Rroxscaffold_5G00387320
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0013465
Physical Location & Seq
Reverse (-)
66010834 .. 66017118
6285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00387320.1

Sequence Viewer

Length: 1182 bp
ATGAGTGTGGAGGAAGCGGTTGCTAGCTCCTTGTGGACTTGGGAGCAGGATAAGGCATTTGAGAATGCCCTGGCAACTTATCCCGAGGATGCTCCAGATCGTTGGGACAAAATTGCAGCTGATGTGGAAGGGAAAAACCTAGAGGAGATAAAGCATCATTATGAACTCTTACTTGATGATATAAGCCAGATCGAAGCTGGTTGTATTCCAGTGCCTTGCTACAATTCTTCTTCCGAGGGTTCAACAAGCCATGCCAGTGATGAAGGAACCAGTAAGAAGGGACACTACAGCAGCGAATCTAATCATGGAAGTAAGGCTTCAAGGGCAGATCAGGAACGCCGTAAGGGGATTGCTTGGACAGAGGATGAACACAGGCAATTTCTTCTAGGATTGGAAAAATATGGGAAAGGCGATTGGCGAAGTATATCACGGAACTTTGTGGTAACAAGAACACCCACCCAAGTGGCAAGCCATGCACAAAAGTATTTCATACGTTTGAATTCAATGAACAAGGACAGAAGGCGATCAAGCATCCATGACATCACAAGTGTCAACAATGGAGAAATTGCGGCAATCCAAGGGCCGATCACTGGTCAAGGAAATGGTTCTGCAGTAGGCCCATCTGGCTCTGCGAAATCAAGCAAACAATCTGCTGCTGGACCCCCGGGGGTTGGCATGTATGGTGCACCAACTATCGGGCAACCAATTGGAGGACCTCTTGTCTCAGCTGTTGGCACACCAGTGAATCTTGCTGGCCCTTCCCCACACATGGCATATGGTGTGAGAGCCCCGATGCCTCCTGGAGCACTTGTTCCTGGGGCACCAATGAACATGCCCCCCATGACATATCCTATGCCTCACACTGCTCATAGCTGTCAGTGGCAGGATCCTGAAATGGGGTCCTGTCCTCCTGGAACCATTTCTACAGACACCAGAACCCTCCAACCCAACCCAACCAAACCAAACCAGTGGTTCTTCGCCATTTCCGGCCAAAACTTGGACGCCCACAATTTCATCACCCCGCCATTATCCCGAGATCAAGGCTGCGCCGGAGTTATCGGAGTGACTGGCAGTGTGGGAAAGACCATGATAGCTCTGGCTCTTCAGACTTCCGAGAAACCTGTTTATGAGAGTCATGGCATGGGAATTGGAACAACCGAATTGGGGTGGCTTTGTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

393

Amino Acids

41.97

Weight (kDa)

6.0

Isoelectric Point (pI)

