Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0006811

Physical Location & Seq

Genomic Coordinates Forward (+)

34718296 .. 34720699

Gene Structure 2404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G023700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGTCGTCTTGGAGAGGAAAGCGAAAGGACGAGGAGGACCACGCGTCCGACGGCGACTCTGAGGGCCACGCGCCCCCCAAAAAGACCGCCAAAAGAGACTCCTCCGACGACTCAGCCGAGGACATCGTCGTCTGCGAGATATCAAAGAACAGGAGGGTGACGGTCAGGAACTGGAACGGCAAGGTTATTGTCGACATTCGCGAGTTCTATGTCAAGGATGGCAAGCAACTGCCTGGAAAGAAAGGAATCTCACTACCGATGGATCAGTGGAATGTTCTTCGGAGTCATGTGGACGAGATTGACAAGGTTGTTAACGAGACTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060260 GO:0060261 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000142 GO:2000144 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC4

Protein Analysis

108

Amino Acids

12.22

Weight (kDa)

6.29

Isoelectric Point (pI)

50.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC4	PF02229	45 - 96	3.6e-27	Transcriptional Coactivator p15 (PC4)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09240 AT5G09240 AT5G09240 AT5G09250 AT5G09250 AT5G09250 AT5G09250 AT5G09250
fragaria_vesca	FvH4_1g24880 FvH4_1g24880 FvH4_1g24880
malus_domestica	MD01G1006400.v1.1 MD15G1135200.v1.1
prunus_persica	Prupe.4G275800_v2.0.a1 Prupe.4G275800_v2.0.a1
pyrus_communis	pycom01g00780 pycom15g12190
rosa_chinensis	RchiOBHm_Chr2g0122541
rosa_laevigata	RLG00000018683
rosa_multiflora	Rmu_sc0003832.1_g000005 Rmu_sc0006704.1_g000005
rosa_roxburghii	Rroxscaffold_2G00121490
rosa_rugosa	Rorug02G0239400
rosa_samantha	Rh2BG306800 Rh2CG284900
rosa_wichuraiana	Rw2G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	128
AccI	GTMKAC	1 cut(s)	192
AccII	CGCG	3 cut(s)	44, 71, 201
AciI	CCGC	1 cut(s)	87
AclWI	GGATC	1 cut(s)	270
AflIII	ACRYGT	1 cut(s)	42
AhdI	GACNNNNNGTC	1 cut(s)	43
AjnI	CCWGG	1 cut(s)	232
Alw26I	GTCTC	2 cut(s)	90, 311
AlwI	GGATC	1 cut(s)	270
AlwNI	CAGNNNCTG	1 cut(s)	171
AoxI	GGCC	1 cut(s)	64
AspLEI	GCGC	1 cut(s)	73
AspS9I	GGNCC	2 cut(s)	37, 64
AsuHPI	GGTGA	1 cut(s)	169
AvaII	GGWCC	1 cut(s)	37
BccI	CCATC	2 cut(s)	212, 253
BceAI	ACGGC	2 cut(s)	67, 193
BciT130I	CCWGG	1 cut(s)	234
BcoDI	GTCTC	2 cut(s)	90, 311
Bme1390I	CCNGG	1 cut(s)	234
Bme18I	GGWCC	1 cut(s)	37
BmeRI	GACNNNNNGTC	1 cut(s)	43
BmgT120I	GGNCC	2 cut(s)	37, 64
BmrFI	CCNGG	1 cut(s)	234
BsaJI	CCNNGG	1 cut(s)	117
Bse1I	ACTGG	2 cut(s)	176, 325
BseBI	CCWGG	1 cut(s)	234
BseDI	CCNNGG	1 cut(s)	117
BseGI	GGATG	1 cut(s)	223
BseMII	CTCAG	2 cut(s)	51, 126
BseNI	ACTGG	2 cut(s)	176, 325
BseRI	GAGGAG	2 cut(s)	47, 91
Bsh1236I	CGCG	3 cut(s)	44, 71, 201
BshFI	GGCC	1 cut(s)	66
BsmAI	GTCTC	2 cut(s)	90, 311
BsnI	GGCC	1 cut(s)	66
Bsp143I	GATC	1 cut(s)	262
Bsp68I	TCGCGA	1 cut(s)	201
BspACI	CCGC	1 cut(s)	87
BspANI	GGCC	1 cut(s)	66
BspCNI	CTCAG	2 cut(s)	52, 125
BspFNI	CGCG	3 cut(s)	44, 71, 201
BspPI	GGATC	1 cut(s)	270
BsrI	ACTGG	2 cut(s)	176, 325
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	1 cut(s)	262
Bst2UI	CCWGG	1 cut(s)	234
Bst4CI	ACNGT	1 cut(s)	163
BstC8I	GCNNGC	1 cut(s)	224
BstDEI	CTNAG	2 cut(s)	60, 112
BstF5I	GGATG	1 cut(s)	223
BstFNI	CGCG	3 cut(s)	44, 71, 201
