Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0006811

Physical Location & Seq

Genomic Coordinates Forward (+)

16665944 .. 16670243

Gene Structure 4300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g24880.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGTCGTCGTGGAGAGGAAAGCGGAAGGACGAGGAGAACCACGCGTCCGACGGCGACACTGAGGCCCACGAGCCCCCCAAAAAGACCGCCAAAAGAGACTCCTCCTCTGACGACTCTTCCGACGACATCGTCGTCTGCGAGATATCAAAGAACAGGAGAGTGACAGTGAGGAACTGGAACGGCAAGGTTATTGTGGACATTCGCGAGTTCTATGTCAAGGATGGCAAGCAAATGCCTGGGAAGAAAGGAATCTCACTACCGATGGATCAGTGGAATGTTCTTCGGAGTCATGTGGATGAGATTGACAAGGTTGTTAACGAGACTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060260 GO:0060261 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000142 GO:2000144 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC4

Protein Analysis

110

Amino Acids

12.43

Weight (kDa)

6.29

Isoelectric Point (pI)

49.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC4	PF02229	46 - 97	7.1e-27	Transcriptional Coactivator p15 (PC4)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09240 AT5G09240 AT5G09240 AT5G09250 AT5G09250 AT5G09250 AT5G09250 AT5G09250
fragaria_vesca	FvH4_1g24880 FvH4_1g24880 FvH4_1g24880
malus_domestica	MD01G1006400.v1.1 MD15G1135200.v1.1
prunus_persica	Prupe.4G275800_v2.0.a1 Prupe.4G275800_v2.0.a1
pyrus_communis	pycom01g00780 pycom15g12190
rosa_chinensis	RchiOBHm_Chr2g0122541
rosa_laevigata	RLG00000018683
rosa_multiflora	Rmu_sc0003832.1_g000005 Rmu_sc0006704.1_g000005
rosa_roxburghii	Rroxscaffold_2G00121490
rosa_rugosa	Rorug02G0239400
rosa_samantha	Rh2BG306800 Rh2CG284900
rosa_wichuraiana	Rw2G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	128, 131
AccII	CGCG	2 cut(s)	44, 204
AciI	CCGC	2 cut(s)	22, 87
AclWI	GGATC	1 cut(s)	273
AflIII	ACRYGT	1 cut(s)	42
AjnI	CCWGG	1 cut(s)	235
AloI	GAACNNNNNNTCC	2 cut(s)	29, 61
Alw26I	GTCTC	2 cut(s)	90, 314
AlwI	GGATC	1 cut(s)	273
AoxI	GGCC	1 cut(s)	63
AspS9I	GGNCC	1 cut(s)	64
BanII	GRGCYC	1 cut(s)	75
BauI	CACGAG	1 cut(s)	68
BccI	CCATC	2 cut(s)	215, 256
BceAI	ACGGC	2 cut(s)	67, 196
BciT130I	CCWGG	1 cut(s)	237
BcoDI	GTCTC	2 cut(s)	90, 314
Bme1390I	CCNGG	1 cut(s)	237
BmgT120I	GGNCC	1 cut(s)	64
BmrFI	CCNGG	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	236
Bse1I	ACTGG	1 cut(s)	179
BseBI	CCWGG	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	236
BseGI	GGATG	2 cut(s)	226, 301
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	1 cut(s)	179
BseRI	GAGGAG	3 cut(s)	47, 91, 94
Bsh1236I	CGCG	2 cut(s)	44, 204
BshFI	GGCC	1 cut(s)	65
BsmAI	GTCTC	2 cut(s)	90, 314
BsnI	GGCC	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	1 cut(s)	265
Bsp68I	TCGCGA	1 cut(s)	204
BspACI	CCGC	2 cut(s)	22, 87
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	1 cut(s)	52
BspFNI	CGCG	2 cut(s)	44, 204
BspPI	GGATC	1 cut(s)	273
BsrI	ACTGG	1 cut(s)	179
BssECI	CCNNGG	1 cut(s)	236
BssMI	GATC	1 cut(s)	265
BssSI	CACGAG	1 cut(s)	68
Bst2BI	CACGAG	1 cut(s)	68
Bst2UI	CCWGG	1 cut(s)	237
Bst4CI	ACNGT	1 cut(s)	166
