MD13G1002700.v1.1
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0013465
Physical Location & Seq
Forward (+)
164691 .. 171545
6855 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1002700.v1.1.491

Sequence Viewer

Length: 876 bp
ATGACTGTGGAGGAAGTGGTCAGTAGCTCCTTATGGACTCGAGAGCAGGATAAGTCATTTGAGAATGCCCTTGCAACTTATCCTGAGGATTCTTCAGATCGGTGGGAGAAAATTGCAGCTGATGTACAAGGGAAAACCCTAGAGGAGATAAAACATCATTATGACCTCTTACTTGAGGATTTAACCCAGATCGAAGCTGGTGTTGTGCCGCTGCCTTGCTACAATTCTTCTTCAGAGGGTTCAACTAGCCATGCCAGTGATGAAGGAACCAATAAGAAAGGTGGACATTCTGGAAACTATAGCAGTGAATCTAATCATGGAAGTAAGGCTTCAAGGGCAGATCAGGAACGCCGAAAGGGGATTGCTTGGACAGAGGATGAGCACAGGCTGTTTCTTCTTGGCTTGGAAAAATATGGGAAAGGTGACTGGCGAAGTATATCTCGGAACTTTGTGGTAACAAGAACTCCTACGCAAGTGGCAAGCCACGCACAAAAGTACTTTATACGCTTGAATTCAATGAACAAGGACCGGAGGCGATCAAGCATTCATGACATCACCAGTGTCAACAATGGAGAAATTTCGGCAGCTCAAGGGCCGATCACTGGTCAAGCAAATGGTGCTGCAGTAGGTTCCTCTGGCAAGTCTCCCAAACAATCTCCTGCTGGGCCCCCAGGGGTCGGCATGTATGGTGCACCGAGTATAGGGCAGCCAATTGGAGGACCCCTTGTCTCAGCTGTTGGCACACCTGTGAATCTCCCTGCTCCCCCGCACATGGCATATGGCGTTAGAGCCCCGGTACCTGGAGGAGTTGTTCCTGGTGCACCAATGAACATGGTTCCGATGACATATCCAATGCCTCATAGTTCGCATAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

292

Amino Acids

31.18

Weight (kDa)

6.84

Isoelectric Point (pI)

