Rh4CG464500
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0013465
Physical Location & Seq
Reverse (-)
69463730 .. 69466881
3152 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG464500.1

Sequence Viewer

Length: 876 bp
ATGAGTGTGGACGAAGCGGTTGCTAGCTCCTTGTGGACTTGGGAGCAGGATAAGGCATTTGAGAATGCCCTGGCAACTTATCCCGAGGATGCTCCAGATCGTTGGGACAAAATTGCAGCTGATGTAGAAGGGAAAAACCTAGAGGAGATAAAGCATCATTATGAACTCTTACTTGATGATATAAGCCAGATCGAAGCTGGTTGTATTCCACTGCCTTGCTACAATTCTTCTTCCGAGGGTTCAACATGCCATGCCAGTGATGAAGGAACCAGTAAGAAGGGACACTACAGCAGCGAATCTAATCATGGAAGTAAGGCTTCAAGGGCAGATCAGGAACGCCGTAAGGGGATTGCTTGGACAGAGGATGAACACAGGCAATTTCTTTTAGGATTGGAAAAATATGGGAAAGGTGATTGGCGAAGTATATCACGGAACTTTGTGGTAACAAGAACACCCACCCAAGTGGCAAGCCATGCACAAAAGTATTTCATACGTTTGAATTCAATGAACAAGGACAGAAGGCGATCAAGCATCCATGACATCACCAGTGTCAACAATGGAGAAATTGCGGCAATCCAAGGGCCGATCACTGGTCAAGGAAATGGTTCTGCAGTAGGCCCATCTGGCTCTGCGAAATCAACCAAACAATCTGCTGCTGGACCCCCGGGGGTTGGCATGTATGGTGCACCAAGTATCGGGCAACCAATTGGAGGACCTCTTGTCTCAGCTGTTGGCACACCAGTGAATCTTGCTGGCCCTTCCCCACACATGGCATATGGTGTGAGAGCCCCTATGCCTCCTGGAGCACTTGTTCCTGGGGCACCAATGAACATGCCCCCCATGACATATCCTATGCCTCACACGGCTCATAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

291

Amino Acids

31.19

Weight (kDa)

6.41

Isoelectric Point (pI)

