Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006811

Physical Location & Seq

Genomic Coordinates Reverse (-)

54132108 .. 54134210

Gene Structure 2103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00121490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGTCGTCTTGGAGAGGAAAGCGAAAGGACGAGGAGGACCACGCGTCCGACGGCGACTCTGAGGGCCACGCGCCCCCAAAAAGACCGCCAAAGAGACTCCTCCGACGACTCAGCCGAGGACATCGTCGTCTGCGAGGTCACCGCCTCTCTCTCTTTCTACTGATATCAAAGAACAGGAGGGTGACCGTCAGGAACTGGAACGGCAAGGTTATTGTCGACATTCGCGAGTTCTATGTCAAGGATGGCAAGCAACTGCCTGGAAAGAAAGGAATCTCACTACCGATGGATCAGTGGAATGTTCTTCGGAGTCATGTGGACGAGATAGACAAGGTTGTTAACGAGACTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060260 GO:0060261 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000142 GO:2000144 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC4

Protein Analysis

116

Amino Acids

13.51

Weight (kDa)

10.74

Isoelectric Point (pI)

59.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC4	PF02229	55 - 104	4.7e-26	Transcriptional Coactivator p15 (PC4)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0006811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09240 AT5G09240 AT5G09240 AT5G09250 AT5G09250 AT5G09250 AT5G09250 AT5G09250
fragaria_vesca	FvH4_1g24880 FvH4_1g24880 FvH4_1g24880
malus_domestica	MD01G1006400.v1.1 MD15G1135200.v1.1
prunus_persica	Prupe.4G275800_v2.0.a1 Prupe.4G275800_v2.0.a1
pyrus_communis	pycom01g00780 pycom15g12190
rosa_chinensis	RchiOBHm_Chr2g0122541
rosa_laevigata	RLG00000018683
rosa_multiflora	Rmu_sc0003832.1_g000005 Rmu_sc0006704.1_g000005
rosa_roxburghii	Rroxscaffold_2G00121490
rosa_rugosa	Rorug02G0239400
rosa_samantha	Rh2BG306800 Rh2CG284900
rosa_wichuraiana	Rw2G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	126
AccI	GTMKAC	1 cut(s)	216
AccII	CGCG	3 cut(s)	44, 71, 225
AciI	CCGC	2 cut(s)	86, 142
AclWI	GGATC	1 cut(s)	294
AflIII	ACRYGT	1 cut(s)	42
AhdI	GACNNNNNGTC	1 cut(s)	43
AjnI	CCWGG	1 cut(s)	256
Alw26I	GTCTC	2 cut(s)	88, 335
AlwI	GGATC	1 cut(s)	294
AlwNI	CAGNNNCTG	1 cut(s)	195
AoxI	GGCC	1 cut(s)	64
AspLEI	GCGC	1 cut(s)	73
AspS9I	GGNCC	2 cut(s)	37, 64
AsuHPI	GGTGA	2 cut(s)	131, 193
AvaII	GGWCC	1 cut(s)	37
BccI	CCATC	2 cut(s)	236, 277
BceAI	ACGGC	2 cut(s)	67, 217
BciT130I	CCWGG	1 cut(s)	258
BcoDI	GTCTC	2 cut(s)	88, 335
Bme1390I	CCNGG	1 cut(s)	258
Bme18I	GGWCC	1 cut(s)	37
BmeRI	GACNNNNNGTC	1 cut(s)	43
BmgT120I	GGNCC	2 cut(s)	37, 64
BmrFI	CCNGG	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	115
Bse1I	ACTGG	2 cut(s)	200, 349
BseBI	CCWGG	1 cut(s)	258
BseDI	CCNNGG	1 cut(s)	115
BseGI	GGATG	1 cut(s)	247
BseMII	CTCAG	2 cut(s)	51, 124
BseNI	ACTGG	2 cut(s)	200, 349
BseRI	GAGGAG	2 cut(s)	47, 89
Bsh1236I	CGCG	3 cut(s)	44, 71, 225
BshFI	GGCC	1 cut(s)	66
BsmAI	GTCTC	2 cut(s)	88, 335
BsnI	GGCC	1 cut(s)	66
Bsp143I	GATC	1 cut(s)	286
Bsp68I	TCGCGA	1 cut(s)	225
BspACI	CCGC	2 cut(s)	86, 142
BspANI	GGCC	1 cut(s)	66
BspCNI	CTCAG	2 cut(s)	52, 123
BspFNI	CGCG	3 cut(s)	44, 71, 225
BspPI	GGATC	1 cut(s)	294
BsrI	ACTGG	2 cut(s)	200, 349
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	1 cut(s)	286
Bst2UI	CCWGG	1 cut(s)	258
Bst4CI	ACNGT	1 cut(s)	187
BstC8I	GCNNGC	1 cut(s)	248
BstDEI	CTNAG	2 cut(s)	60, 110
BstEII	GGTNACC	2 cut(s)	137, 181
BstF5I	GGATG	1 cut(s)	247
BstFNI	CGCG	3 cut(s)	44, 71, 225
