Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0006811

Physical Location & Seq

Genomic Coordinates Forward (+)

35698041 .. 35699886

Gene Structure 1846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG306800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGTCGTCTTGGAGAGGAAAGCGAAAGGAGCAGGAGGGCCACGCGTCCGACGGCGACTCTGAGGGCCACGCGCCCCCCAAAAAGACCGCCAAAAGAGACTCCGACGACGACGACGACTCAGCCGAGGACATCGTCGTCTGCGAGATATCAAAGAACAGGAGGGTGACGGTCAGGAACTGGAACGGCAAGGTTATTGTCGACATTCGCGAGTTCTATGTCAAGGAGGGCAAGCAATTGCCTGGAAAGAAAGGAATCTCACTACCGATGGATCAGTGGAATGTTCTTCGGAGTCATGTGGACGAGATTGACAAGGTTGTTAACGAGACTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060260 GO:0060261 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000142 GO:2000144 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC4

Protein Analysis

110

Amino Acids

12.45

Weight (kDa)

5.92

Isoelectric Point (pI)

46.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC4	PF02229	47 - 98	1.8e-26	Transcriptional Coactivator p15 (PC4)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09240 AT5G09240 AT5G09240 AT5G09250 AT5G09250 AT5G09250 AT5G09250 AT5G09250
fragaria_vesca	FvH4_1g24880 FvH4_1g24880 FvH4_1g24880
malus_domestica	MD01G1006400.v1.1 MD15G1135200.v1.1
prunus_persica	Prupe.4G275800_v2.0.a1 Prupe.4G275800_v2.0.a1
pyrus_communis	pycom01g00780 pycom15g12190
rosa_chinensis	RchiOBHm_Chr2g0122541
rosa_laevigata	RLG00000018683
rosa_multiflora	Rmu_sc0003832.1_g000005 Rmu_sc0006704.1_g000005
rosa_roxburghii	Rroxscaffold_2G00121490
rosa_rugosa	Rorug02G0239400
rosa_samantha	Rh2BG306800 Rh2CG284900
rosa_wichuraiana	Rw2G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	134
AccI	GTMKAC	1 cut(s)	198
AccII	CGCG	3 cut(s)	44, 71, 207
AciI	CCGC	1 cut(s)	87
AclWI	GGATC	1 cut(s)	276
AflIII	ACRYGT	1 cut(s)	42
AjnI	CCWGG	1 cut(s)	238
Alw26I	GTCTC	2 cut(s)	90, 317
AlwI	GGATC	1 cut(s)	276
AlwNI	CAGNNNCTG	1 cut(s)	177
AoxI	GGCC	2 cut(s)	37, 64
AspLEI	GCGC	1 cut(s)	73
AspS9I	GGNCC	2 cut(s)	37, 64
AsuHPI	GGTGA	1 cut(s)	175
BccI	CCATC	1 cut(s)	259
BceAI	ACGGC	2 cut(s)	67, 199
BciT130I	CCWGG	1 cut(s)	240
BcoDI	GTCTC	2 cut(s)	90, 317
Bme1390I	CCNGG	1 cut(s)	240
BmgT120I	GGNCC	2 cut(s)	37, 64
BmrFI	CCNGG	1 cut(s)	240
BsaJI	CCNNGG	1 cut(s)	123
Bse1I	ACTGG	2 cut(s)	182, 331
BseBI	CCWGG	1 cut(s)	240
BseDI	CCNNGG	1 cut(s)	123
BseMII	CTCAG	2 cut(s)	51, 132
BseNI	ACTGG	2 cut(s)	182, 331
Bsh1236I	CGCG	3 cut(s)	44, 71, 207
BshFI	GGCC	2 cut(s)	39, 66
BsmAI	GTCTC	2 cut(s)	90, 317
BsnI	GGCC	2 cut(s)	39, 66
Bsp143I	GATC	1 cut(s)	268
Bsp68I	TCGCGA	1 cut(s)	207
BspACI	CCGC	1 cut(s)	87
BspANI	GGCC	2 cut(s)	39, 66
BspCNI	CTCAG	2 cut(s)	52, 131
BspFNI	CGCG	3 cut(s)	44, 71, 207
BspPI	GGATC	1 cut(s)	276
BsrI	ACTGG	2 cut(s)	182, 331
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	1 cut(s)	268
Bst2UI	CCWGG	1 cut(s)	240
Bst4CI	ACNGT	1 cut(s)	169
BstC8I	GCNNGC	1 cut(s)	230
BstDEI	CTNAG	2 cut(s)	60, 118
BstFNI	CGCG	3 cut(s)	44, 71, 207
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	1 cut(s)	271
BstMAI	GTCTC	2 cut(s)	90, 317
BstMBI	GATC	1 cut(s)	268
