Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006811

Physical Location & Seq

Genomic Coordinates Reverse (-)

24303949 .. 24494294

Gene Structure 190346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0239400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3324 bp

ATGGAGAGACTTACTTGGTTCTTCCTGGTATACTTATTATGTTGTACAACGGTTAGCTTCTTAACTATGGCAGCACGAACCAACCTTAACATCACCACAGACCGATCTGCTCTTCTTGCTCTCAAAGCCCATATCATCAGTGACCCTCAAAACAAGATCTTTACCAATTGGTCAACCACTACCCCTGTTTGCAACTGGGTTGGTGTCATTTGTGGTGCACGTCATCATCGAGTCGCAGAGTTGAACCTCTCTTACTTTGGTCTCGCGGGCACCATTCCTCCTGAGCTAGGCAACTTATCATTGCTTGTTGATCTGGATGTCCAAAATAACAGTTTCCAGGGTACTTTGCCTAAGGAATTAGCTCGCCTGCGTCGGTTGAAGTTTATTAACTTGGGATACAACAAGTTTATGGGAGTGATTCCGTCATGGTTTGGGTCCTTGTCCAAACTTCAAGGTTTCAGGTTGTTTGGTAATCAATTTTCAGGTTCCATACCAGCTACCATCTTCAACTTATCTGCTTTGCAAGTAATTGATCTGGATTATAACCAACTCTCAGGTAAAATCCCTAGAGAAATTAGCAACCTAACAACATTGAAGGCGATCAACCTTGATCACAATAATTTTAAAGAAATTCCAAATGAAATCGGCACCTTGAATCAGCTAGAAAAGTTGTTTGTGCAAAAAAATGCCTTAAAAGGGCCTATTCCTATGGGTGTCTTCAATATGTCATCTTTGACTAGAGTAACTTTCTACGGAAATAAGTTGAATGGTAGAATTCCCGACAATATATGTCAACATCTTCCAAATATCCAAGAGTTGAATTTGGGTATCAATCAGTTTGATGGTCCACTTCCATCTAAGTTATGGCAATGCAAACAACTTCTTAATTTGACATTGCGGGATAACGGGTTTAGTGGAAGCATACCCAAAGATATTGGGAACTTAACTCGGATAAAGAGGATTGGGCTTGGCACCAACAGCTTGATAGGTACTATACCATATGAGTTTGGTTATCTTCCAAATTTAGAGCGGTTGTGGCTCCATGAGAATAATCTAAATGGCCATATCCCATCCTCAATCTTCAATATCTCCACAATAGCAAGATTAGCTCTCAACTTCAATCAGCTTTCAGGAAGCCTCCCAGCAAACGTAGGCCTTGGGCTTCCAAACCTAGAAGGGTTTGCAGTAGCAGCGAATCACCTCAGTGGAGTAATCCCCAAATTCATCTCCATTGCTTCTGAGCTTCGAGGTCTAGAACTGGGAGGTAACTCTTTTTCTGGATTTATTCCAAGCACTCTGTGCCTCTTGACAAACCTTGAATGGCTCGGATTGTCCAAGAATAATTTGACCATTGATACCTCTACTCCAGAAGTTAATATTTTGTCTTGTCTGCCAAATCTTAGAAATTTGAGGGTTTTATCCTTCGAAAGCAATCCATTAAATGCGAAGCTTTCGATTTCCTTCAGTAATTTCTCTGCATCACTTCAAAGTCTTTATTTACGAAATTGCAGCTTGAGAGGTAACATCCCCAGTGATATTGGGAATTTGAGTAGCTTGATAATTTTAAGCCTGGGAGACAATCAATTGAGTTTGGGTATGTTTGATAACACATTGCAAGGATACATTCCAGATGAACTTTGTCAACTAGAACACTTAAGTGCTTTGCATTTGGGTGGGAATCAACTCTCTGGTTCTGTACCTTCCTGCTTGGGTAATCTAACAGCATCTCTAAGAAAACTATACTTAGATTCCAATTTGTTGAATTCCACAATCCCATCTTCCTTGTGGGGACTTACAGATATCTTGCAACTAGACTTGTCATCCAATTCTCTAATTGGACCTCTAGCAGGTGGTGTTGGTAATTTGAAAGTTGCTATATACATAAATGTATCATACAACCAATTATCTGGTAGTATACCAAGCAGCGTTGGGAGTTTATTGAATTTGGTCAATCTCTCCTTAGCACATAATAATCTAGAAGGCCTTATTCCTAGTTCCTTTGCTACCTGTTTAAGCTTAGAAGGATTGGATTTATCTCAGAACAGTCTCTCTGGAGTGATTCCAAAGTCTCTTGAAGCACTCTCATATCTCAAGTATCTGAATCTATCTTTCAACATACTCCAAGGAGAAATTCCAACCGGTGGTCCATTCAAAAACTTCTCTGCTGAATCATTTGTTTCAAACCGTGGACTTTGTGGTGCATCCCAATTCCAAGTTCCACCATGCAAAAGAAAAACTAGCATAGCTATCTTGAAGTATGTTATTCCGGGGATCTTGTCAGCAATGCTTCTAGCGACCTCCATGATTTGGTTGTTGATGTTGCGTAGAAAAAAGAATGTGAAAGCAGCAGCAAATTCTGTCTTCACGCCTCAAGATTTCTGGAGAAGAGTTTCATACCAAGAGCTCCTAAGTGCGACAGATGGATTCAATGAAAGCAACTTACTTGGTACTGGGGGTTTTGGCTCAGTATATAAAGGAACATTGTCAGATGGGATGGACATTGCGATAAAGGTTTTCAATTTGGAGTTGGAAGACGCATTTTCAAGTTTTCAGGTTGAATGTGAAATGCTAAGTAATGTTCATCACCGAAATCTTGTCAAAGTCATCAGTTGTTGCAGTCAAGTGGATTTCAAAGGTCTTGTATTGAATTATATGCCTAATGGGAGCCTTGAGAAGTGGTTGTATTCTCAGAATTCTTCTTTGAACATAATGCAGAGGTTGGATATAATGATAGATGTTGCATCGGCATTAGAGTACCTTCATCATGGTTATGAAGTACCTATTGTGCATTGTGATTTGAAGCCAAGCAACATCCTACTAGATGATGATATGGTTGCACATGTTGCTGATTTTGGTATTGCAAAACTTTTGGGTGGAGGAGATTCTATGACTCAAACCATGACCTTGGCCACAATTGGGTATATGGCTCCAGAGTATGGAATGGAAGGAATAGTGACCAGAAAAGGGGATGTGTATAGTTTTGGTATTGTAGTGATGGAAACATTCACAAGAAGGAAGCCAACCGATGAGATCTTCGTTGGCGACATGAGATTTAATCAATGGGTTACAAGTTTTCTAGATGCGGATGCAATAGCTGAAGTTGTGGATGCTACTTTACTTGGAACTGAGGAGGATCATGACTTCGTGAGCAAGAGGGAGTGCTTATCATCCATTATGAGATTAGCTATTGCTTGTTCAGCAGAATCACCGGAAGAGAGGATAAACATGCAGGAGGCTGTAGCCACGCTTAAAACAATCAAGATCAAGTTTTCAAACGATGCTGCTGCAGGAGGTGTGGTGTTGAACCGTCGTCCTGTTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060260 GO:0060261 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000142 GO:2000144 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC4

Protein Analysis

1107

Amino Acids

121.18

Weight (kDa)

6.44

Isoelectric Point (pI)

32.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	33 - 71	5.3e-10	Leucine rich repeat N-terminal domain
LRR_14	PF23598	82 - 181	8.7e-07	Leucine-rich repeat region
LRR_8	PF13855	164 - 208	9.3e-07	Leucine rich repeat
LRR_14	PF23598	170 - 274	2.1e-09	Leucine-rich repeat region
LRR_14	PF23598	454 - 605	5.6e-07	Leucine-rich repeat region
LRR_8	PF13855	648 - 705	1e-09	Leucine rich repeat