49.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 12 - 55 1.3e-06 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 118 - 163 9.3e-12 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013465)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08520
fragaria_vesca FvH4_4g37210 FvH4_4g37210
malus_domestica MD00G1126800.v1.1 MD13G1002700.v1.1
prunus_persica Prupe.1G349700_v2.0.a1
pyrus_communis pycom13g00230 pycom16g00150
rosa_chinensis RchiOBHm_Chr4g0446981
rosa_laevigata RLG00000005614
rosa_multiflora Rmu_sc0001753.1_g000003
rosa_roxburghii Rroxscaffold_5G00387320
rosa_rugosa Rorug04G0376800
rosa_samantha Rh4AG438400 Rh4BG447400 Rh4CG464500 Rh4DG446000
rosa_wichuraiana Rw4G037490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 820
AciI CCGC 2 cut(s) 17, 569
AcsI RAATTY 1 cut(s) 499
AfiI CCNNNNNNNGG 5 cut(s) 590, 671, 695, 710, 769
AgsI TTSAA 4 cut(s) 243, 321, 499, 504
AhdI GACNNNNNGTC 1 cut(s) 719
AjnI CCWGG 3 cut(s) 69, 799, 814
AleI CACNNNNGTG 2 cut(s) 461, 740
AloI GAACNNNNNNTCC 2 cut(s) 795, 827
AluBI AGCT 4 cut(s) 27, 119, 197, 728
AluI AGCT 4 cut(s) 27, 119, 197, 728
Alw21I GWGCWC 2 cut(s) 688, 808
Alw26I GTCTC 1 cut(s) 727
Alw44I GTGCAC 1 cut(s) 684
Ama87I CYCGRG 2 cut(s) 83, 664
AoxI GGCC 3 cut(s) 581, 616, 754
ApaLI GTGCAC 1 cut(s) 684
ApeKI GCWGC 3 cut(s) 116, 291, 653
ApoI RAATTY 1 cut(s) 499
Asp700I GAANNNNTTC 1 cut(s) 604
AspS9I GGNCC 5 cut(s) 581, 617, 659, 713, 755
AsuC2I CCSGG 2 cut(s) 665, 666
AsuHPI GGTGA 2 cut(s) 422, 535
AsuNHI GCTAGC 1 cut(s) 23
AvaI CYCGRG 2 cut(s) 83, 664
AvaII GGWCC 2 cut(s) 659, 713
BaeGI GKGCMC 2 cut(s) 688, 823
BanI GGYRCC 1 cut(s) 820
BanII GRGCYC 1 cut(s) 790
BarI GAAGNNNNNNTAC 2 cut(s) 269, 301
Bbv12I GWGCWC 2 cut(s) 688, 808
BbvI GCAGC 3 cut(s) 128, 303, 640
BccI CCATC 1 cut(s) 628
BceAI ACGGC 1 cut(s) 324
BcgI CGANNNNNNTGC 1 cut(s) 36
BciT130I CCWGG 3 cut(s) 71, 801, 816
BcnI CCSGG 2 cut(s) 665, 666
BcoDI GTCTC 1 cut(s) 727
BfaI CTAG 2 cut(s) 24, 140
BfmI CTRYAG 2 cut(s) 286, 609
BglI GCCNNNNNGGC 1 cut(s) 624
BisI GCNGC 4 cut(s) 117, 292, 570, 654
BlsI GCNGC 4 cut(s) 118, 293, 571, 655
Bme1390I CCNGG 5 cut(s) 71, 665, 666, 801, 816
Bme18I GGWCC 2 cut(s) 659, 713
BmeRI GACNNNNNGTC 1 cut(s) 719
BmeT110I CYCGRG 2 cut(s) 83, 664
BmgT120I GGNCC 5 cut(s) 581, 617, 659, 713, 755
BmiI GGNNCC 3 cut(s) 268, 661, 822
BmrFI CCNGG 5 cut(s) 71, 665, 666, 801, 816
BmsI GCATC 3 cut(s) 79, 163, 540
BmtI GCTAGC 1 cut(s) 27
BpmI CTGGAG 2 cut(s) 78, 822
BpuMI CCSGG 2 cut(s) 665, 666
BsaJI CCNNGG 8 cut(s) 69, 84, 234, 577, 663, 664, 665, 815
BsaXI ACNNNNNCTCC 2 cut(s) 795, 825
Bsc4I CCNNNNNNNGG 5 cut(s) 590, 671, 695, 710, 769
Bse1I ACTGG 5 cut(s) 255, 270, 546, 595, 740
BseBI CCWGG 3 cut(s) 71, 801, 816
BseDI CCNNGG 8 cut(s) 69, 84, 234, 577, 663, 664, 665, 815
BseGI GGATG 3 cut(s) 94, 370, 531
BseLI CCNNNNNNNGG 5 cut(s) 590, 671, 695, 710, 769
BseMII CTCAG 1 cut(s) 738
BseNI ACTGG 5 cut(s) 255, 270, 546, 595, 740
BseRI GAGGAG 1 cut(s) 158
BseSI GKGCMC 2 cut(s) 688, 823
BseXI GCAGC 3 cut(s) 128, 303, 640
BshFI GGCC 3 cut(s) 583, 618, 756
BshNI GGYRCC 1 cut(s) 820