BstMWI	GCNNNNNNNGC	1 cut(s)	28
BstNI	CCWGG	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	238
BstUI	CGCG	3 cut(s)	44, 71, 207
BsuRI	GGCC	2 cut(s)	39, 66
BtsIMutI	CAGTG	1 cut(s)	278
BtuMI	TCGCGA	1 cut(s)	207
Cac8I	GCNNGC	1 cut(s)	230
CaiI	CAGNNNCTG	1 cut(s)	177
CfoI	GCGC	1 cut(s)	73
Cfr13I	GGNCC	2 cut(s)	37, 64
CseI	GACGC	1 cut(s)	33
CviAII	CATG	1 cut(s)	293
CviJI	RGCY	3 cut(s)	39, 66, 122
CviKI_1	RGCY	3 cut(s)	39, 66, 122
DdeI	CTNAG	2 cut(s)	60, 118
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
DrdI	GACNNNNNNGTC	1 cut(s)	134
DseDI	GACNNNNNNGTC	1 cut(s)	134
Eco32I	GATATC	1 cut(s)	147
EcoRII	CCWGG	1 cut(s)	238
EcoRV	GATATC	1 cut(s)	147
FaeI	CATG	1 cut(s)	296
FaiI	YATR	2 cut(s)	216, 294
FatI	CATG	1 cut(s)	292
FblI	GTMKAC	1 cut(s)	198
GlaI	GCGC	1 cut(s)	72
HaeIII	GGCC	2 cut(s)	39, 66
HgaI	GACGC	1 cut(s)	33
HhaI	GCGC	1 cut(s)	73
Hin1II	CATG	1 cut(s)	296
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HincII	GTYRAC	2 cut(s)	199, 319
HindII	GTYRAC	2 cut(s)	199, 319
HinfI	GANTC	5 cut(s)	56, 98, 116, 252, 289
HpaI	GTTAAC	1 cut(s)	319
HphI	GGTGA	1 cut(s)	175
Hpy166II	GTNNAC	3 cut(s)	199, 298, 319
Hpy188I	TCNGA	4 cut(s)	49, 61, 103, 288
Hpy188III	TCNNGA	2 cut(s)	172, 206
Hpy8I	GTNNAC	3 cut(s)	199, 298, 319
Hpy99I	CGWCG	6 cut(s)	53, 107, 110, 113, 116, 137
HpyCH4III	ACNGT	1 cut(s)	169
HpyF10VI	GCNNNNNNNGC	1 cut(s)	28
HpyF3I	CTNAG	2 cut(s)	60, 118
Hsp92II	CATG	1 cut(s)	296
HspAI	GCGC	1 cut(s)	71
KspAI	GTTAAC	1 cut(s)	319
Kzo9I	GATC	1 cut(s)	268
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	7 cut(s)	17, 142, 157, 163, 225, 252, 312
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	1 cut(s)	275
MfeI	CAATTG	1 cut(s)	233
MluCI	AATT	1 cut(s)	233
MluI	ACGCGT	1 cut(s)	42
MlyI	GAGTC	4 cut(s)	50, 92, 110, 298
MmeI	TCCRAC	2 cut(s)	72, 126
MnlI	CCTC	6 cut(s)	8, 28, 55, 118, 153, 217
MseI	TTAA	1 cut(s)	318
MspR9I	CCNGG	1 cut(s)	240
MunI	CAATTG	1 cut(s)	233
MvaI	CCWGG	1 cut(s)	240
MvnI	CGCG	3 cut(s)	44, 71, 207
MwoI	GCNNNNNNNGC	1 cut(s)	28
NdeII	GATC	1 cut(s)	268
NlaIII	CATG	1 cut(s)	296
NmeAIII	GCCGAG	1 cut(s)	148
NmuCI	GTSAC	1 cut(s)	163
NruI	TCGCGA	1 cut(s)	207
PcsI	WCGNNNNNNNCGW	4 cut(s)	111, 120, 138, 204
PfeI	GAWTC	1 cut(s)	252
PflFI	GACNNNGTC	1 cut(s)	131
PleI	GAGTC	4 cut(s)	50, 92, 110, 297
PpsI	GAGTC	4 cut(s)	50, 92, 110, 297
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PspPI	GGNCC	2 cut(s)	37, 64
PstNI	CAGNNNCTG	1 cut(s)	177
PsyI	GACNNNGTC	1 cut(s)	131
RruI	TCGCGA	1 cut(s)	207
SalI	GTCGAC	1 cut(s)	197
SaqAI	TTAA	1 cut(s)	318
Sau3AI	GATC	1 cut(s)	268
Sau96I	GGNCC	2 cut(s)	37, 64
SchI	GAGTC	4 cut(s)	50, 92, 110, 298
ScrFI	CCNGG	1 cut(s)	240
SetI	ASST	2 cut(s)	192, 315
Sse9I	AATT	1 cut(s)	233
SsiI	CCGC	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	238
TaaI	ACNGT	1 cut(s)	169
TaqI	TCGA	1 cut(s)	198
TasI	AATT	1 cut(s)	233
TfiI	GAWTC	1 cut(s)	252
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	1 cut(s)	278
TseFI	GTSAC	1 cut(s)	163
Tsp45I	GTSAC	1 cut(s)	163
TspRI	CASTG	1 cut(s)	278
Tth111I	GACNNNGTC	1 cut(s)	131
XmiI	GTMKAC	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.