46.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 12 - 55 2e-06 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 118 - 163 1.4e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013465)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08520
fragaria_vesca FvH4_4g37210 FvH4_4g37210
malus_domestica MD00G1126800.v1.1 MD13G1002700.v1.1
prunus_persica Prupe.1G349700_v2.0.a1
pyrus_communis pycom13g00230 pycom16g00150
rosa_chinensis RchiOBHm_Chr4g0446981
rosa_laevigata RLG00000005614
rosa_multiflora Rmu_sc0001753.1_g000003
rosa_roxburghii Rroxscaffold_5G00387320
rosa_rugosa Rorug04G0376800
rosa_samantha Rh4AG438400 Rh4BG447400 Rh4CG464500 Rh4DG446000
rosa_wichuraiana Rw4G037490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 820
AccB7I CCANNNNNTGG 1 cut(s) 997
AciI CCGC 3 cut(s) 17, 569, 1022
AclWI GGATC 2 cut(s) 881, 894
AcoI YGGCCR 1 cut(s) 988
AcsI RAATTY 1 cut(s) 499
AcuI CTGAAG 1 cut(s) 1088
AcyI GRCGYC 1 cut(s) 1002
AfiI CCNNNNNNNGG 8 cut(s) 590, 671, 695, 710, 769, 896, 997, 1164
AgsI TTSAA 4 cut(s) 243, 321, 499, 504
AhdI GACNNNNNGTC 1 cut(s) 719
AjnI CCWGG 4 cut(s) 69, 799, 814, 910
AleI CACNNNNGTG 2 cut(s) 461, 740
AloI GAACNNNNNNTCC 2 cut(s) 795, 827
AluBI AGCT 6 cut(s) 27, 119, 197, 728, 873, 1094
AluI AGCT 6 cut(s) 27, 119, 197, 728, 873, 1094
Alw21I GWGCWC 2 cut(s) 688, 808
Alw26I GTCTC 1 cut(s) 727
Alw44I GTGCAC 1 cut(s) 684
AlwI GGATC 2 cut(s) 881, 894
Ama87I CYCGRG 3 cut(s) 83, 664, 1032
AoxI GGCC 4 cut(s) 581, 616, 754, 988
ApaLI GTGCAC 1 cut(s) 684
ApeKI GCWGC 4 cut(s) 116, 291, 653, 1044
ApoI RAATTY 1 cut(s) 499
Asp700I GAANNNNTTC 2 cut(s) 604, 919
AspLEI GCGC 1 cut(s) 1049
AspS9I GGNCC 6 cut(s) 581, 617, 659, 713, 755, 900
AsuC2I CCSGG 2 cut(s) 665, 666
AsuHPI GGTGA 1 cut(s) 1009
AsuNHI GCTAGC 1 cut(s) 23
AvaI CYCGRG 3 cut(s) 83, 664, 1032
AvaII GGWCC 3 cut(s) 659, 713, 900
BaeGI GKGCMC 2 cut(s) 688, 823
BamHI GGATCC 1 cut(s) 886
BanI GGYRCC 1 cut(s) 820
BanII GRGCYC 1 cut(s) 790
BarI GAAGNNNNNNTAC 2 cut(s) 269, 301
Bbv12I GWGCWC 2 cut(s) 688, 808
BbvI GCAGC 4 cut(s) 128, 303, 640, 1031
BccI CCATC 1 cut(s) 628
BceAI ACGGC 1 cut(s) 324
BciT130I CCWGG 4 cut(s) 71, 801, 816, 912
BcnI CCSGG 2 cut(s) 665, 666
BcoDI GTCTC 1 cut(s) 727
BfaI CTAG 3 cut(s) 24, 140, 386
BfmI CTRYAG 3 cut(s) 286, 609, 924
BglI GCCNNNNNGGC 1 cut(s) 624
BisI GCNGC 5 cut(s) 117, 292, 570, 654, 1045
BlsI GCNGC 5 cut(s) 118, 293, 571, 655, 1046
Bme1390I CCNGG 6 cut(s) 71, 665, 666, 801, 816, 912
Bme18I GGWCC 3 cut(s) 659, 713, 900
BmeRI GACNNNNNGTC 1 cut(s) 719
BmeT110I CYCGRG 3 cut(s) 83, 664, 1032
BmgT120I GGNCC 6 cut(s) 581, 617, 659, 713, 755, 900
BmiI GGNNCC 6 cut(s) 268, 661, 822, 888, 901, 916
BmrFI CCNGG 6 cut(s) 71, 665, 666, 801, 816, 912