54.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 12 - 54 1.2e-07 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 122 - 167 7.7e-12 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013465)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08520
fragaria_vesca FvH4_4g37210 FvH4_4g37210
malus_domestica MD00G1126800.v1.1 MD13G1002700.v1.1
prunus_persica Prupe.1G349700_v2.0.a1
pyrus_communis pycom13g00230 pycom16g00150
rosa_chinensis RchiOBHm_Chr4g0446981
rosa_laevigata RLG00000005614
rosa_multiflora Rmu_sc0001753.1_g000003
rosa_roxburghii Rroxscaffold_5G00387320
rosa_rugosa Rorug04G0376800
rosa_samantha Rh4AG438400 Rh4BG447400 Rh4CG464500 Rh4DG446000
rosa_wichuraiana Rw4G037490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 796
AccB1I GGYRCC 1 cut(s) 796
AciI CCGC 2 cut(s) 209, 767
AcsI RAATTY 2 cut(s) 511, 576
AcuI CTGAAG 2 cut(s) 78, 216
AfaI GTAC 3 cut(s) 126, 497, 798
AfiI CCNNNNNNNGG 6 cut(s) 602, 677, 701, 716, 772, 800
AgsI TTSAA 4 cut(s) 243, 333, 511, 516
AhdI GACNNNNNGTC 1 cut(s) 725
AjnI CCWGG 3 cut(s) 670, 799, 814
AleI CACNNNNGTG 1 cut(s) 746
AloI GAACNNNNNNTCC 2 cut(s) 795, 827
AluBI AGCT 5 cut(s) 27, 119, 197, 587, 734
AluI AGCT 5 cut(s) 27, 119, 197, 587, 734
Alw21I GWGCWC 3 cut(s) 384, 694, 823
Alw26I GTCTC 2 cut(s) 648, 733
Alw44I GTGCAC 2 cut(s) 690, 819
Ama87I CYCGRG 1 cut(s) 39
AoxI GGCC 2 cut(s) 593, 665
ApaI GGGCCC 1 cut(s) 669
ApaLI GTGCAC 2 cut(s) 690, 819
ApeKI GCWGC 5 cut(s) 116, 211, 584, 620, 706
ApoI RAATTY 2 cut(s) 511, 576
Asp718I GGTACC 1 cut(s) 796
AspS9I GGNCC 5 cut(s) 526, 593, 665, 666, 719
AsuC2I CCSGG 1 cut(s) 794
AsuHPI GGTGA 2 cut(s) 434, 547
AvaI CYCGRG 1 cut(s) 39
AvaII GGWCC 2 cut(s) 526, 719
AxyI CCTNAGG 1 cut(s) 84
BaeGI GKGCMC 3 cut(s) 669, 694, 823
BanI GGYRCC 1 cut(s) 796
BanII GRGCYC 2 cut(s) 669, 793
Bbv12I GWGCWC 3 cut(s) 384, 694, 823
BbvI GCAGC 5 cut(s) 128, 198, 596, 607, 718
BciT130I CCWGG 3 cut(s) 672, 801, 816
BcnI CCSGG 1 cut(s) 794
BcoDI GTCTC 2 cut(s) 648, 733
BfaI CTAG 2 cut(s) 140, 246
BfmI CTRYAG 2 cut(s) 298, 621
BisI GCNGC 6 cut(s) 117, 209, 212, 585, 621, 707
BlsI GCNGC 6 cut(s) 118, 210, 213, 586, 622, 708
BmcAI AGTACT 1 cut(s) 497
Bme1390I CCNGG 4 cut(s) 672, 794, 801, 816
Bme18I GGWCC 2 cut(s) 526, 719
BmeRI GACNNNNNGTC 1 cut(s) 725
BmeT110I CYCGRG 1 cut(s) 39
BmgT120I GGNCC 5 cut(s) 526, 593, 665, 666, 719
BmiI GGNNCC 7 cut(s) 268, 631, 667, 668, 721, 798, 837
