Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0006811

Physical Location & Seq

Genomic Coordinates Reverse (-)

749193 .. 749734

Gene Structure 542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g00780.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGTCGTGGAGAGGGAAGAGAAAAGATGAGGACGATCACGCATCGGAAGGGGACTCTGAGGGCCACGCGCCACCCAAAAAGGCCTCCAAGAGAGACACGGACTCCGACTCCTCCGACGACATCACTGTCTGCGAGATTTCCAAGAATAGAAGGGTAAGCGTGAGGAACTGGAATGGCAAGGTTGTGGTTGACATTCGCGAGTTCTATGTCAAGGATGGCAAGCAAATGCCTGGAAAAAAGGGTAACCTTTCCCTTTTAACATTTTATTTTTCTCTATTCTATTCGATAATTCAAGTGGTTGTATTTGCTTGCAATTCTACTCTTTCAGGGTTTATACTGTCTATTTGCTATATTAGGTTTTTGTATTTCGATCATATTTGGAGAATTTATGATTTGTGCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060260 GO:0060261 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000142 GO:2000144 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC4

Protein Analysis

135

Amino Acids

15.49

Weight (kDa)

8.33

Isoelectric Point (pI)

53.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09240 AT5G09240 AT5G09240 AT5G09250 AT5G09250 AT5G09250 AT5G09250 AT5G09250
fragaria_vesca	FvH4_1g24880 FvH4_1g24880 FvH4_1g24880
malus_domestica	MD01G1006400.v1.1 MD15G1135200.v1.1
prunus_persica	Prupe.4G275800_v2.0.a1 Prupe.4G275800_v2.0.a1
pyrus_communis	pycom01g00780 pycom15g12190
rosa_chinensis	RchiOBHm_Chr2g0122541
rosa_laevigata	RLG00000018683
rosa_multiflora	Rmu_sc0003832.1_g000005 Rmu_sc0006704.1_g000005
rosa_roxburghii	Rroxscaffold_2G00121490
rosa_rugosa	Rorug02G0239400
rosa_samantha	Rh2BG306800 Rh2CG284900
rosa_wichuraiana	Rw2G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	403
AasI	GACNNNNNNGTC	1 cut(s)	125
AccII	CGCG	2 cut(s)	68, 198
AcsI	RAATTY	1 cut(s)	384
AgsI	TTSAA	1 cut(s)	293
AjnI	CCWGG	1 cut(s)	229
Alw26I	GTCTC	1 cut(s)	87
AoxI	GGCC	2 cut(s)	61, 81
ApoI	RAATTY	1 cut(s)	384
AspLEI	GCGC	1 cut(s)	70
AspS9I	GGNCC	1 cut(s)	61
BccI	CCATC	1 cut(s)	209
BciT130I	CCWGG	1 cut(s)	231
BcoDI	GTCTC	1 cut(s)	87
Bme1390I	CCNGG	1 cut(s)	231
BmgT120I	GGNCC	1 cut(s)	61
BmrFI	CCNGG	1 cut(s)	231
BmsI	GCATC	1 cut(s)	50
BsaXI	ACNNNNNCTCC	4 cut(s)	86, 92, 116, 122
Bse1I	ACTGG	1 cut(s)	173
BseBI	CCWGG	1 cut(s)	231
BseGI	GGATG	1 cut(s)	220
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	173
BseRI	GAGGAG	1 cut(s)	100
Bsh1236I	CGCG	2 cut(s)	68, 198
BshFI	GGCC	2 cut(s)	63, 83
BslFI	GGGAC	1 cut(s)	65
BsmAI	GTCTC	1 cut(s)	87
BsmFI	GGGAC	1 cut(s)	65
BsnI	GGCC	2 cut(s)	63, 83
Bsp143I	GATC	2 cut(s)	34, 370
Bsp68I	TCGCGA	1 cut(s)	198
BspANI	GGCC	2 cut(s)	63, 83
BspCNI	CTCAG	1 cut(s)	49
BspFNI	CGCG	2 cut(s)	68, 198
BsrI	ACTGG	1 cut(s)	173
BssMI	GATC	2 cut(s)	34, 370
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	2 cut(s)	127, 339
Bst6I	CTCTTC	1 cut(s)	11
BstC8I	GCNNGC	2 cut(s)	221, 310
BstDEI	CTNAG	1 cut(s)	57
BstEII	GGTNACC	1 cut(s)	242
