Prupe.1G349700_v2.0.a1
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0013465
Physical Location & Seq
Reverse (-)
32592857 .. 32596510
3654 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G349700.1

Sequence Viewer

Length: 885 bp
ATGACCGTGGATGAAGCAGGTAGTAGCTCCTTGTGGAGTCGAGAGCAGGATAAGGCATTTGAGAATGCTCTGGCAACTTATTCTGAGGATTCTTCAGATCGGTGGGAAAAAATTGCAGCTGATGTACCAGAGAAAACCATAGAGGAAATAAAACATCATTATGAACTCTTAGTTGATGACATAAACCAGATCGAAGCTGGTTTTGTGCCACTGCCTTGCTACAATTCTTCTTCAGAGGGTTCGACAAGCCATGCCAGTGACGAAGGAACTAATAAGAAAGGTGGACATTCTGGAAACTACAGCAGTGAATCTAATCATGGAACTAAGGCTTCAAGGGCAGATCAGGAGCGCCGAAAGGGGATTGCTTGGACAGAGGATGAACACAGGCTATTTCTTCTTGGTTTGGAGAAATATGGGAAAGGTGACTGGCGAAGCATATCTCGGAATTTTGTGGTAACAAGAACTCCTACACAAGTGGCAAGCCACGCACAGAAGTACTTCATACGTTTGAATTCAATGAACAAGGACAGAAGGAGATCAAGCATTCATGATATCACCAGTGTCAACAATGGAGACATTTCGTCACCTCAAGGGCCAATAACAGGTCAAGCAAATGGATCTGCAGTAGGTTCTTCTGGCAAGTCAACCAAACAATCTCCTGCTGGGCCTCCAGGGCCAGGGGTTGGCATGTACGGTGCACCGACTATAGGACAACCGATTGGAGGACCCCTTGTATCAGCTGTTGGCACACCTGTGAATCTCCCTGCAGGGCCTCCACACATGGCGTATGGTCTGAGAGCCCCCGTACCTGGAGGAATTGTTCCGGGGGCACCAATGAACATGGTTCCCATGACATATCCAATGCCTCACACTTCTCATAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

295

Amino Acids

31.48

Weight (kDa)

6.6

Isoelectric Point (pI)