Bst6I	CTCTTC	1 cut(s)	121
BstC8I	GCNNGC	1 cut(s)	227
BstDEI	CTNAG	2 cut(s)	60, 327
BstF5I	GGATG	2 cut(s)	226, 301
BstFNI	CGCG	2 cut(s)	44, 204
BstKTI	GATC	1 cut(s)	268
BstMAI	GTCTC	2 cut(s)	90, 314
BstMBI	GATC	1 cut(s)	265
BstNI	CCWGG	1 cut(s)	237
BstSCI	CCNGG	1 cut(s)	235
BstUI	CGCG	2 cut(s)	44, 204
BsuRI	GGCC	1 cut(s)	65
BtsCI	GGATG	2 cut(s)	226, 301
BtsIMutI	CAGTG	3 cut(s)	57, 171, 275
BtuMI	TCGCGA	1 cut(s)	204
Cac8I	GCNNGC	1 cut(s)	227
Cfr13I	GGNCC	1 cut(s)	64
CseI	GACGC	1 cut(s)	33
CviAII	CATG	1 cut(s)	290
CviJI	RGCY	2 cut(s)	65, 73
CviKI_1	RGCY	2 cut(s)	65, 73
DdeI	CTNAG	2 cut(s)	60, 327
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
DrdI	GACNNNNNNGTC	2 cut(s)	128, 131
DseDI	GACNNNNNNGTC	2 cut(s)	128, 131
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
Eco24I	GRGCYC	1 cut(s)	75
Eco32I	GATATC	1 cut(s)	144
EcoRII	CCWGG	1 cut(s)	235
EcoRV	GATATC	1 cut(s)	144
EcoT38I	GRGCYC	1 cut(s)	75
FaeI	CATG	1 cut(s)	293
FaiI	YATR	2 cut(s)	213, 291
FatI	CATG	1 cut(s)	289
FokI	GGATG	2 cut(s)	233, 308
FriOI	GRGCYC	1 cut(s)	75
HaeIII	GGCC	1 cut(s)	65
HgaI	GACGC	1 cut(s)	33
Hin1II	CATG	1 cut(s)	293
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HinfI	GANTC	4 cut(s)	98, 113, 249, 286
HpaI	GTTAAC	1 cut(s)	316
Hpy166II	GTNNAC	2 cut(s)	196, 316
Hpy188I	TCNGA	4 cut(s)	49, 109, 121, 285
Hpy188III	TCNNGA	1 cut(s)	203
Hpy8I	GTNNAC	2 cut(s)	196, 316
Hpy99I	CGWCG	4 cut(s)	10, 53, 125, 134
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	1 cut(s)	166
HpyF3I	CTNAG	2 cut(s)	60, 327
Hsp92II	CATG	1 cut(s)	293
KspAI	GTTAAC	1 cut(s)	316
Kzo9I	GATC	1 cut(s)	265
LpnPI	CCDG	4 cut(s)	139, 160, 222, 249
MaeIII	GTNAC	1 cut(s)	160
MalI	GATC	1 cut(s)	267
MboI	GATC	1 cut(s)	265
MboII	GAAGA	3 cut(s)	108, 253, 272
MhlI	GDGCHC	1 cut(s)	75
MluI	ACGCGT	1 cut(s)	42
MlyI	GAGTC	3 cut(s)	92, 107, 295
MmeI	TCCRAC	2 cut(s)	72, 144
MnlI	CCTC	6 cut(s)	8, 25, 55, 112, 115, 162
MseI	TTAA	1 cut(s)	315
MslI	CAYNNNNRTG	1 cut(s)	294
MspR9I	CCNGG	1 cut(s)	237
MvaI	CCWGG	1 cut(s)	237
MvnI	CGCG	2 cut(s)	44, 204
NdeII	GATC	1 cut(s)	265
NlaIII	CATG	1 cut(s)	293
NmuCI	GTSAC	1 cut(s)	160
NruI	TCGCGA	1 cut(s)	204
PcsI	WCGNNNNNNNCGW	3 cut(s)	117, 129, 135
PfeI	GAWTC	1 cut(s)	249
PflFI	GACNNNGTC	1 cut(s)	128
PleI	GAGTC	3 cut(s)	92, 107, 294
PpsI	GAGTC	3 cut(s)	92, 107, 294
Psp6I	CCWGG	1 cut(s)	235
PspGI	CCWGG	1 cut(s)	235
PspPI	GGNCC	1 cut(s)	64
PsyI	GACNNNGTC	1 cut(s)	128
RruI	TCGCGA	1 cut(s)	204
RseI	CAYNNNNRTG	1 cut(s)	294
SaqAI	TTAA	1 cut(s)	315
Sau3AI	GATC	1 cut(s)	265
Sau96I	GGNCC	1 cut(s)	64
SchI	GAGTC	3 cut(s)	92, 107, 295
ScrFI	CCNGG	1 cut(s)	237
SduI	GDGCHC	1 cut(s)	75
SetI	ASST	2 cut(s)	189, 312
SmiMI	CAYNNNNRTG	1 cut(s)	294
SsiI	CCGC	2 cut(s)	22, 87
StyD4I	CCNGG	1 cut(s)	235
TaaI	ACNGT	1 cut(s)	166
TfiI	GAWTC	1 cut(s)	249
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	3 cut(s)	64, 171, 275
TseFI	GTSAC	1 cut(s)	160
Tsp45I	GTSAC	1 cut(s)	160
TspRI	CASTG	3 cut(s)	64, 171, 275
Tth111I	GACNNNGTC	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.