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	1 cut(s)	265
BstMAI	GTCTC	2 cut(s)	90, 311
BstMBI	GATC	1 cut(s)	262
BstNI	CCWGG	1 cut(s)	234
BstSCI	CCNGG	1 cut(s)	232
BstUI	CGCG	3 cut(s)	44, 71, 201
BsuRI	GGCC	1 cut(s)	66
BtsCI	GGATG	1 cut(s)	223
BtsIMutI	CAGTG	1 cut(s)	272
BtuMI	TCGCGA	1 cut(s)	201
Cac8I	GCNNGC	1 cut(s)	224
CaiI	CAGNNNCTG	1 cut(s)	171
CfoI	GCGC	1 cut(s)	73
Cfr13I	GGNCC	2 cut(s)	37, 64
CseI	GACGC	1 cut(s)	33
CviAII	CATG	1 cut(s)	287
CviJI	RGCY	2 cut(s)	66, 116
CviKI_1	RGCY	2 cut(s)	66, 116
DdeI	CTNAG	2 cut(s)	60, 112
DpnI	GATC	1 cut(s)	264
DpnII	GATC	1 cut(s)	262
DrdI	GACNNNNNNGTC	1 cut(s)	128
DriI	GACNNNNNGTC	1 cut(s)	43
DseDI	GACNNNNNNGTC	1 cut(s)	128
Eam1105I	GACNNNNNGTC	1 cut(s)	43
Eco32I	GATATC	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	232
EcoRV	GATATC	1 cut(s)	141
FaeI	CATG	1 cut(s)	290
FaiI	YATR	2 cut(s)	210, 288
FatI	CATG	1 cut(s)	286
FblI	GTMKAC	1 cut(s)	192
FokI	GGATG	1 cut(s)	230
GlaI	GCGC	1 cut(s)	72
HaeIII	GGCC	1 cut(s)	66
HgaI	GACGC	1 cut(s)	33
HhaI	GCGC	1 cut(s)	73
Hin1II	CATG	1 cut(s)	290
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HincII	GTYRAC	2 cut(s)	193, 313
HindII	GTYRAC	2 cut(s)	193, 313
HinfI	GANTC	5 cut(s)	56, 98, 110, 246, 283
HpaI	GTTAAC	1 cut(s)	313
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	3 cut(s)	193, 292, 313
Hpy188I	TCNGA	4 cut(s)	49, 61, 106, 282
Hpy188III	TCNNGA	2 cut(s)	166, 200
Hpy8I	GTNNAC	3 cut(s)	193, 292, 313
Hpy99I	CGWCG	3 cut(s)	53, 110, 131
HpyCH4III	ACNGT	1 cut(s)	163
HpyF3I	CTNAG	2 cut(s)	60, 112
Hsp92II	CATG	1 cut(s)	290
HspAI	GCGC	1 cut(s)	71
KspAI	GTTAAC	1 cut(s)	313
Kzo9I	GATC	1 cut(s)	262
LpnPI	CCDG	6 cut(s)	136, 151, 157, 219, 246, 306
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	1 cut(s)	264
MboI	GATC	1 cut(s)	262
MboII	GAAGA	1 cut(s)	269
MluI	ACGCGT	1 cut(s)	42
MlyI	GAGTC	4 cut(s)	50, 92, 104, 292
MmeI	TCCRAC	2 cut(s)	72, 129
MnlI	CCTC	7 cut(s)	8, 25, 28, 55, 112, 112, 147
MseI	TTAA	1 cut(s)	312
MspR9I	CCNGG	1 cut(s)	234
MvaI	CCWGG	1 cut(s)	234
MvnI	CGCG	3 cut(s)	44, 71, 201
NdeII	GATC	1 cut(s)	262
NlaIII	CATG	1 cut(s)	290
NmeAIII	GCCGAG	1 cut(s)	142
NmuCI	GTSAC	1 cut(s)	157
NruI	TCGCGA	1 cut(s)	201
PcsI	WCGNNNNNNNCGW	3 cut(s)	114, 132, 198
PfeI	GAWTC	1 cut(s)	246
PflFI	GACNNNGTC	1 cut(s)	125
PleI	GAGTC	4 cut(s)	50, 92, 104, 291
PpsI	GAGTC	4 cut(s)	50, 92, 104, 291
Psp6I	CCWGG	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	232
PspPI	GGNCC	2 cut(s)	37, 64
PstNI	CAGNNNCTG	1 cut(s)	171
PsyI	GACNNNGTC	1 cut(s)	125
RruI	TCGCGA	1 cut(s)	201
SalI	GTCGAC	1 cut(s)	191
SaqAI	TTAA	1 cut(s)	312
Sau3AI	GATC	1 cut(s)	262
Sau96I	GGNCC	2 cut(s)	37, 64
SchI	GAGTC	4 cut(s)	50, 92, 104, 292
ScrFI	CCNGG	1 cut(s)	234
SetI	ASST	2 cut(s)	186, 309
SinI	GGWCC	1 cut(s)	37
SsiI	CCGC	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	232
TaaI	ACNGT	1 cut(s)	163
TaqI	TCGA	1 cut(s)	192
TfiI	GAWTC	1 cut(s)	246
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TscAI	CASTG	1 cut(s)	272
TseFI	GTSAC	1 cut(s)	157
Tsp45I	GTSAC	1 cut(s)	157
TspRI	CASTG	1 cut(s)	272
Tth111I	GACNNNGTC	1 cut(s)	125
VpaK11BI	GGWCC	1 cut(s)	37
XmiI	GTMKAC	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.