BstF5I	GGATG	1 cut(s)	220
BstFNI	CGCG	2 cut(s)	68, 198
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	2 cut(s)	37, 373
BstMAI	GTCTC	1 cut(s)	87
BstMBI	GATC	2 cut(s)	34, 370
BstNI	CCWGG	1 cut(s)	231
BstPI	GGTNACC	1 cut(s)	242
BstSCI	CCNGG	1 cut(s)	229
BstUI	CGCG	2 cut(s)	68, 198
BsuRI	GGCC	2 cut(s)	63, 83
BtsCI	GGATG	1 cut(s)	220
BtsIMutI	CAGTG	1 cut(s)	123
BtuMI	TCGCGA	1 cut(s)	198
Cac8I	GCNNGC	2 cut(s)	221, 310
CfoI	GCGC	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	61
CviJI	RGCY	2 cut(s)	63, 83
CviKI_1	RGCY	2 cut(s)	63, 83
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	2 cut(s)	36, 372
DpnII	GATC	2 cut(s)	34, 370
DrdI	GACNNNNNNGTC	1 cut(s)	125
DseDI	GACNNNNNNGTC	1 cut(s)	125
Eam1104I	CTCTTC	1 cut(s)	11
EarI	CTCTTC	1 cut(s)	11
Eco147I	AGGCCT	1 cut(s)	83
Eco91I	GGTNACC	1 cut(s)	242
EcoO65I	GGTNACC	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	229
FaiI	YATR	6 cut(s)	207, 335, 351, 375, 390, 403
FaqI	GGGAC	1 cut(s)	65
FokI	GGATG	1 cut(s)	227
GlaI	GCGC	1 cut(s)	69
HaeIII	GGCC	2 cut(s)	63, 83
HhaI	GCGC	1 cut(s)	70
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	3 cut(s)	53, 101, 107
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	4 cut(s)	46, 58, 106, 115
Hpy188III	TCNNGA	1 cut(s)	197
Hpy8I	GTNNAC	1 cut(s)	190
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	2 cut(s)	41, 144
HpyCH4III	ACNGT	2 cut(s)	127, 339
HpyCH4V	TGCA	1 cut(s)	312
HpyF3I	CTNAG	1 cut(s)	57
HspAI	GCGC	1 cut(s)	68
Kzo9I	GATC	2 cut(s)	34, 370
LpnPI	CCDG	4 cut(s)	154, 216, 243, 312
LweI	GCATC	1 cut(s)	50
MaeIII	GTNAC	1 cut(s)	242
MalI	GATC	2 cut(s)	36, 372
MboI	GATC	2 cut(s)	34, 370
MboII	GAAGA	1 cut(s)	28
MluCI	AATT	3 cut(s)	288, 313, 384
MlyI	GAGTC	3 cut(s)	47, 95, 101
MmeI	TCCRAC	2 cut(s)	129, 138
MnlI	CCTC	6 cut(s)	5, 22, 52, 94, 121, 156
MseI	TTAA	1 cut(s)	257
MspR9I	CCNGG	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	231
MvnI	CGCG	2 cut(s)	68, 198
NdeII	GATC	2 cut(s)	34, 370
NruI	TCGCGA	1 cut(s)	198
PceI	AGGCCT	1 cut(s)	83
PleI	GAGTC	3 cut(s)	47, 95, 101
PpsI	GAGTC	3 cut(s)	47, 95, 101
PsiI	TTATAA	1 cut(s)	403
Psp6I	CCWGG	1 cut(s)	229
PspEI	GGTNACC	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	229
PspPI	GGNCC	1 cut(s)	61
RruI	TCGCGA	1 cut(s)	198
SaqAI	TTAA	1 cut(s)	257
Sau3AI	GATC	2 cut(s)	34, 370
Sau96I	GGNCC	1 cut(s)	61
SchI	GAGTC	3 cut(s)	47, 95, 101
ScrFI	CCNGG	1 cut(s)	231
SetI	ASST	3 cut(s)	183, 249, 359
SfaNI	GCATC	1 cut(s)	50
Sse9I	AATT	3 cut(s)	288, 313, 384
SseBI	AGGCCT	1 cut(s)	83
StuI	AGGCCT	1 cut(s)	83
StyD4I	CCNGG	1 cut(s)	229
TaaI	ACNGT	2 cut(s)	127, 339
TaqI	TCGA	2 cut(s)	284, 369
TasI	AATT	3 cut(s)	288, 313, 384
Tru1I	TTAA	1 cut(s)	257
Tru9I	TTAA	1 cut(s)	257
TscAI	CASTG	1 cut(s)	130
TspGWI	ACGGA	1 cut(s)	113
TspRI	CASTG	1 cut(s)	130
XapI	RAATTY	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.