Pkinase	PF00069	810 - 1081	2.1e-41	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	813 - 1082	2.2e-43	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09240 AT5G09240 AT5G09240 AT5G09250 AT5G09250 AT5G09250 AT5G09250 AT5G09250
fragaria_vesca	FvH4_1g24880 FvH4_1g24880 FvH4_1g24880
malus_domestica	MD01G1006400.v1.1 MD15G1135200.v1.1
prunus_persica	Prupe.4G275800_v2.0.a1 Prupe.4G275800_v2.0.a1
pyrus_communis	pycom01g00780 pycom15g12190
rosa_chinensis	RchiOBHm_Chr2g0122541
rosa_laevigata	RLG00000018683
rosa_multiflora	Rmu_sc0003832.1_g000005 Rmu_sc0006704.1_g000005
rosa_roxburghii	Rroxscaffold_2G00121490
rosa_rugosa	Rorug02G0239400
rosa_samantha	Rh2BG306800 Rh2CG284900
rosa_wichuraiana	Rw2G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	543
AarI	CACCTGC	1 cut(s)	1838
Acc36I	ACCTGC	1 cut(s)	1838
AccB1I	GGYRCC	3 cut(s)	269, 647, 971
AccB7I	CCANNNNNTGG	3 cut(s)	2141, 2307, 2936
AccBSI	CCGCTC	1 cut(s)	1030
AccI	GTMKAC	2 cut(s)	30, 1915
AccII	CGCG	1 cut(s)	266
AciI	CCGC	4 cut(s)	266, 898, 1030, 3083
AclWI	GGATC	2 cut(s)	2279, 3141
AcoI	YGGCCR	2 cut(s)	1060, 2907
AcuI	CTGAAG	2 cut(s)	1447, 3117
AdeI	CACNNNGTG	1 cut(s)	1299
AfaI	GTAC	7 cut(s)	46, 343, 991, 1698, 2449, 2756, 2778
AfiI	CCNNNNNNNGG	8 cut(s)	287, 696, 1847, 2141, 2307, 2916, 2936, 2964
AflII	CTTAAG	1 cut(s)	1654
AflIII	ACRYGT	1 cut(s)	2839
AgeI	ACCGGT	1 cut(s)	2138
AjiI	CACGTC	1 cut(s)	221
AjnI	CCWGG	3 cut(s)	24, 336, 1569
AjuI	GAANNNNNNNTTGG	4 cut(s)	2115, 2147, 2199, 2231
AleI	CACNNNNGTG	2 cut(s)	1203, 1656
Alw21I	GWGCWC	2 cut(s)	220, 2406
Alw26I	GTCTC	4 cut(s)	266, 1569, 2051, 2073
Alw44I	GTGCAC	1 cut(s)	216
AlwI	GGATC	2 cut(s)	2279, 3141
AoxI	GGCC	5 cut(s)	698, 1060, 1153, 1981, 2907
ApaLI	GTGCAC	1 cut(s)	216
ApeKI	GCWGC	8 cut(s)	71, 1190, 1509, 1923, 2345, 2348, 3281, 3284
AsiGI	ACCGGT	1 cut(s)	2138
Asp700I	GAANNNNTTC	1 cut(s)	2389
AspS9I	GGNCC	5 cut(s)	435, 698, 845, 1838, 2144
AsuC2I	CCSGG	1 cut(s)	2268
AsuHPI	GGTGA	4 cut(s)	85, 1190, 2576, 3198
AsuII	TTCGAA	1 cut(s)	1425
AvaII	GGWCC	4 cut(s)	435, 845, 1838, 2144
AxyI	CCTNAGG	1 cut(s)	351
BaeGI	GKGCMC	2 cut(s)	220, 272
BalI	TGGCCA	2 cut(s)	1062, 2909
BanI	GGYRCC	3 cut(s)	269, 647, 971
BanII	GRGCYC	1 cut(s)	2406
BbsI	GAAGAC	3 cut(s)	709, 2353, 2538
Bbv12I	GWGCWC	2 cut(s)	220, 2406
BbvI	GCAGC	8 cut(s)	83, 1202, 1521, 1935, 2357, 2360, 3268, 3271
