Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006811

Physical Location & Seq

Genomic Coordinates Reverse (-)

2873660 .. 2874989

Gene Structure 1330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G09240.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGTCTGAGAACGGAAAAAGGAAAGACGAGGATGTCAGAGCATCAGACGACCGCGACGAATCTGAGACCCACGCGCCGCCTAAGAAAGTGGCAAAGCCAGCGGACGAGATTGAGGACATCTTCATCTGCAATTTAGATAAGAATCGGAGAGTCTTTGTGAGGAATTGCAATGGGAGGATTTGGATTGCCATTCGTCAGTTCTTTGTCAAGGACGGTATAACTTTACCTTGTAATAGCAAGCAAGGTATCTCTCTAAGCCTGGAACAGTGGAACGATCTTCGGAACCATGAGGAGGATATCGATAAGGCCCTCTCTGAGCTTTCTGAGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060260 GO:0060261 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000142 GO:2000144 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC4

Protein Analysis

110

Amino Acids

12.7

Weight (kDa)

5.07

Isoelectric Point (pI)

51.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC4	PF02229	43 - 82	1.5e-08	Transcriptional Coactivator p15 (PC4)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0006811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09240 AT5G09240 AT5G09240 AT5G09250 AT5G09250 AT5G09250 AT5G09250 AT5G09250
fragaria_vesca	FvH4_1g24880 FvH4_1g24880 FvH4_1g24880
malus_domestica	MD01G1006400.v1.1 MD15G1135200.v1.1
prunus_persica	Prupe.4G275800_v2.0.a1 Prupe.4G275800_v2.0.a1
pyrus_communis	pycom01g00780 pycom15g12190
rosa_chinensis	RchiOBHm_Chr2g0122541
rosa_laevigata	RLG00000018683
rosa_multiflora	Rmu_sc0003832.1_g000005 Rmu_sc0006704.1_g000005
rosa_roxburghii	Rroxscaffold_2G00121490
rosa_rugosa	Rorug02G0239400
rosa_samantha	Rh2BG306800 Rh2CG284900
rosa_wichuraiana	Rw2G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	32
AccII	CGCG	2 cut(s)	54, 74
AciI	CCGC	3 cut(s)	52, 77, 101
AfiI	CCNNNNNNNGG	1 cut(s)	292
AjnI	CCWGG	1 cut(s)	258
AluBI	AGCT	1 cut(s)	319
AluI	AGCT	1 cut(s)	319
Alw26I	GTCTC	1 cut(s)	59
AoxI	GGCC	1 cut(s)	306
AspLEI	GCGC	1 cut(s)	76
AspS9I	GGNCC	1 cut(s)	307
BciT130I	CCWGG	1 cut(s)	260
BcoDI	GTCTC	1 cut(s)	59
BisI	GCNGC	1 cut(s)	77
BlsI	GCNGC	1 cut(s)	78
Bme1390I	CCNGG	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	307
BmiI	GGNNCC	1 cut(s)	284
BmrFI	CCNGG	1 cut(s)	260
BmsI	GCATC	1 cut(s)	50
Bsa29I	ATCGAT	1 cut(s)	300
BsaBI	GATNNNNATC	1 cut(s)	141
BsaI	GGTCTC	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	1 cut(s)	292
Bse3DI	GCAATG	1 cut(s)	175
Bse8I	GATNNNNATC	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	260
BseCI	ATCGAT	1 cut(s)	300
BseGI	GGATG	1 cut(s)	37
BseJI	GATNNNNATC	1 cut(s)	141
BseLI	CCNNNNNNNGG	1 cut(s)	292
BseMI	GCAATG	1 cut(s)	175
BseMII	CTCAG	3 cut(s)	54, 306, 315
BseRI	GAGGAG	1 cut(s)	305
Bsh1236I	CGCG	2 cut(s)	54, 74
Bsh1285I	CGRYCG	1 cut(s)	52
BshFI	GGCC	1 cut(s)	308
BshVI	ATCGAT	1 cut(s)	300
BsiEI	CGRYCG	1 cut(s)	52
BslI	CCNNNNNNNGG	1 cut(s)	292
BsmAI	GTCTC	1 cut(s)	59
BsnI	GGCC	1 cut(s)	308
Bso31I	GGTCTC	1 cut(s)	59
Bsp143I	GATC	1 cut(s)	274
BspACI	CCGC	3 cut(s)	52, 77, 101
BspANI	GGCC	1 cut(s)	308
BspCNI	CTCAG	3 cut(s)	55, 307, 316
BspDI	ATCGAT	1 cut(s)	300
BspFNI	CGCG	2 cut(s)	54, 74
BspLI	GGNNCC	1 cut(s)	284
BspTNI	GGTCTC	1 cut(s)	59
BsrDI	GCAATG	1 cut(s)	175
BssMI	GATC	1 cut(s)	274