53.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013465)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08520
fragaria_vesca FvH4_4g37210 FvH4_4g37210
malus_domestica MD00G1126800.v1.1 MD13G1002700.v1.1
prunus_persica Prupe.1G349700_v2.0.a1
pyrus_communis pycom13g00230 pycom16g00150
rosa_chinensis RchiOBHm_Chr4g0446981
rosa_laevigata RLG00000005614
rosa_multiflora Rmu_sc0001753.1_g000003
rosa_roxburghii Rroxscaffold_5G00387320
rosa_rugosa Rorug04G0376800
rosa_samantha Rh4AG438400 Rh4BG447400 Rh4CG464500 Rh4DG446000
rosa_wichuraiana Rw4G037490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 8
AccB1I GGYRCC 1 cut(s) 829
AccB7I CCANNNNNTGG 1 cut(s) 683
AclWI GGATC 1 cut(s) 625
AcsI RAATTY 2 cut(s) 445, 511
AcuI CTGAAG 2 cut(s) 78, 216
AfaI GTAC 4 cut(s) 126, 497, 692, 807
AfiI CCNNNNNNNGG 6 cut(s) 602, 677, 683, 707, 722, 809
AgsI TTSAA 3 cut(s) 333, 511, 516
AhdI GACNNNNNGTC 1 cut(s) 580
AjnI CCWGG 3 cut(s) 670, 676, 808
AleI CACNNNNGTG 1 cut(s) 752
AloI GAACNNNNNNTCC 2 cut(s) 804, 836
AluBI AGCT 4 cut(s) 27, 119, 197, 740
AluI AGCT 4 cut(s) 27, 119, 197, 740
Alw21I GWGCWC 1 cut(s) 700
Alw26I GTCTC 1 cut(s) 567
Alw44I GTGCAC 1 cut(s) 696
AlwI GGATC 1 cut(s) 625
AoxI GGCC 4 cut(s) 593, 665, 674, 770
ApaLI GTGCAC 1 cut(s) 696
ApeKI GCWGC 1 cut(s) 116
ApoI RAATTY 2 cut(s) 445, 511
Asp700I GAANNNNTTC 1 cut(s) 497
AspLEI GCGC 1 cut(s) 351
AspS9I GGNCC 5 cut(s) 593, 665, 674, 725, 770
AsuC2I CCSGG 1 cut(s) 825
AsuHPI GGTGA 3 cut(s) 434, 547, 576
AvaII GGWCC 1 cut(s) 725
BaeGI GKGCMC 2 cut(s) 700, 832
BanI GGYRCC 1 cut(s) 829
BanII GRGCYC 1 cut(s) 802
Bbv12I GWGCWC 1 cut(s) 700
BbvI GCAGC 1 cut(s) 128
BciT130I CCWGG 3 cut(s) 672, 678, 810
BcnI CCSGG 1 cut(s) 825
BcoDI GTCTC 1 cut(s) 567
BfmI CTRYAG 4 cut(s) 298, 621, 705, 765
BfoI RGCGCY 1 cut(s) 352
BfuAI ACCTGC 1 cut(s) 8
BglI GCCNNNNNGGC 1 cut(s) 673
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
BmcAI AGTACT 1 cut(s) 497
Bme1390I CCNGG 4 cut(s) 672, 678, 810, 825
Bme18I GGWCC 1 cut(s) 725
BmeRI GACNNNNNGTC 1 cut(s) 580
BmgT120I GGNCC 5 cut(s) 593, 665, 674, 725, 770
BmiI GGNNCC 3 cut(s) 727, 831, 846
BmrFI CCNGG 4 cut(s) 672, 678, 810, 825
BpmI CTGGAG 2 cut(s) 654, 831
BpuEI CTTGAG 1 cut(s) 573
BpuMI CCSGG 1 cut(s) 825
BsaJI CCNNGG 4 cut(s) 6, 671, 677, 824
BsaXI ACNNNNNCTCC 4 cut(s) 448, 478, 804, 834
Bsc4I CCNNNNNNNGG 6 cut(s) 602, 677, 683, 707, 722, 809
Bse1I ACTGG 3 cut(s) 255, 431, 558
BseBI CCWGG 3 cut(s) 672, 678, 810
BseDI CCNNGG 4 cut(s) 6, 671, 677, 824
BseGI GGATG 2 cut(s) 16, 382
BseLI CCNNNNNNNGG 6 cut(s) 602, 677, 683, 707, 722, 809
BseMII CTCAG 2 cut(s) 75, 785
BseNI ACTGG 3 cut(s) 255, 431, 558
BseSI GKGCMC 2 cut(s) 700, 832
BseXI GCAGC 1 cut(s) 128
BseYI CCCAGC 1 cut(s) 662
BshFI GGCC 4 cut(s) 595, 667, 676, 772
BshNI GGYRCC 1 cut(s) 829
BsiHKAI GWGCWC 1 cut(s) 700
BsiSI CCGG 1 cut(s) 824
BslI CCNNNNNNNGG 6 cut(s) 602, 677, 683, 707, 722, 809
BsmAI GTCTC 1 cut(s) 567
BsmI GAATGC 2 cut(s) 70, 543
BsnI GGCC 4 cut(s) 595, 667, 676, 772
Bsp1286I GDGCHC 3 cut(s) 700, 802, 832