BccI	CCATC	9 cut(s)	509, 836, 862, 1078, 1783, 2414, 2483, 2488, 2989
BcgI	CGANNNNNNTGC	2 cut(s)	3266, 3300
BciT130I	CCWGG	3 cut(s)	26, 338, 1571
BciVI	GTATCC	2 cut(s)	389, 1613
BclI	TGATCA	1 cut(s)	610
BcnI	CCSGG	1 cut(s)	2268
BcoDI	GTCTC	4 cut(s)	266, 1569, 2051, 2073
BfmI	CTRYAG	2 cut(s)	3237, 3285
BfrI	CTTAAG	1 cut(s)	1654
BfuAI	ACCTGC	1 cut(s)	1838
BfuI	GTATCC	2 cut(s)	389, 1613
BglII	AGATCT	2 cut(s)	156, 3030
BisI	GCNGC	8 cut(s)	72, 1191, 1510, 1924, 2346, 2349, 3282, 3285
BlsI	GCNGC	8 cut(s)	73, 1192, 1511, 1925, 2347, 2350, 3283, 3286
Bme1390I	CCNGG	4 cut(s)	26, 338, 1571, 2268
Bme18I	GGWCC	4 cut(s)	435, 845, 1838, 2144
BmgBI	CACGTC	1 cut(s)	221
BmgT120I	GGNCC	5 cut(s)	435, 698, 845, 1838, 2144
BmiI	GGNNCC	8 cut(s)	271, 436, 487, 649, 973, 1040, 2666, 2928
BmrFI	CCNGG	4 cut(s)	26, 338, 1571, 2268
BmrI	ACTGGG	4 cut(s)	205, 1268, 1524, 2460
BmsI	GCATC	8 cut(s)	1487, 1733, 2210, 2750, 3070, 3076, 3097, 3268
BmuI	ACTGGG	4 cut(s)	205, 1268, 1524, 2460
BpiI	GAAGAC	3 cut(s)	709, 2353, 2538
BpmI	CTGGAG	4 cut(s)	1350, 2073, 2401, 2913
Bpu10I	CCTNAGC	2 cut(s)	282, 1960
Bpu14I	TTCGAA	1 cut(s)	1425
BpuEI	CTTGAG	4 cut(s)	1534, 2075, 2355, 2690
BpuMI	CCSGG	1 cut(s)	2268
BsaI	GGTCTC	1 cut(s)	266
BsaJI	CCNNGG	7 cut(s)	337, 1156, 1570, 2122, 2185, 2267, 2904
BsaWI	WCCGGW	2 cut(s)	2138, 3208
BsaXI	ACNNNNNCTCC	6 cut(s)	262, 292, 1348, 1378, 3282, 3312
Bsc4I	CCNNNNNNNGG	8 cut(s)	287, 696, 1847, 2141, 2307, 2916, 2936, 2964
Bse118I	RCCGGY	1 cut(s)	2138
Bse1I	ACTGG	4 cut(s)	200, 1263, 1530, 2455
Bse21I	CCTNAGG	1 cut(s)	351
Bse3DI	GCAATG	7 cut(s)	299, 875, 893, 1230, 1610, 2289, 2499
BseBI	CCWGG	3 cut(s)	26, 338, 1571
BseDI	CCNNGG	7 cut(s)	337, 1156, 1570, 2122, 2185, 2267, 2904
BseLI	CCNNNNNNNGG	8 cut(s)	287, 696, 1847, 2141, 2307, 2916, 2936, 2964
BseMI	GCAATG	7 cut(s)	299, 875, 893, 1230, 1610, 2289, 2499
BseMII	CTCAG	8 cut(s)	273, 567, 1216, 1230, 2051, 2478, 2702, 3117
BseNI	ACTGG	4 cut(s)	200, 1263, 1530, 2455
BseRI	GAGGAG	2 cut(s)	2892, 3143
BseSI	GKGCMC	2 cut(s)	220, 272
BseXI	GCAGC	8 cut(s)	83, 1202, 1521, 1935, 2357, 2360, 3268, 3271
BseYI	CCCAGC	1 cut(s)	1141
Bsh1236I	CGCG	1 cut(s)	266
BshFI	GGCC	5 cut(s)	700, 1062, 1155, 1983, 2909
BshNI	GGYRCC	3 cut(s)	269, 647, 971
