748
Tru1I TTAA 1 cut(s) 182
Tru9I TTAA 1 cut(s) 182
TscAI CASTG 4 cut(s) 259, 307, 562, 604
TseFI GTSAC 1 cut(s) 419
TseI GCWGC 3 cut(s) 211, 581, 703
Tsp45I GTSAC 1 cut(s) 419
TspDTI ATGAA 3 cut(s) 273, 530, 533
TspRI CASTG 4 cut(s) 259, 307, 562, 604
Van91I CCANNNNNTGG 1 cut(s) 674
VneI GTGCAC 2 cut(s) 687, 816
VpaK11BI GGWCC 1 cut(s) 716
XapI RAATTY 2 cut(s) 508, 573
XceI RCATGY 1 cut(s) 682
XcmI CCANNNNNNNNNTGG 1 cut(s) 194
XhoI CTCGAG 1 cut(s) 39
XspI CTAG 2 cut(s) 140, 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.