BmsI GCATC 4 cut(s) 79, 163, 540, 783
BmtI GCTAGC 1 cut(s) 27
BpmI CTGGAG 2 cut(s) 78, 822
BpuMI CCSGG 2 cut(s) 665, 666
BsaHI GRCGYC 1 cut(s) 1002
BsaJI CCNNGG 8 cut(s) 69, 84, 234, 577, 663, 664, 665, 815
BsaXI ACNNNNNCTCC 2 cut(s) 795, 825
Bsc4I CCNNNNNNNGG 8 cut(s) 590, 671, 695, 710, 769, 896, 997, 1164
Bse1I ACTGG 7 cut(s) 209, 255, 270, 595, 740, 967, 1072
BseBI CCWGG 4 cut(s) 71, 801, 816, 912
BseDI CCNNGG 8 cut(s) 69, 84, 234, 577, 663, 664, 665, 815
BseGI GGATG 3 cut(s) 94, 370, 531
BseLI CCNNNNNNNGG 8 cut(s) 590, 671, 695, 710, 769, 896, 997, 1164
BseMII CTCAG 1 cut(s) 738
BseNI ACTGG 7 cut(s) 209, 255, 270, 595, 740, 967, 1072
BseRI GAGGAG 1 cut(s) 158
BseSI GKGCMC 2 cut(s) 688, 823
BseXI GCAGC 4 cut(s) 128, 303, 640, 1031
BshFI GGCC 4 cut(s) 583, 618, 756, 990
BshNI GGYRCC 1 cut(s) 820
BsiHKAI GWGCWC 2 cut(s) 688, 808
BsiHKCI CYCGRG 3 cut(s) 83, 664, 1032
BsiSI CCGG 3 cut(s) 665, 987, 1050
BslFI GGGAC 2 cut(s) 119, 294
BslI CCNNNNNNNGG 8 cut(s) 590, 671, 695, 710, 769, 896, 997, 1164
BsmAI GTCTC 1 cut(s) 727
BsmFI GGGAC 2 cut(s) 119, 294
BsmI GAATGC 1 cut(s) 70
BsnI GGCC 4 cut(s) 583, 618, 756, 990
BsoBI CYCGRG 3 cut(s) 83, 664, 1032
Bsp1286I GDGCHC 4 cut(s) 688, 790, 808, 823
Bsp143I GATC 7 cut(s) 97, 189, 328, 524, 585, 886, 1036
BspACI CCGC 3 cut(s) 17, 569, 1022
BspANI GGCC 4 cut(s) 583, 618, 756, 990
BspCNI CTCAG 1 cut(s) 737
BspLI GGNNCC 6 cut(s) 268, 661, 822, 888, 901, 916
BspMAI CTGCAG 1 cut(s) 613
BspOI GCTAGC 1 cut(s) 27
BspPI GGATC 2 cut(s) 881, 894
BspQI GCTCTTC 1 cut(s) 1107
BspT107I GGYRCC 1 cut(s) 820
BsrI ACTGG 7 cut(s) 209, 255, 270, 595, 740, 967, 1072
BssECI CCNNGG 8 cut(s) 69, 84, 234, 577, 663, 664, 665, 815
BssMI GATC 7 cut(s) 97, 189, 328, 524, 585, 886, 1036
BssNI GRCGYC 1 cut(s) 1002
BssT1I CCWWGG 1 cut(s) 577
Bst2UI CCWGG 4 cut(s) 71, 801, 816, 912
Bst6I CTCTTC 1 cut(s) 1107
BstACI GRCGYC 1 cut(s) 1002
BstAPI GCANNNNNTGC 1 cut(s) 473
BstC8I GCNNGC 3 cut(s) 25, 469, 754
BstDEI CTNAG 1 cut(s) 724
BstF5I GGATG 3 cut(s) 94, 370, 531
BstHHI GCGC 1 cut(s) 1049
BstKTI GATC 7 cut(s) 100, 192, 331, 527, 588, 889, 1039
BstMAI GTCTC 1 cut(s) 727
BstMBI GATC 7 cut(s) 97, 189, 328, 524, 585, 886, 1036
BstMWI GCNNNNNNNGC 3 cut(s) 323, 473, 624
BstNI CCWGG 4 cut(s) 71, 801, 816, 912
BstNSI RCATGY 2 cut(s) 679, 835
BstSCI CCNGG 6 cut(s) 69, 663, 664, 799, 814, 910
BstSFI CTRYAG 3 cut(s) 286, 609, 924
BstSLI GKGCMC 2 cut(s) 688, 823
BstV1I GCAGC 4 cut(s) 128, 303, 640, 1031
BstX2I RGATCY 1 cut(s) 886
BstXI CCANNNNNNTGG 3 cut(s) 102, 463, 969
BstYI RGATCY 1 cut(s) 886
BsuRI GGCC 4 cut(s) 583, 618, 756, 990
BtsCI GGATG 3 cut(s) 94, 370, 531
BtsI GCAGTG 2 cut(s) 861, 1078
BtsIMutI CAGTG 8 cut(s) 216, 262, 588, 747, 861, 884, 974, 1078