BshTI	ACCGGT	1 cut(s)	2138
BsiHKAI	GWGCWC	2 cut(s)	220, 2406
BsiSI	CCGG	3 cut(s)	2139, 2267, 3209
BslFI	GGGAC	1 cut(s)	1803
BslI	CCNNNNNNNGG	8 cut(s)	287, 696, 1847, 2141, 2307, 2916, 2936, 2964
BsmAI	GTCTC	4 cut(s)	266, 1569, 2051, 2073
BsmFI	GGGAC	1 cut(s)	1803
BsnI	GGCC	5 cut(s)	700, 1062, 1155, 1983, 2909
Bso31I	GGTCTC	1 cut(s)	266
Bsp119I	TTCGAA	1 cut(s)	1425
Bsp1286I	GDGCHC	3 cut(s)	220, 272, 2406
Bsp1407I	TGTACA	1 cut(s)	44
BspACI	CCGC	4 cut(s)	266, 898, 1030, 3083
BspANI	GGCC	5 cut(s)	700, 1062, 1155, 1983, 2909
BspCNI	CTCAG	8 cut(s)	274, 566, 1215, 1231, 2050, 2477, 2701, 3118
BspFNI	CGCG	1 cut(s)	266
BspHI	TCATGA	1 cut(s)	3136
BspLI	GGNNCC	8 cut(s)	271, 436, 487, 649, 973, 1040, 2666, 2928
BspMAI	CTGCAG	1 cut(s)	3289
BspMI	ACCTGC	1 cut(s)	1838
BspPI	GGATC	2 cut(s)	2279, 3141
BspQI	GCTCTTC	1 cut(s)	117
BspT104I	TTCGAA	1 cut(s)	1425
BspT107I	GGYRCC	3 cut(s)	269, 647, 971
BspTI	CTTAAG	1 cut(s)	1654
BspTNI	GGTCTC	1 cut(s)	266
BsrBI	CCGCTC	1 cut(s)	1030
BsrDI	GCAATG	7 cut(s)	299, 875, 893, 1230, 1610, 2289, 2499
BsrFI	RCCGGY	1 cut(s)	2138
BsrGI	TGTACA	1 cut(s)	44
BsrI	ACTGG	4 cut(s)	200, 1263, 1530, 2455
BssAI	RCCGGY	1 cut(s)	2138
BssECI	CCNNGG	7 cut(s)	337, 1156, 1570, 2122, 2185, 2267, 2904
BssNAI	GTATAC	2 cut(s)	31, 1916
BssT1I	CCWWGG	3 cut(s)	1156, 2122, 2904
Bst1107I	GTATAC	2 cut(s)	31, 1916
Bst2UI	CCWGG	3 cut(s)	26, 338, 1571
Bst4CI	ACNGT	5 cut(s)	52, 332, 2045, 2186, 3308
Bst6I	CTCTTC	3 cut(s)	117, 2380, 3207
BstAFI	CTTAAG	1 cut(s)	1654
BstAPI	GCANNNNNTGC	2 cut(s)	1299, 2843
BstAUI	TGTACA	1 cut(s)	44
BstBI	TTCGAA	1 cut(s)	1425
BstC8I	GCNNGC	3 cut(s)	268, 364, 368
BstDSI	CCRYGG	1 cut(s)	2185
BstENI	CCTNNNNNAGG	2 cut(s)	285, 1845
BstFNI	CGCG	1 cut(s)	266
BstMAI	GTCTC	4 cut(s)	266, 1569, 2051, 2073
BstMWI	GCNNNNNNNGC	9 cut(s)	116, 125, 978, 1036, 1106, 1190, 1299, 2843, 3197
BstNI	CCWGG	3 cut(s)	26, 338, 1571
BstNSI	RCATGY	2 cut(s)	2843, 3229
BstSCI	CCNGG	4 cut(s)	24, 336, 1569, 2266
BstSFI	CTRYAG	2 cut(s)	3237, 3285
BstSLI	GKGCMC	2 cut(s)	220, 272
BstUI	CGCG	1 cut(s)	266
BstV1I	GCAGC	8 cut(s)	83, 1202, 1521, 1935, 2357, 2360, 3268, 3271
BstV2I	GAAGAC	3 cut(s)	709, 2353, 2538
BstX2I	RGATCY	3 cut(s)	156, 2271, 3030
BstXI	CCANNNNNNTGG	2 cut(s)	1907, 2905