BmrFI CCNGG 4 cut(s) 672, 794, 801, 816
BpmI CTGGAG 1 cut(s) 822
BpuEI CTTGAG 2 cut(s) 194, 573
BpuMI CCSGG 1 cut(s) 794
BsaJI CCNNGG 3 cut(s) 670, 671, 792
BsaWI WCCGGW 1 cut(s) 528
BsaXI ACNNNNNCTCC 4 cut(s) 448, 478, 795, 825
Bsc4I CCNNNNNNNGG 6 cut(s) 602, 677, 701, 716, 772, 800
Bse1I ACTGG 4 cut(s) 255, 431, 558, 607
Bse21I CCTNAGG 1 cut(s) 84
BseBI CCWGG 3 cut(s) 672, 801, 816
BseDI CCNNGG 3 cut(s) 670, 671, 792
BseGI GGATG 1 cut(s) 382
BseLI CCNNNNNNNGG 6 cut(s) 602, 677, 701, 716, 772, 800
BseMII CTCAG 2 cut(s) 75, 744
BseNI ACTGG 4 cut(s) 255, 431, 558, 607
BseRI GAGGAG 2 cut(s) 158, 819
BseSI GKGCMC 3 cut(s) 669, 694, 823
BseXI GCAGC 5 cut(s) 128, 198, 596, 607, 718
BseYI CCCAGC 1 cut(s) 662
BshFI GGCC 2 cut(s) 595, 667
BshNI GGYRCC 1 cut(s) 796
BsiHKAI GWGCWC 3 cut(s) 384, 694, 823
BsiHKCI CYCGRG 1 cut(s) 39
BsiSI CCGG 2 cut(s) 529, 794
BslI CCNNNNNNNGG 6 cut(s) 602, 677, 701, 716, 772, 800
BsmAI GTCTC 2 cut(s) 648, 733
BsmI GAATGC 2 cut(s) 70, 543
BsnI GGCC 2 cut(s) 595, 667
BsoBI CYCGRG 1 cut(s) 39
Bsp120I GGGCCC 1 cut(s) 665
Bsp1286I GDGCHC 5 cut(s) 384, 669, 694, 793, 823
Bsp1407I TGTACA 1 cut(s) 124
Bsp143I GATC 5 cut(s) 97, 189, 340, 536, 597
BspACI CCGC 2 cut(s) 209, 767
BspANI GGCC 2 cut(s) 595, 667
BspCNI CTCAG 2 cut(s) 76, 743
BspHI TCATGA 1 cut(s) 547
BspLI GGNNCC 7 cut(s) 268, 631, 667, 668, 721, 798, 837
BspMAI CTGCAG 1 cut(s) 625
BspT107I GGYRCC 1 cut(s) 796
BsrGI TGTACA 1 cut(s) 124
BsrI ACTGG 4 cut(s) 255, 431, 558, 607
BssECI CCNNGG 3 cut(s) 670, 671, 792
BssMI GATC 5 cut(s) 97, 189, 340, 536, 597
Bst2UI CCWGG 3 cut(s) 672, 801, 816
Bst4CI ACNGT 1 cut(s) 7
BstAPI GCANNNNNTGC 1 cut(s) 617
BstAUI TGTACA 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 481
BstDEI CTNAG 2 cut(s) 84, 730
BstF5I GGATG 1 cut(s) 382
BstKTI GATC 5 cut(s) 100, 192, 343, 539, 600
BstMAI GTCTC 2 cut(s) 648, 733
BstMBI GATC 5 cut(s) 97, 189, 340, 536, 597
BstMWI GCNNNNNNNGC 3 cut(s) 335, 485, 617
BstNI CCWGG 3 cut(s) 672, 801, 816
BstNSI RCATGY 1 cut(s) 685
BstSCI CCNGG 4 cut(s) 670, 792, 799, 814
BstSFI CTRYAG 2 cut(s) 298, 621
BstSLI GKGCMC 3 cut(s) 669, 694, 823
BstV1I GCAGC 5 cut(s) 128, 198, 596, 607, 718
Bsu36I CCTNAGG 1 cut(s) 84
BsuRI GGCC 2 cut(s) 595, 667
BtsCI GGATG 1 cut(s) 382
BtsI GCAGTG 1 cut(s) 310
BtsIMutI CAGTG 4 cut(s) 262, 310, 565, 600
Cac8I GCNNGC 1 cut(s) 481
CciI TCATGA 1 cut(s) 547
Cfr13I GGNCC 5 cut(s) 526, 593, 665, 666, 719