BsiHKAI GWGCWC 2 cut(s) 688, 808
BsiHKCI CYCGRG 2 cut(s) 83, 664
BsiSI CCGG 1 cut(s) 665
BslFI GGGAC 2 cut(s) 119, 294
BslI CCNNNNNNNGG 5 cut(s) 590, 671, 695, 710, 769
BsmAI GTCTC 1 cut(s) 727
BsmFI GGGAC 2 cut(s) 119, 294
BsmI GAATGC 1 cut(s) 70
BsnI GGCC 3 cut(s) 583, 618, 756
BsoBI CYCGRG 2 cut(s) 83, 664
Bsp1286I GDGCHC 4 cut(s) 688, 790, 808, 823
Bsp143I GATC 5 cut(s) 97, 189, 328, 524, 585
BspACI CCGC 2 cut(s) 17, 569
BspANI GGCC 3 cut(s) 583, 618, 756
BspCNI CTCAG 1 cut(s) 737
BspLI GGNNCC 3 cut(s) 268, 661, 822
BspMAI CTGCAG 1 cut(s) 613
BspOI GCTAGC 1 cut(s) 27
BspT107I GGYRCC 1 cut(s) 820
BsrI ACTGG 5 cut(s) 255, 270, 546, 595, 740
BssECI CCNNGG 8 cut(s) 69, 84, 234, 577, 663, 664, 665, 815
BssMI GATC 5 cut(s) 97, 189, 328, 524, 585
BssT1I CCWWGG 1 cut(s) 577
Bst2UI CCWGG 3 cut(s) 71, 801, 816
BstAPI GCANNNNNTGC 1 cut(s) 473
BstC8I GCNNGC 3 cut(s) 25, 469, 754
BstDEI CTNAG 1 cut(s) 724
BstF5I GGATG 3 cut(s) 94, 370, 531
BstKTI GATC 5 cut(s) 100, 192, 331, 527, 588
BstMAI GTCTC 1 cut(s) 727
BstMBI GATC 5 cut(s) 97, 189, 328, 524, 585
BstMWI GCNNNNNNNGC 3 cut(s) 323, 473, 624
BstNI CCWGG 3 cut(s) 71, 801, 816
BstNSI RCATGY 3 cut(s) 249, 679, 835
BstSCI CCNGG 5 cut(s) 69, 663, 664, 799, 814
BstSFI CTRYAG 2 cut(s) 286, 609
BstSLI GKGCMC 2 cut(s) 688, 823
BstV1I GCAGC 3 cut(s) 128, 303, 640
BstXI CCANNNNNNTGG 2 cut(s) 102, 463
BsuRI GGCC 3 cut(s) 583, 618, 756
BtsCI GGATG 3 cut(s) 94, 370, 531
BtsI GCAGTG 1 cut(s) 209
BtsIMutI CAGTG 5 cut(s) 209, 262, 553, 588, 747
Cac8I GCNNGC 3 cut(s) 25, 469, 754
Cfr13I GGNCC 5 cut(s) 581, 617, 659, 713, 755
Cfr9I CCCGGG 1 cut(s) 664
CviAII CATG 9 cut(s) 246, 251, 305, 473, 536, 676, 769, 832, 841
DdeI CTNAG 1 cut(s) 724
DpnI GATC 5 cut(s) 99, 191, 330, 526, 587
DpnII GATC 5 cut(s) 97, 189, 328, 524, 585
DriI GACNNNNNGTC 1 cut(s) 719
Eam1105I GACNNNNNGTC 1 cut(s) 719
Eco130I CCWWGG 1 cut(s) 577
Eco24I GRGCYC 1 cut(s) 790
Eco47I GGWCC 2 cut(s) 659, 713
Eco88I CYCGRG 2 cut(s) 83, 664
EcoO109I RGGNCCY 1 cut(s) 713
EcoRI GAATTC 1 cut(s) 499
EcoRII CCWGG 3 cut(s) 69, 799, 814
EcoT14I CCWWGG 1 cut(s) 577
EcoT38I GRGCYC 1 cut(s) 790
ErhI CCWWGG 1 cut(s) 577
FaeI CATG 9 cut(s) 249, 254, 308, 476, 539, 679, 772, 835, 844
FalI AAGNNNNNCTT 2 cut(s) 301, 333
FaqI GGGAC 2 cut(s) 119, 294
FatI CATG 9 cut(s) 245, 250, 304, 472, 535, 675, 768, 831, 840
FauNDI CATATG 1 cut(s) 775
Fnu4HI GCNGC 4 cut(s) 117, 292, 570, 654
FokI GGATG 3 cut(s) 101, 377, 518
FriOI GRGCYC 1 cut(s) 790
Fsp4HI GCNGC 4 cut(s) 117, 292, 570, 654
FspBI CTAG 2 cut(s) 24, 140
GluI GCNGC 4 cut(s) 117, 292, 570, 654
GsuI CTGGAG 2 cut(s) 78, 822
HaeIII GGCC 3 cut(s) 583, 618, 756
HapII CCGG 1 cut(s) 665
Hin1II CATG 9 cut(s) 249, 254, 308, 476, 539, 679, 772, 835, 844
HincII GTYRAC 1 cut(s) 553
HindII GTYRAC 1 cut(s) 553
HinfI GANTC 2 cut(s) 296, 745
HpaII CCGG 1 cut(s) 665
HphI GGTGA 2 cut(s) 422, 535
Hpy166II GTNNAC 4 cut(s) 10, 36, 553, 686
Hpy188I TCNGA 1 cut(s) 235
Hpy188III TCNNGA 3 cut(s) 83, 95, 332
Hpy8I GTNNAC 4 cut(s) 10, 36, 553, 686
HpyAV CCTTC 5 cut(s) 122, 257, 271, 513, 768
HpyCH4IV ACGT 1 cut(s) 493