Cac8I GCNNGC 3 cut(s) 25, 469, 754
CfoI GCGC 1 cut(s) 1049
Cfr13I GGNCC 6 cut(s) 581, 617, 659, 713, 755, 900
Cfr9I CCCGGG 1 cut(s) 664
CseI GACGC 1 cut(s) 1010
DdeI CTNAG 1 cut(s) 724
DpnI GATC 7 cut(s) 99, 191, 330, 526, 587, 888, 1038
DpnII GATC 7 cut(s) 97, 189, 328, 524, 585, 886, 1036
DriI GACNNNNNGTC 1 cut(s) 719
EaeI YGGCCR 1 cut(s) 988
Eam1104I CTCTTC 1 cut(s) 1107
Eam1105I GACNNNNNGTC 1 cut(s) 719
EarI CTCTTC 1 cut(s) 1107
Eco130I CCWWGG 1 cut(s) 577
Eco24I GRGCYC 1 cut(s) 790
Eco47I GGWCC 3 cut(s) 659, 713, 900
Eco57I CTGAAG 1 cut(s) 1088
Eco88I CYCGRG 3 cut(s) 83, 664, 1032
EcoO109I RGGNCCY 2 cut(s) 713, 900
EcoRI GAATTC 1 cut(s) 499
EcoRII CCWGG 4 cut(s) 69, 799, 814, 910
EcoT14I CCWWGG 1 cut(s) 577
EcoT38I GRGCYC 1 cut(s) 790
ErhI CCWWGG 1 cut(s) 577
FalI AAGNNNNNCTT 2 cut(s) 301, 333
FaqI GGGAC 2 cut(s) 119, 294
FauI CCCGC 1 cut(s) 1029
FauNDI CATATG 1 cut(s) 775
Fnu4HI GCNGC 5 cut(s) 117, 292, 570, 654, 1045
FokI GGATG 3 cut(s) 101, 377, 518
FriOI GRGCYC 1 cut(s) 790
Fsp4HI GCNGC 5 cut(s) 117, 292, 570, 654, 1045
FspBI CTAG 3 cut(s) 24, 140, 386
GlaI GCGC 1 cut(s) 1048
GluI GCNGC 5 cut(s) 117, 292, 570, 654, 1045
GsuI CTGGAG 2 cut(s) 78, 822
HaeIII GGCC 4 cut(s) 583, 618, 756, 990
HapII CCGG 3 cut(s) 665, 987, 1050
HgaI GACGC 1 cut(s) 1010
HhaI GCGC 1 cut(s) 1049
Hin1I GRCGYC 1 cut(s) 1002
Hin6I GCGC 1 cut(s) 1047
HinP1I GCGC 1 cut(s) 1047
HincII GTYRAC 1 cut(s) 553
HindII GTYRAC 1 cut(s) 553
HinfI GANTC 3 cut(s) 296, 745, 1132
HpaII CCGG 3 cut(s) 665, 987, 1050
HphI GGTGA 1 cut(s) 1009
Hpy166II GTNNAC 3 cut(s) 36, 553, 686
Hpy188I TCNGA 4 cut(s) 235, 1061, 1107, 1114
Hpy188III TCNNGA 5 cut(s) 83, 95, 332, 890, 1032
Hpy8I GTNNAC 3 cut(s) 36, 553, 686
HpyAV CCTTC 5 cut(s) 122, 257, 271, 513, 768
HpyCH4IV ACGT 1 cut(s) 493
HpyCH4V TGCA 4 cut(s) 116, 476, 611, 686
HpyF10VI GCNNNNNNNGC 3 cut(s) 323, 473, 624
HpyF3I CTNAG 1 cut(s) 724
HpySE526I ACGT 1 cut(s) 493
Hsp92I GRCGYC 1 cut(s) 1002
HspAI GCGC 1 cut(s) 1047
Kzo9I GATC 7 cut(s) 97, 189, 328, 524, 585, 886, 1036
LguI GCTCTTC 1 cut(s) 1107
LmnI GCTCC 4 cut(s) 32, 43, 97, 803
Lsp1109I GCAGC 4 cut(s) 128, 303, 640, 1031
LweI GCATC 4 cut(s) 79, 163, 540, 783
MaeI CTAG 3 cut(s) 24, 140, 386
MaeII ACGT 1 cut(s) 493
MaeIII GTNAC 2 cut(s) 442, 1063
MalI GATC 7 cut(s) 99, 191, 330, 526, 587, 888, 1038
MboI GATC 7 cut(s) 97, 189, 328, 524, 585, 886, 1036
MboII GAAGA 5 cut(s) 219, 222, 374, 967, 1094
MfeI CAATTG 1 cut(s) 705
MflI RGATCY 1 cut(s) 886
MhlI GDGCHC 4 cut(s) 688, 790, 808, 823
MluCI AATT 9 cut(s) 111, 223, 377, 499, 564, 705, 1009, 1146, 1160
MlyI GAGTC 1 cut(s) 1141
MmeI TCCRAC 1 cut(s) 967
MroXI GAANNNNTTC 2 cut(s) 604, 919
MslI CAYNNNNRTG 4 cut(s) 159, 255, 461, 740
MspA1I CMGCKG 2 cut(s) 119, 728