Bsp143I GATC 5 cut(s) 97, 189, 340, 536, 617
BspANI GGCC 4 cut(s) 595, 667, 676, 772
BspCNI CTCAG 2 cut(s) 76, 786
BspHI TCATGA 1 cut(s) 547
BspLI GGNNCC 3 cut(s) 727, 831, 846
BspMAI CTGCAG 2 cut(s) 625, 769
BspMI ACCTGC 1 cut(s) 8
BspPI GGATC 1 cut(s) 625
BspT107I GGYRCC 1 cut(s) 829
BsrI ACTGG 3 cut(s) 255, 431, 558
BssECI CCNNGG 4 cut(s) 6, 671, 677, 824
BssMI GATC 5 cut(s) 97, 189, 340, 536, 617
Bst2UI CCWGG 3 cut(s) 672, 678, 810
Bst4CI ACNGT 2 cut(s) 7, 695
BstC8I GCNNGC 1 cut(s) 481
BstDEI CTNAG 4 cut(s) 84, 169, 324, 794
BstDSI CCRYGG 1 cut(s) 6
BstF5I GGATG 2 cut(s) 16, 382
BstH2I RGCGCY 1 cut(s) 352
BstHHI GCGC 1 cut(s) 351
BstKTI GATC 5 cut(s) 100, 192, 343, 539, 620
BstMAI GTCTC 1 cut(s) 567
BstMBI GATC 5 cut(s) 97, 189, 340, 536, 617
BstMWI GCNNNNNNNGC 3 cut(s) 335, 485, 673
BstNI CCWGG 3 cut(s) 672, 678, 810
BstNSI RCATGY 1 cut(s) 691
BstSCI CCNGG 4 cut(s) 670, 676, 808, 823
BstSFI CTRYAG 4 cut(s) 298, 621, 705, 765
BstSLI GKGCMC 2 cut(s) 700, 832
BstV1I GCAGC 1 cut(s) 128
BstX2I RGATCY 1 cut(s) 617
BstYI RGATCY 1 cut(s) 617
BsuRI GGCC 4 cut(s) 595, 667, 676, 772
BtgI CCRYGG 1 cut(s) 6
BtsCI GGATG 2 cut(s) 16, 382
BtsI GCAGTG 2 cut(s) 209, 310
BtsIMutI CAGTG 4 cut(s) 209, 262, 310, 565
BveI ACCTGC 1 cut(s) 8
Cac8I GCNNGC 1 cut(s) 481
CciI TCATGA 1 cut(s) 547
CfoI GCGC 1 cut(s) 351
Cfr13I GGNCC 5 cut(s) 593, 665, 674, 725, 770
Csp6I GTAC 4 cut(s) 125, 496, 691, 806
CviAII CATG 7 cut(s) 251, 317, 548, 688, 781, 841, 850
CviQI GTAC 4 cut(s) 125, 496, 691, 806
DdeI CTNAG 4 cut(s) 84, 169, 324, 794
DpnI GATC 5 cut(s) 99, 191, 342, 538, 619
DpnII GATC 5 cut(s) 97, 189, 340, 536, 617
DriI GACNNNNNGTC 1 cut(s) 580
Eam1105I GACNNNNNGTC 1 cut(s) 580
Eco24I GRGCYC 1 cut(s) 802
Eco32I GATATC 1 cut(s) 553
Eco47I GGWCC 1 cut(s) 725
Eco57I CTGAAG 2 cut(s) 78, 216
EcoO109I RGGNCCY 2 cut(s) 725, 770
EcoRI GAATTC 1 cut(s) 511
EcoRII CCWGG 3 cut(s) 670, 676, 808
EcoRV GATATC 1 cut(s) 553
EcoT38I GRGCYC 1 cut(s) 802
FaeI CATG 7 cut(s) 254, 320, 551, 691, 784, 844, 853
FatI CATG 7 cut(s) 250, 316, 547, 687, 780, 840, 849
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 2 cut(s) 23, 389
FriOI GRGCYC 1 cut(s) 802
Fsp4HI GCNGC 1 cut(s) 117
GlaI GCGC 1 cut(s) 350
GluI GCNGC 1 cut(s) 117
GsaI CCCAGC 1 cut(s) 666
GsuI CTGGAG 2 cut(s) 654, 831
HaeII RGCGCY 1 cut(s) 352
HaeIII GGCC 4 cut(s) 595, 667, 676, 772
HapII CCGG 1 cut(s) 824
HhaI GCGC 1 cut(s) 351
Hin1II CATG 7 cut(s) 254, 320, 551, 691, 784, 844, 853
Hin6I GCGC 1 cut(s) 349
HinP1I GCGC 1 cut(s) 349
HincII GTYRAC 2 cut(s) 565, 645
HindII GTYRAC 2 cut(s) 565, 645
HinfI GANTC 4 cut(s) 37, 89, 308, 757
HpaII CCGG 1 cut(s) 824
HphI GGTGA 3 cut(s) 434, 547, 576
Hpy166II GTNNAC 4 cut(s) 284, 565, 645, 698
Hpy188I TCNGA 5 cut(s) 85, 97, 235, 444, 795
Hpy188III TCNNGA 4 cut(s) 41, 291, 344, 548
Hpy8I GTNNAC 4 cut(s) 284, 565, 645, 698
HpyAV CCTTC 2 cut(s) 257, 525
HpyCH4III ACNGT 2 cut(s) 7, 695
HpyCH4IV ACGT 1 cut(s) 505
HpyCH4V TGCA 4 cut(s) 116, 623, 698, 767
HpyF10VI GCNNNNNNNGC 3 cut(s) 335, 485, 673
HpyF3I CTNAG 4 cut(s) 84, 169, 324, 794