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	2 cut(s)	215, 267
BstC8I	GCNNGC	2 cut(s)	99, 239
BstDEI	CTNAG	6 cut(s)	6, 63, 81, 254, 315, 324
BstF5I	GGATG	1 cut(s)	37
BstFNI	CGCG	2 cut(s)	54, 74
BstHHI	GCGC	1 cut(s)	76
BstKTI	GATC	1 cut(s)	277
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	1 cut(s)	274
BstMCI	CGRYCG	1 cut(s)	52
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNI	CCWGG	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	258
BstUI	CGCG	2 cut(s)	54, 74
Bsu15I	ATCGAT	1 cut(s)	300
BsuRI	GGCC	1 cut(s)	308
BsuTUI	ATCGAT	1 cut(s)	300
BtsCI	GGATG	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	272
Cac8I	GCNNGC	2 cut(s)	99, 239
CfoI	GCGC	1 cut(s)	76
Cfr13I	GGNCC	1 cut(s)	307
ClaI	ATCGAT	1 cut(s)	300
CviAII	CATG	1 cut(s)	287
CviJI	RGCY	4 cut(s)	97, 258, 308, 319
CviKI_1	RGCY	4 cut(s)	97, 258, 308, 319
DdeI	CTNAG	6 cut(s)	6, 63, 81, 254, 315, 324
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
DrdI	GACNNNNNNGTC	1 cut(s)	32
DseDI	GACNNNNNNGTC	1 cut(s)	32
Eco31I	GGTCTC	1 cut(s)	59
Eco32I	GATATC	1 cut(s)	298
EcoO109I	RGGNCCY	1 cut(s)	307
EcoRII	CCWGG	1 cut(s)	258
EcoRV	GATATC	1 cut(s)	298
FaeI	CATG	1 cut(s)	290
FaiI	YATR	2 cut(s)	218, 288
FatI	CATG	1 cut(s)	286
Fnu4HI	GCNGC	1 cut(s)	77
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	77
GlaI	GCGC	1 cut(s)	75
GluI	GCNGC	1 cut(s)	77
HaeIII	GGCC	1 cut(s)	308
HhaI	GCGC	1 cut(s)	76
Hin1II	CATG	1 cut(s)	290
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HinfI	GANTC	3 cut(s)	59, 142, 150
Hpy188I	TCNGA	8 cut(s)	7, 38, 46, 64, 147, 282, 316, 325
Hpy99I	CGWCG	1 cut(s)	59
HpyCH4III	ACNGT	2 cut(s)	215, 267
HpyCH4V	TGCA	2 cut(s)	129, 168
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	6 cut(s)	6, 63, 81, 254, 315, 324
Hsp92II	CATG	1 cut(s)	290
HspAI	GCGC	1 cut(s)	74
Kzo9I	GATC	1 cut(s)	274
LpnPI	CCDG	3 cut(s)	111, 245, 272
LweI	GCATC	1 cut(s)	50
MalI	GATC	1 cut(s)	276
MboI	GATC	1 cut(s)	274
MboII	GAAGA	2 cut(s)	112, 269
MluCI	AATT	2 cut(s)	130, 163
MlyI	GAGTC	1 cut(s)	159
MnlI	CCTC	8 cut(s)	22, 106, 153, 168, 283, 286, 319, 320
MseI	TTAA	1 cut(s)	331
MspA1I	CMGCKG	1 cut(s)	101
MspR9I	CCNGG	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	260
MvnI	CGCG	2 cut(s)	54, 74
MwoI	GCNNNNNNNGC	1 cut(s)	98
NdeII	GATC	1 cut(s)	274
NlaIII	CATG	1 cut(s)	290
NlaIV	GGNNCC	1 cut(s)	284
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PfeI	GAWTC	2 cut(s)	59, 142
PkrI	GCNGC	1 cut(s)	78
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	258
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	284
PspPI	GGNCC	1 cut(s)	307
SaqAI	TTAA	1 cut(s)	331
SatI	GCNGC	1 cut(s)	77
Sau3AI	GATC	1 cut(s)	274
Sau96I	GGNCC	1 cut(s)	307
SchI	GAGTC	1 cut(s)	159
ScrFI	CCNGG	1 cut(s)	260
SetI	ASST	4 cut(s)	229, 247, 321, 330
SfaNI	GCATC	1 cut(s)	50
Sse9I	AATT	2 cut(s)	130, 163
SsiI	CCGC	3 cut(s)	52, 77, 101
StyD4I	CCNGG	1 cut(s)	258
TaaI	ACNGT	2 cut(s)	215, 267
TaqI	TCGA	1 cut(s)	300
TasI	AATT	2 cut(s)	130, 163
TauI	GCSGC	1 cut(s)	79
TfiI	GAWTC	2 cut(s)	59, 142
Tru1I	TTAA	1 cut(s)	331
Tru9I	TTAA	1 cut(s)	331
TscAI	CASTG	1 cut(s)	272
TspDTI	ATGAA	1 cut(s)	112
TspGWI	ACGGA	1 cut(s)	27
TspRI	CASTG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.