BstYI	RGATCY	3 cut(s)	156, 2271, 3030
BstZ17I	GTATAC	2 cut(s)	31, 1916
Bsu36I	CCTNAGG	1 cut(s)	351
BsuI	GTATCC	2 cut(s)	389, 1613
BsuRI	GGCC	5 cut(s)	700, 1062, 1155, 1983, 2909
BtgI	CCRYGG	1 cut(s)	2185
BtrI	CACGTC	1 cut(s)	221
BtsIMutI	CAGTG	3 cut(s)	145, 1210, 1537
BveI	ACCTGC	1 cut(s)	1838
Cac8I	GCNNGC	3 cut(s)	268, 364, 368
CciI	TCATGA	1 cut(s)	3136
Cfr10I	RCCGGY	1 cut(s)	2138
Cfr13I	GGNCC	5 cut(s)	435, 698, 845, 1838, 2144
CseI	GACGC	2 cut(s)	359, 2543
Csp6I	GTAC	7 cut(s)	45, 342, 990, 1697, 2448, 2755, 2777
CspAI	ACCGGT	1 cut(s)	2138
CviQI	GTAC	7 cut(s)	45, 342, 990, 1697, 2448, 2755, 2777
DraI	TTTAAA	1 cut(s)	625
DraIII	CACNNNGTG	1 cut(s)	1299
EaeI	YGGCCR	2 cut(s)	1060, 2907
Eam1104I	CTCTTC	3 cut(s)	117, 2380, 3207
EarI	CTCTTC	3 cut(s)	117, 2380, 3207
Ecl136II	GAGCTC	1 cut(s)	2404
Eco130I	CCWWGG	3 cut(s)	1156, 2122, 2904
Eco147I	AGGCCT	2 cut(s)	1155, 1983
Eco24I	GRGCYC	1 cut(s)	2406
Eco31I	GGTCTC	1 cut(s)	266
Eco32I	GATATC	1 cut(s)	1801
Eco47I	GGWCC	4 cut(s)	435, 845, 1838, 2144
Eco53kI	GAGCTC	1 cut(s)	2404
Eco57I	CTGAAG	2 cut(s)	1447, 3117
Eco81I	CCTNAGG	1 cut(s)	351
EcoICRI	GAGCTC	1 cut(s)	2404
EcoNI	CCTNNNNNAGG	2 cut(s)	285, 1845
EcoO109I	RGGNCCY	2 cut(s)	435, 698
EcoRI	GAATTC	3 cut(s)	774, 1762, 2692
EcoRII	CCWGG	3 cut(s)	24, 336, 1569
EcoRV	GATATC	1 cut(s)	1801
EcoT14I	CCWWGG	3 cut(s)	1156, 2122, 2904
EcoT38I	GRGCYC	1 cut(s)	2406
ErhI	CCWWGG	3 cut(s)	1156, 2122, 2904
FaqI	GGGAC	1 cut(s)	1803
FauI	CCCGC	2 cut(s)	259, 891
FauNDI	CATATG	1 cut(s)	1000
FbaI	TGATCA	1 cut(s)	610
FblI	GTMKAC	2 cut(s)	30, 1915
Fnu4HI	GCNGC	8 cut(s)	72, 1191, 1510, 1924, 2346, 2349, 3282, 3285
FriOI	GRGCYC	1 cut(s)	2406
Fsp4HI	GCNGC	8 cut(s)	72, 1191, 1510, 1924, 2346, 2349, 3282, 3285
GluI	GCNGC	8 cut(s)	72, 1191, 1510, 1924, 2346, 2349, 3282, 3285
GsaI	CCCAGC	1 cut(s)	1145
GsuI	CTGGAG	4 cut(s)	1350, 2073, 2401, 2913
HaeIII	GGCC	5 cut(s)	700, 1062, 1155, 1983, 2909
HapII	CCGG	3 cut(s)	2139, 2267, 3209
HgaI	GACGC	2 cut(s)	359, 2543
HincII	GTYRAC	3 cut(s)	174, 794, 1643
HindII	GTYRAC	3 cut(s)	174, 794, 1643
HindIII	AAGCTT	2 cut(s)	1448, 2014
HpaII	CCGG	3 cut(s)	2139, 2267, 3209
HphI	GGTGA	4 cut(s)	85, 1190, 2576, 3198
Hpy166II	GTNNAC	8 cut(s)	31, 174, 218, 794, 848, 1643, 1916, 2189