HpySE526I ACGT 1 cut(s) 505
Hsp92II CATG 7 cut(s) 254, 320, 551, 691, 784, 844, 853
HspAI GCGC 1 cut(s) 349
Kzo9I GATC 5 cut(s) 97, 189, 340, 536, 617
LmnI GCTCC 2 cut(s) 32, 346
Lsp1109I GCAGC 1 cut(s) 128
MaeII ACGT 1 cut(s) 505
MaeIII GTNAC 4 cut(s) 257, 422, 454, 582
MalI GATC 5 cut(s) 99, 191, 342, 538, 619
MboI GATC 5 cut(s) 97, 189, 340, 536, 617
MboII GAAGA 5 cut(s) 84, 219, 222, 386, 624
MflI RGATCY 1 cut(s) 617
MhlI GDGCHC 3 cut(s) 700, 802, 832
MluCI AATT 5 cut(s) 111, 223, 445, 511, 816
MlyI GAGTC 1 cut(s) 46
MroXI GAANNNNTTC 1 cut(s) 497
MslI CAYNNNNRTG 3 cut(s) 159, 255, 752
MspA1I CMGCKG 2 cut(s) 119, 740
MspI CCGG 1 cut(s) 824
MspR9I CCNGG 4 cut(s) 672, 678, 810, 825
Mva1269I GAATGC 2 cut(s) 70, 543
MvaI CCWGG 3 cut(s) 672, 678, 810
MwoI GCNNNNNNNGC 3 cut(s) 335, 485, 673
NciI CCSGG 1 cut(s) 825
NdeII GATC 5 cut(s) 97, 189, 340, 536, 617
NlaIII CATG 7 cut(s) 254, 320, 551, 691, 784, 844, 853
NlaIV GGNNCC 3 cut(s) 727, 831, 846
NmuCI GTSAC 3 cut(s) 257, 422, 582
NspI RCATGY 1 cut(s) 691
OliI CACNNNNGTG 1 cut(s) 752
PagI TCATGA 1 cut(s) 547
PctI GAATGC 2 cut(s) 70, 543
PdmI GAANNNNTTC 1 cut(s) 497
PfeI GAWTC 3 cut(s) 89, 308, 757
PflMI CCANNNNNTGG 1 cut(s) 683
PkrI GCNGC 1 cut(s) 118
PleI GAGTC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 45
PpuMI RGGWCCY 1 cut(s) 725
Psp5II RGGWCCY 1 cut(s) 725
Psp6I CCWGG 3 cut(s) 670, 676, 808
PspFI CCCAGC 1 cut(s) 662
PspGI CCWGG 3 cut(s) 670, 676, 808
PspN4I GGNNCC 3 cut(s) 727, 831, 846
PspPI GGNCC 5 cut(s) 593, 665, 674, 725, 770
PspPPI RGGWCCY 1 cut(s) 725
PstI CTGCAG 2 cut(s) 625, 769
PsuI RGATCY 1 cut(s) 617
PvuII CAGCTG 2 cut(s) 119, 740
RsaI GTAC 4 cut(s) 126, 497, 692, 807
RsaNI GTAC 4 cut(s) 125, 496, 691, 806
RseI CAYNNNNRTG 3 cut(s) 159, 255, 752
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 5 cut(s) 97, 189, 340, 536, 617
Sau96I GGNCC 5 cut(s) 593, 665, 674, 725, 770
SbfI CCTGCAGG 1 cut(s) 769
ScaI AGTACT 1 cut(s) 497
SchI GAGTC 1 cut(s) 46
ScrFI CCNGG 4 cut(s) 672, 678, 810, 825
SdaI CCTGCAGG 1 cut(s) 769
SduI GDGCHC 3 cut(s) 700, 802, 832
SfcI CTRYAG 4 cut(s) 298, 621, 705, 765
SfiI GGCCNNNNNGGCC 1 cut(s) 673
SinI GGWCC 1 cut(s) 725
SmiMI CAYNNNNRTG 3 cut(s) 159, 255, 752
SmlI CTYRAG 1 cut(s) 588
SmoI CTYRAG 1 cut(s) 588
Sse8387I CCTGCAGG 1 cut(s) 769
Sse9I AATT 5 cut(s) 111, 223, 445, 511, 816
StyD4I CCNGG 4 cut(s) 670, 676, 808, 823
TaaI ACNGT 2 cut(s) 7, 695
TaiI ACGT 1 cut(s) 508
TaqI TCGA 3 cut(s) 40, 192, 242
TasI AATT 5 cut(s) 111, 223, 445, 511, 816
TatI WGTACW 1 cut(s) 495
TfiI GAWTC 3 cut(s) 89, 308, 757
TscAI CASTG 4 cut(s) 216, 262, 310, 565
TseFI GTSAC 3 cut(s) 257, 422, 582
TseI GCWGC 1 cut(s) 116
Tsp45I GTSAC 3 cut(s) 257, 422, 582
TspDTI ATGAA 7 cut(s) 27, 177, 393, 490, 533, 536, 851
TspRI CASTG 4 cut(s) 216, 262, 310, 565
Van91I CCANNNNNTGG 1 cut(s) 683
VneI GTGCAC 1 cut(s) 696
VpaK11BI GGWCC 1 cut(s) 725
XapI RAATTY 2 cut(s) 445, 511
XceI RCATGY 1 cut(s) 691
XcmI CCANNNNNNNNNTGG 1 cut(s) 194
XmnI GAANNNNTTC 1 cut(s) 497
ZrmI AGTACT 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.