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	1 cut(s)	289
BstMAI	GTCTC	2 cut(s)	88, 335
BstMBI	GATC	1 cut(s)	286
BstNI	CCWGG	1 cut(s)	258
BstPI	GGTNACC	2 cut(s)	137, 181
BstSCI	CCNGG	1 cut(s)	256
BstUI	CGCG	3 cut(s)	44, 71, 225
BsuRI	GGCC	1 cut(s)	66
BtsCI	GGATG	1 cut(s)	247
BtsIMutI	CAGTG	1 cut(s)	296
BtuMI	TCGCGA	1 cut(s)	225
Cac8I	GCNNGC	1 cut(s)	248
CaiI	CAGNNNCTG	1 cut(s)	195
CfoI	GCGC	1 cut(s)	73
Cfr13I	GGNCC	2 cut(s)	37, 64
CseI	GACGC	1 cut(s)	33
CviAII	CATG	1 cut(s)	311
CviJI	RGCY	2 cut(s)	66, 114
CviKI_1	RGCY	2 cut(s)	66, 114
DdeI	CTNAG	2 cut(s)	60, 110
DpnI	GATC	1 cut(s)	288
DpnII	GATC	1 cut(s)	286
DrdI	GACNNNNNNGTC	1 cut(s)	126
DriI	GACNNNNNGTC	1 cut(s)	43
DseDI	GACNNNNNNGTC	1 cut(s)	126
Eam1105I	GACNNNNNGTC	1 cut(s)	43
Eco32I	GATATC	1 cut(s)	165
Eco47I	GGWCC	1 cut(s)	37
Eco91I	GGTNACC	2 cut(s)	137, 181
EcoO65I	GGTNACC	2 cut(s)	137, 181
EcoRII	CCWGG	1 cut(s)	256
EcoRV	GATATC	1 cut(s)	165
FaeI	CATG	1 cut(s)	314
FaiI	YATR	2 cut(s)	234, 312
FatI	CATG	1 cut(s)	310
FblI	GTMKAC	1 cut(s)	216
FokI	GGATG	1 cut(s)	254
GlaI	GCGC	1 cut(s)	72
HaeIII	GGCC	1 cut(s)	66
HgaI	GACGC	1 cut(s)	33
HhaI	GCGC	1 cut(s)	73
Hin1II	CATG	1 cut(s)	314
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HincII	GTYRAC	2 cut(s)	217, 337
HindII	GTYRAC	2 cut(s)	217, 337
HinfI	GANTC	5 cut(s)	56, 96, 108, 270, 307
HpaI	GTTAAC	1 cut(s)	337
HphI	GGTGA	2 cut(s)	131, 193
Hpy166II	GTNNAC	3 cut(s)	217, 316, 337
Hpy188I	TCNGA	4 cut(s)	49, 61, 104, 306
Hpy188III	TCNNGA	2 cut(s)	190, 224
Hpy8I	GTNNAC	3 cut(s)	217, 316, 337
Hpy99I	CGWCG	3 cut(s)	53, 108, 129
HpyCH4III	ACNGT	1 cut(s)	187
HpyF3I	CTNAG	2 cut(s)	60, 110
Hsp92II	CATG	1 cut(s)	314
HspAI	GCGC	1 cut(s)	71
KspAI	GTTAAC	1 cut(s)	337
Kzo9I	GATC	1 cut(s)	286
LpnPI	CCDG	6 cut(s)	160, 175, 181, 243, 270, 330
MaeIII	GTNAC	2 cut(s)	137, 181
MalI	GATC	1 cut(s)	288
MboI	GATC	1 cut(s)	286
MboII	GAAGA	1 cut(s)	293
MluI	ACGCGT	1 cut(s)	42
MlyI	GAGTC	4 cut(s)	50, 90, 102, 316
MmeI	TCCRAC	2 cut(s)	72, 127
MnlI	CCTC	9 cut(s)	8, 25, 28, 55, 110, 110, 128, 155, 171
MseI	TTAA	1 cut(s)	336
MspR9I	CCNGG	1 cut(s)	258
MvaI	CCWGG	1 cut(s)	258
MvnI	CGCG	3 cut(s)	44, 71, 225
NdeII	GATC	1 cut(s)	286
NlaIII	CATG	1 cut(s)	314
NmeAIII	GCCGAG	1 cut(s)	140
NmuCI	GTSAC	2 cut(s)	137, 181
NruI	TCGCGA	1 cut(s)	225
PcsI	WCGNNNNNNNCGW	3 cut(s)	112, 130, 222
PfeI	GAWTC	1 cut(s)	270
PflFI	GACNNNGTC	1 cut(s)	123
PleI	GAGTC	4 cut(s)	50, 90, 102, 315
PpsI	GAGTC	4 cut(s)	50, 90, 102, 315
Psp6I	CCWGG	1 cut(s)	256
PspEI	GGTNACC	2 cut(s)	137, 181
PspGI	CCWGG	1 cut(s)	256
PspPI	GGNCC	2 cut(s)	37, 64
PstNI	CAGNNNCTG	1 cut(s)	195
PsyI	GACNNNGTC	1 cut(s)	123
RruI	TCGCGA	1 cut(s)	225
SalI	GTCGAC	1 cut(s)	215
SaqAI	TTAA	1 cut(s)	336
Sau3AI	GATC	1 cut(s)	286
Sau96I	GGNCC	2 cut(s)	37, 64
SchI	GAGTC	4 cut(s)	50, 90, 102, 316
ScrFI	CCNGG	1 cut(s)	258
SetI	ASST	3 cut(s)	139, 210, 333
SinI	GGWCC	1 cut(s)	37
SsiI	CCGC	2 cut(s)	86, 142
StyD4I	CCNGG	1 cut(s)	256
TaaI	ACNGT	1 cut(s)	187
TaqI	TCGA	1 cut(s)	216
TfiI	GAWTC	1 cut(s)	270
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TscAI	CASTG	1 cut(s)	296
TseFI	GTSAC	2 cut(s)	137, 181
Tsp45I	GTSAC	2 cut(s)	137, 181
TspRI	CASTG	1 cut(s)	296
Tth111I	GACNNNGTC	1 cut(s)	123
VpaK11BI	GGWCC	1 cut(s)	37
XmiI	GTMKAC	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.