MspI CCGG 3 cut(s) 665, 987, 1050
MspR9I CCNGG 6 cut(s) 71, 665, 666, 801, 816, 912
MunI CAATTG 1 cut(s) 705
Mva1269I GAATGC 1 cut(s) 70
MvaI CCWGG 4 cut(s) 71, 801, 816, 912
MwoI GCNNNNNNNGC 3 cut(s) 323, 473, 624
NciI CCSGG 2 cut(s) 665, 666
NdeI CATATG 1 cut(s) 775
NdeII GATC 7 cut(s) 97, 189, 328, 524, 585, 886, 1036
NheI GCTAGC 1 cut(s) 23
NlaIV GGNNCC 6 cut(s) 268, 661, 822, 888, 901, 916
NmuCI GTSAC 1 cut(s) 1063
NspI RCATGY 2 cut(s) 679, 835
OliI CACNNNNGTG 2 cut(s) 461, 740
PciSI GCTCTTC 1 cut(s) 1107
PctI GAATGC 1 cut(s) 70
PdmI GAANNNNTTC 2 cut(s) 604, 919
PfeI GAWTC 2 cut(s) 296, 745
PflMI CCANNNNNTGG 1 cut(s) 997
PfoI TCCNGGA 2 cut(s) 799, 910
PkrI GCNGC 5 cut(s) 118, 293, 571, 655, 1046
PleI GAGTC 1 cut(s) 1140
PpsI GAGTC 1 cut(s) 1140
PpuMI RGGWCCY 2 cut(s) 713, 900
Psp5II RGGWCCY 2 cut(s) 713, 900
Psp6I CCWGG 4 cut(s) 69, 799, 814, 910
PspGI CCWGG 4 cut(s) 69, 799, 814, 910
PspN4I GGNNCC 6 cut(s) 268, 661, 822, 888, 901, 916
PspPI GGNCC 6 cut(s) 581, 617, 659, 713, 755, 900
PspPPI RGGWCCY 2 cut(s) 713, 900
PsrI GAACNNNNNNTAC 2 cut(s) 907, 939
PstI CTGCAG 1 cut(s) 613
PsuI RGATCY 1 cut(s) 886
PvuII CAGCTG 2 cut(s) 119, 728
RseI CAYNNNNRTG 4 cut(s) 159, 255, 461, 740
SapI GCTCTTC 1 cut(s) 1107
SatI GCNGC 5 cut(s) 117, 292, 570, 654, 1045
Sau3AI GATC 7 cut(s) 97, 189, 328, 524, 585, 886, 1036
Sau96I GGNCC 6 cut(s) 581, 617, 659, 713, 755, 900
SchI GAGTC 1 cut(s) 1141
ScrFI CCNGG 6 cut(s) 71, 665, 666, 801, 816, 912
SduI GDGCHC 4 cut(s) 688, 790, 808, 823
SfaNI GCATC 4 cut(s) 79, 163, 540, 783
SfcI CTRYAG 3 cut(s) 286, 609, 924
SinI GGWCC 3 cut(s) 659, 713, 900
SmaI CCCGGG 1 cut(s) 666
SmiMI CAYNNNNRTG 4 cut(s) 159, 255, 461, 740
Sse9I AATT 9 cut(s) 111, 223, 377, 499, 564, 705, 1009, 1146, 1160
SsiI CCGC 3 cut(s) 17, 569, 1022
SspMI CTAG 3 cut(s) 24, 140, 386
StyD4I CCNGG 6 cut(s) 69, 663, 664, 799, 814, 910
StyI CCWWGG 1 cut(s) 577
TaiI ACGT 1 cut(s) 496
TaqI TCGA 1 cut(s) 192
TasI AATT 9 cut(s) 111, 223, 377, 499, 564, 705, 1009, 1146, 1160
TauI GCSGC 1 cut(s) 572
TfiI GAWTC 2 cut(s) 296, 745
TscAI CASTG 8 cut(s) 216, 262, 595, 747, 868, 884, 974, 1078
TseFI GTSAC 1 cut(s) 1063
TseI GCWGC 4 cut(s) 116, 291, 653, 1044
Tsp45I GTSAC 1 cut(s) 1063
TspDTI ATGAA 7 cut(s) 177, 276, 381, 478, 521, 842, 1003
TspGWI ACGGA 1 cut(s) 445
TspMI CCCGGG 1 cut(s) 664
TspRI CASTG 8 cut(s) 216, 262, 595, 747, 868, 884, 974, 1078
Van91I CCANNNNNTGG 1 cut(s) 997
VneI GTGCAC 1 cut(s) 684
VpaK11BI GGWCC 3 cut(s) 659, 713, 900
XapI RAATTY 1 cut(s) 499
XceI RCATGY 2 cut(s) 679, 835
XcmI CCANNNNNNNNNTGG 2 cut(s) 194, 1093
XmaI CCCGGG 1 cut(s) 664
XmnI GAANNNNTTC 2 cut(s) 604, 919
XspI CTAG 3 cut(s) 24, 140, 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.