Hpy188I	TCNGA	7 cut(s)	951, 1240, 1328, 2040, 2100, 2488, 2691
Hpy8I	GTNNAC	8 cut(s)	31, 174, 218, 794, 848, 1643, 1916, 2189
Hpy99I	CGWCG	2 cut(s)	375, 3312
HpyCH4III	ACNGT	5 cut(s)	52, 332, 2045, 2186, 3308
HpyCH4IV	ACGT	2 cut(s)	220, 1149
HpyF10VI	GCNNNNNNNGC	9 cut(s)	116, 125, 978, 1036, 1106, 1190, 1299, 2843, 3197
HpySE526I	ACGT	2 cut(s)	220, 1149
Ksp22I	TGATCA	1 cut(s)	610
LguI	GCTCTTC	1 cut(s)	117
LmnI	GCTCC	4 cut(s)	1044, 2409, 2664, 2932
Lsp1109I	GCAGC	8 cut(s)	83, 1202, 1521, 1935, 2357, 2360, 3268, 3271
LweI	GCATC	8 cut(s)	1487, 1733, 2210, 2750, 3070, 3076, 3097, 3268
MaeII	ACGT	2 cut(s)	220, 1149
MaeIII	GTNAC	6 cut(s)	140, 742, 1265, 1520, 2953, 3064
MbiI	CCGCTC	1 cut(s)	1030
MfeI	CAATTG	3 cut(s)	166, 1583, 2913
MflI	RGATCY	3 cut(s)	156, 2271, 3030
MhlI	GDGCHC	3 cut(s)	220, 272, 2406
MlsI	TGGCCA	2 cut(s)	1062, 2909
MluNI	TGGCCA	2 cut(s)	1062, 2909
MlyI	GAGTC	2 cut(s)	240, 2884
MmeI	TCCRAC	3 cut(s)	2159, 2508, 2700
Mox20I	TGGCCA	2 cut(s)	1062, 2909
MroXI	GAANNNNTTC	1 cut(s)	2389
MscI	TGGCCA	2 cut(s)	1062, 2909
MslI	CAYNNNNRTG	4 cut(s)	1203, 1656, 1671, 2769
Msp20I	TGGCCA	2 cut(s)	1062, 2909
MspCI	CTTAAG	1 cut(s)	1654
MspI	CCGG	3 cut(s)	2139, 2267, 3209
MspR9I	CCNGG	4 cut(s)	26, 338, 1571, 2268
MunI	CAATTG	3 cut(s)	166, 1583, 2913
MvaI	CCWGG	3 cut(s)	26, 338, 1571
MvnI	CGCG	1 cut(s)	266
MwoI	GCNNNNNNNGC	9 cut(s)	116, 125, 978, 1036, 1106, 1190, 1299, 2843, 3197
NciI	CCSGG	1 cut(s)	2268
NdeI	CATATG	1 cut(s)	1000
NlaIV	GGNNCC	8 cut(s)	271, 436, 487, 649, 973, 1040, 2666, 2928
NmuCI	GTSAC	2 cut(s)	140, 2953
NspI	RCATGY	2 cut(s)	2843, 3229
NspV	TTCGAA	1 cut(s)	1425
OliI	CACNNNNGTG	2 cut(s)	1203, 1656
PagI	TCATGA	1 cut(s)	3136
PaqCI	CACCTGC	1 cut(s)	1838
PceI	AGGCCT	2 cut(s)	1155, 1983
PciI	ACATGT	1 cut(s)	2839
PciSI	GCTCTTC	1 cut(s)	117
PcsI	WCGNNNNNNNCGW	1 cut(s)	226
PdmI	GAANNNNTTC	1 cut(s)	2389
PflMI	CCANNNNNTGG	3 cut(s)	2141, 2307, 2936
PinAI	ACCGGT	1 cut(s)	2138
PkrI	GCNGC	8 cut(s)	73, 1192, 1511, 1925, 2347, 2350, 3283, 3286
PleI	GAGTC	2 cut(s)	239, 2884
PpsI	GAGTC	2 cut(s)	239, 2884
PpuMI	RGGWCCY	1 cut(s)	435
PscI	ACATGT	1 cut(s)	2839
PsiI	TTATAA	1 cut(s)	543
Psp124BI	GAGCTC	1 cut(s)	2406
Psp5II	RGGWCCY	1 cut(s)	435