Csp6I GTAC 3 cut(s) 125, 496, 797
CviAII CATG 6 cut(s) 251, 317, 548, 682, 772, 832
CviQI GTAC 3 cut(s) 125, 496, 797
DdeI CTNAG 2 cut(s) 84, 730
DpnI GATC 5 cut(s) 99, 191, 342, 538, 599
DpnII GATC 5 cut(s) 97, 189, 340, 536, 597
DriI GACNNNNNGTC 1 cut(s) 725
Eam1105I GACNNNNNGTC 1 cut(s) 725
Eco24I GRGCYC 2 cut(s) 669, 793
Eco47I GGWCC 2 cut(s) 526, 719
Eco57I CTGAAG 2 cut(s) 78, 216
Eco81I CCTNAGG 1 cut(s) 84
Eco88I CYCGRG 1 cut(s) 39
EcoO109I RGGNCCY 2 cut(s) 666, 719
EcoRI GAATTC 1 cut(s) 511
EcoRII CCWGG 3 cut(s) 670, 799, 814
EcoT38I GRGCYC 2 cut(s) 669, 793
FaeI CATG 6 cut(s) 254, 320, 551, 685, 775, 835
FalI AAGNNNNNCTT 2 cut(s) 313, 345
FatI CATG 6 cut(s) 250, 316, 547, 681, 771, 831
FauI CCCGC 1 cut(s) 774
FauNDI CATATG 1 cut(s) 778
Fnu4HI GCNGC 6 cut(s) 117, 209, 212, 585, 621, 707
FokI GGATG 1 cut(s) 389
FriOI GRGCYC 2 cut(s) 669, 793
Fsp4HI GCNGC 6 cut(s) 117, 209, 212, 585, 621, 707
FspBI CTAG 2 cut(s) 140, 246
GluI GCNGC 6 cut(s) 117, 209, 212, 585, 621, 707
GsaI CCCAGC 1 cut(s) 666
GsuI CTGGAG 1 cut(s) 822
HaeIII GGCC 2 cut(s) 595, 667
HapII CCGG 2 cut(s) 529, 794
Hin1II CATG 6 cut(s) 254, 320, 551, 685, 775, 835
HincII GTYRAC 1 cut(s) 565
HindII GTYRAC 1 cut(s) 565
HinfI GANTC 4 cut(s) 37, 89, 308, 751
HpaII CCGG 2 cut(s) 529, 794
HphI GGTGA 2 cut(s) 434, 547
Hpy166II GTNNAC 4 cut(s) 284, 565, 692, 821
Hpy188I TCNGA 4 cut(s) 97, 235, 444, 840
Hpy188III TCNNGA 5 cut(s) 41, 83, 291, 344, 548
Hpy8I GTNNAC 4 cut(s) 284, 565, 692, 821
HpyAV CCTTC 1 cut(s) 257
HpyCH4III ACNGT 1 cut(s) 7
HpyCH4V TGCA 5 cut(s) 74, 116, 623, 692, 821
HpyF10VI GCNNNNNNNGC 3 cut(s) 335, 485, 617
HpyF3I CTNAG 2 cut(s) 84, 730
Hsp92II CATG 6 cut(s) 254, 320, 551, 685, 775, 835
KpnI GGTACC 1 cut(s) 800
Kzo9I GATC 5 cut(s) 97, 189, 340, 536, 597
LmnI GCTCC 2 cut(s) 32, 766
Lsp1109I GCAGC 5 cut(s) 128, 198, 596, 607, 718
MaeI CTAG 2 cut(s) 140, 246
MaeIII GTNAC 2 cut(s) 422, 454
MalI GATC 5 cut(s) 99, 191, 342, 538, 599
MboI GATC 5 cut(s) 97, 189, 340, 536, 597
MboII GAAGA 4 cut(s) 84, 219, 222, 386
MfeI CAATTG 1 cut(s) 711
MhlI GDGCHC 5 cut(s) 384, 669, 694, 793, 823
MluCI AATT 5 cut(s) 111, 223, 511, 576, 711
MlyI GAGTC 1 cut(s) 31
MseI TTAA 1 cut(s) 182
MslI CAYNNNNRTG 3 cut(s) 159, 255, 746
MspA1I CMGCKG 3 cut(s) 119, 211, 734
MspI CCGG 2 cut(s) 529, 794
MspR9I CCNGG 4 cut(s) 672, 794, 801, 816
MunI CAATTG 1 cut(s) 711
Mva1269I GAATGC 2 cut(s) 70, 543
MvaI CCWGG 3 cut(s) 672, 801, 816