HpyCH4V TGCA 4 cut(s) 116, 476, 611, 686
HpyF10VI GCNNNNNNNGC 3 cut(s) 323, 473, 624
HpyF3I CTNAG 1 cut(s) 724
HpySE526I ACGT 1 cut(s) 493
Hsp92II CATG 9 cut(s) 249, 254, 308, 476, 539, 679, 772, 835, 844
Kzo9I GATC 5 cut(s) 97, 189, 328, 524, 585
LmnI GCTCC 4 cut(s) 32, 43, 97, 803
Lsp1109I GCAGC 3 cut(s) 128, 303, 640
LweI GCATC 3 cut(s) 79, 163, 540
MaeI CTAG 2 cut(s) 24, 140
MaeII ACGT 1 cut(s) 493
MaeIII GTNAC 1 cut(s) 442
MalI GATC 5 cut(s) 99, 191, 330, 526, 587
MboI GATC 5 cut(s) 97, 189, 328, 524, 585
MboII GAAGA 2 cut(s) 219, 222
MfeI CAATTG 1 cut(s) 705
MhlI GDGCHC 4 cut(s) 688, 790, 808, 823
MluCI AATT 6 cut(s) 111, 223, 377, 499, 564, 705
MnlI CCTC 8 cut(s) 79, 136, 229, 355, 704, 726, 807, 867
MroXI GAANNNNTTC 1 cut(s) 604
MslI CAYNNNNRTG 4 cut(s) 159, 255, 461, 740
MspA1I CMGCKG 2 cut(s) 119, 728
MspI CCGG 1 cut(s) 665
MspR9I CCNGG 5 cut(s) 71, 665, 666, 801, 816
MunI CAATTG 1 cut(s) 705
Mva1269I GAATGC 1 cut(s) 70
MvaI CCWGG 3 cut(s) 71, 801, 816
MwoI GCNNNNNNNGC 3 cut(s) 323, 473, 624
NciI CCSGG 2 cut(s) 665, 666
NdeI CATATG 1 cut(s) 775
NdeII GATC 5 cut(s) 97, 189, 328, 524, 585
NheI GCTAGC 1 cut(s) 23
NlaIII CATG 9 cut(s) 249, 254, 308, 476, 539, 679, 772, 835, 844
NlaIV GGNNCC 3 cut(s) 268, 661, 822
NspI RCATGY 3 cut(s) 249, 679, 835
OliI CACNNNNGTG 2 cut(s) 461, 740
PctI GAATGC 1 cut(s) 70
PdmI GAANNNNTTC 1 cut(s) 604
PfeI GAWTC 2 cut(s) 296, 745
PfoI TCCNGGA 1 cut(s) 799
PkrI GCNGC 4 cut(s) 118, 293, 571, 655
PpuMI RGGWCCY 1 cut(s) 713
Psp5II RGGWCCY 1 cut(s) 713
Psp6I CCWGG 3 cut(s) 69, 799, 814
PspGI CCWGG 3 cut(s) 69, 799, 814
PspN4I GGNNCC 3 cut(s) 268, 661, 822
PspPI GGNCC 5 cut(s) 581, 617, 659, 713, 755
PspPPI RGGWCCY 1 cut(s) 713
PstI CTGCAG 1 cut(s) 613
PvuII CAGCTG 2 cut(s) 119, 728
RseI CAYNNNNRTG 4 cut(s) 159, 255, 461, 740
SatI GCNGC 4 cut(s) 117, 292, 570, 654
Sau3AI GATC 5 cut(s) 97, 189, 328, 524, 585
Sau96I GGNCC 5 cut(s) 581, 617, 659, 713, 755
ScrFI CCNGG 5 cut(s) 71, 665, 666, 801, 816
SduI GDGCHC 4 cut(s) 688, 790, 808, 823
SetI ASST 9 cut(s) 29, 121, 141, 199, 412, 496, 718, 730, 875
SfaNI GCATC 3 cut(s) 79, 163, 540
SfcI CTRYAG 2 cut(s) 286, 609
SinI GGWCC 2 cut(s) 659, 713
SmaI CCCGGG 1 cut(s) 666
SmiMI CAYNNNNRTG 4 cut(s) 159, 255, 461, 740
Sse9I AATT 6 cut(s) 111, 223, 377, 499, 564, 705
SsiI CCGC 2 cut(s) 17, 569
SspMI CTAG 2 cut(s) 24, 140
StyD4I CCNGG 5 cut(s) 69, 663, 664, 799, 814
StyI CCWWGG 1 cut(s) 577
TaiI ACGT 1 cut(s) 496
TaqI TCGA 1 cut(s) 192
TasI AATT 6 cut(s) 111, 223, 377, 499, 564, 705
TauI GCSGC 1 cut(s) 572
TfiI GAWTC 2 cut(s) 296, 745
TscAI CASTG 5 cut(s) 216, 262, 553, 595, 747
TseI GCWGC 3 cut(s) 116, 291, 653
TspDTI ATGAA 6 cut(s) 177, 276, 381, 478, 521, 842
TspGWI ACGGA 1 cut(s) 445
TspMI CCCGGG 1 cut(s) 664
TspRI CASTG 5 cut(s) 216, 262, 553, 595, 747
VneI GTGCAC 1 cut(s) 684
VpaK11BI GGWCC 2 cut(s) 659, 713
XapI RAATTY 1 cut(s) 499
XceI RCATGY 3 cut(s) 249, 679, 835
XcmI CCANNNNNNNNNTGG 1 cut(s) 194
XmaI CCCGGG 1 cut(s) 664
XmnI GAANNNNTTC 1 cut(s) 604
XspI CTAG 2 cut(s) 24, 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.