Psp6I	CCWGG	3 cut(s)	24, 336, 1569
PspFI	CCCAGC	1 cut(s)	1141
PspGI	CCWGG	3 cut(s)	24, 336, 1569
PspN4I	GGNNCC	8 cut(s)	271, 436, 487, 649, 973, 1040, 2666, 2928
PspPI	GGNCC	5 cut(s)	435, 698, 845, 1838, 2144
PspPPI	RGGWCCY	1 cut(s)	435
PsrI	GAACNNNNNNTAC	2 cut(s)	236, 268
PstI	CTGCAG	1 cut(s)	3289
PsuI	RGATCY	3 cut(s)	156, 2271, 3030
RsaI	GTAC	7 cut(s)	46, 343, 991, 1698, 2449, 2756, 2778
RsaNI	GTAC	7 cut(s)	45, 342, 990, 1697, 2448, 2755, 2777
RseI	CAYNNNNRTG	4 cut(s)	1203, 1656, 1671, 2769
SacI	GAGCTC	1 cut(s)	2406
SapI	GCTCTTC	1 cut(s)	117
SatI	GCNGC	8 cut(s)	72, 1191, 1510, 1924, 2346, 2349, 3282, 3285
Sau96I	GGNCC	5 cut(s)	435, 698, 845, 1838, 2144
SchI	GAGTC	2 cut(s)	240, 2884
ScrFI	CCNGG	4 cut(s)	26, 338, 1571, 2268
SduI	GDGCHC	3 cut(s)	220, 272, 2406
SfaNI	GCATC	8 cut(s)	1487, 1733, 2210, 2750, 3070, 3076, 3097, 3268
SfcI	CTRYAG	2 cut(s)	3237, 3285
SfuI	TTCGAA	1 cut(s)	1425
SinI	GGWCC	4 cut(s)	435, 845, 1838, 2144
SmiMI	CAYNNNNRTG	4 cut(s)	1203, 1656, 1671, 2769
SmlI	CTYRAG	5 cut(s)	1513, 1654, 2090, 2370, 2669
SmoI	CTYRAG	5 cut(s)	1513, 1654, 2090, 2370, 2669
SseBI	AGGCCT	2 cut(s)	1155, 1983
SsiI	CCGC	4 cut(s)	266, 898, 1030, 3083
SspI	AATATT	1 cut(s)	1378
SstI	GAGCTC	1 cut(s)	2406
StuI	AGGCCT	2 cut(s)	1155, 1983
StyD4I	CCNGG	4 cut(s)	24, 336, 1569, 2266
StyI	CCWWGG	3 cut(s)	1156, 2122, 2904
TaaI	ACNGT	5 cut(s)	52, 332, 2045, 2186, 3308
TaiI	ACGT	2 cut(s)	223, 1152
TaqI	TCGA	4 cut(s)	229, 1246, 1425, 1454
TaqII	GACCGA	1 cut(s)	117
TatI	WGTACW	1 cut(s)	44
TscAI	CASTG	3 cut(s)	145, 1210, 1537
TseFI	GTSAC	2 cut(s)	140, 2953
TseI	GCWGC	8 cut(s)	71, 1190, 1509, 1923, 2345, 2348, 3281, 3284
Tsp45I	GTSAC	2 cut(s)	140, 2953
TspDTI	ATGAA	8 cut(s)	654, 1213, 1647, 2382, 2445, 2570, 2750, 2787
TspGWI	ACGGA	2 cut(s)	411, 768
TspRI	CASTG	3 cut(s)	145, 1210, 1537
Van91I	CCANNNNNTGG	3 cut(s)	2141, 2307, 2936
Vha464I	CTTAAG	1 cut(s)	1654
VneI	GTGCAC	1 cut(s)	216
VpaK11BI	GGWCC	4 cut(s)	435, 845, 1838, 2144
XagI	CCTNNNNNAGG	2 cut(s)	285, 1845
XbaI	TCTAGA	3 cut(s)	1252, 1975, 3076
XceI	RCATGY	2 cut(s)	2843, 3229
XcmI	CCANNNNNNNNNTGG	2 cut(s)	861, 1782
XmiI	GTMKAC	2 cut(s)	30, 1915
XmnI	GAANNNNTTC	1 cut(s)	2389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.