MwoI GCNNNNNNNGC 3 cut(s) 335, 485, 617
NciI CCSGG 1 cut(s) 794
NdeI CATATG 1 cut(s) 778
NdeII GATC 5 cut(s) 97, 189, 340, 536, 597
NlaIII CATG 6 cut(s) 254, 320, 551, 685, 775, 835
NlaIV GGNNCC 7 cut(s) 268, 631, 667, 668, 721, 798, 837
NmuCI GTSAC 1 cut(s) 422
NspI RCATGY 1 cut(s) 685
OliI CACNNNNGTG 1 cut(s) 746
PaeR7I CTCGAG 1 cut(s) 39
PagI TCATGA 1 cut(s) 547
PasI CCCWGGG 1 cut(s) 671
PctI GAATGC 2 cut(s) 70, 543
PfeI GAWTC 3 cut(s) 89, 308, 751
PkrI GCNGC 6 cut(s) 118, 210, 213, 586, 622, 708
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
PpuMI RGGWCCY 1 cut(s) 719
Psp5II RGGWCCY 1 cut(s) 719
Psp6I CCWGG 3 cut(s) 670, 799, 814
PspFI CCCAGC 1 cut(s) 662
PspGI CCWGG 3 cut(s) 670, 799, 814
PspN4I GGNNCC 7 cut(s) 268, 631, 667, 668, 721, 798, 837
PspOMI GGGCCC 1 cut(s) 665
PspPI GGNCC 5 cut(s) 526, 593, 665, 666, 719
PspPPI RGGWCCY 1 cut(s) 719
PstI CTGCAG 1 cut(s) 625
PvuII CAGCTG 2 cut(s) 119, 734
RsaI GTAC 3 cut(s) 126, 497, 798
RsaNI GTAC 3 cut(s) 125, 496, 797
RseI CAYNNNNRTG 3 cut(s) 159, 255, 746
SaqAI TTAA 1 cut(s) 182
SatI GCNGC 6 cut(s) 117, 209, 212, 585, 621, 707
Sau3AI GATC 5 cut(s) 97, 189, 340, 536, 597
Sau96I GGNCC 5 cut(s) 526, 593, 665, 666, 719
ScaI AGTACT 1 cut(s) 497
SchI GAGTC 1 cut(s) 31
ScrFI CCNGG 4 cut(s) 672, 794, 801, 816
SduI GDGCHC 5 cut(s) 384, 669, 694, 793, 823
SfcI CTRYAG 2 cut(s) 298, 621
Sfr274I CTCGAG 1 cut(s) 39
SinI GGWCC 2 cut(s) 526, 719
SlaI CTCGAG 1 cut(s) 39
SmiMI CAYNNNNRTG 3 cut(s) 159, 255, 746
SmlI CTYRAG 3 cut(s) 39, 173, 588
SmoI CTYRAG 3 cut(s) 39, 173, 588
Sse9I AATT 5 cut(s) 111, 223, 511, 576, 711
SsiI CCGC 2 cut(s) 209, 767
SspMI CTAG 2 cut(s) 140, 246
StyD4I CCNGG 4 cut(s) 670, 792, 799, 814
TaaI ACNGT 1 cut(s) 7
TaqI TCGA 2 cut(s) 40, 192
TasI AATT 5 cut(s) 111, 223, 511, 576, 711
TatI WGTACW 2 cut(s) 124, 495
TauI GCSGC 1 cut(s) 211
TfiI GAWTC 3 cut(s) 89, 308, 751
Tru1I TTAA 1 cut(s) 182
Tru9I TTAA 1 cut(s) 182
TscAI CASTG 4 cut(s) 262, 310, 565, 607
TseFI GTSAC 1 cut(s) 422
TseI GCWGC 5 cut(s) 116, 211, 584, 620, 706
Tsp45I GTSAC 1 cut(s) 422
TspDTI ATGAA 4 cut(s) 276, 533, 536, 842
TspRI CASTG 4 cut(s) 262, 310, 565, 607
VneI GTGCAC 2 cut(s) 690, 819
VpaK11BI GGWCC 2 cut(s) 526, 719
XapI RAATTY 2 cut(s) 511, 576
XceI RCATGY 1 cut(s) 685
XcmI CCANNNNNNNNNTGG 1 cut(s) 194
XhoI CTCGAG 1 cut(s) 39
XspI CTAG 2 cut(s) 140, 246
ZrmI AGTACT 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.