Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006811

Physical Location & Seq

Genomic Coordinates Reverse (-)

2875136 .. 2876609

Gene Structure 1474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G09250.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGTCTTCTAGAGGAAAAAGGAAAGACGAAGATGTCAGAGCATCAGATGACGAATCTGAAACCCACGCGCCGGCTAAGAAAGTCGCAAAGCCAGCAGACGATTCCGACCAGTCTGACGATATCGTCGTCTGCAACATATCTAAGAATAGGAGAGTCTCTGTAAGGAATTGGAACGGGAAGATTTGGATTGACATTCGTGAGTTCTATGTCAAGGACGGAAAGACTTTGCCTGGCAAGAAAGGTATCTCTCTAAGCGTGGATCAGTGGAACACTCTTCGGAACCACGCAGAGGATATCGAGAAGGCCCTCTCTGACCTTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060260 GO:0060261 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000142 GO:2000144 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC4

Protein Analysis

107

Amino Acids

12.08

Weight (kDa)

6.73

Isoelectric Point (pI)

49.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC4	PF02229	44 - 89	3.8e-23	Transcriptional Coactivator p15 (PC4)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09240 AT5G09240 AT5G09240 AT5G09250 AT5G09250 AT5G09250 AT5G09250 AT5G09250
fragaria_vesca	FvH4_1g24880 FvH4_1g24880 FvH4_1g24880
malus_domestica	MD01G1006400.v1.1 MD15G1135200.v1.1
prunus_persica	Prupe.4G275800_v2.0.a1 Prupe.4G275800_v2.0.a1
pyrus_communis	pycom01g00780 pycom15g12190
rosa_chinensis	RchiOBHm_Chr2g0122541
rosa_laevigata	RLG00000018683
rosa_multiflora	Rmu_sc0003832.1_g000005 Rmu_sc0006704.1_g000005
rosa_roxburghii	Rroxscaffold_2G00121490
rosa_rugosa	Rorug02G0239400
rosa_samantha	Rh2BG306800 Rh2CG284900
rosa_wichuraiana	Rw2G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	32, 122
AccII	CGCG	1 cut(s)	68
AclWI	GGATC	1 cut(s)	267
AfiI	CCNNNNNNNGG	2 cut(s)	70, 289
AjnI	CCWGG	1 cut(s)	229
Alw26I	GTCTC	1 cut(s)	160
AlwI	GGATC	1 cut(s)	267
AoxI	GGCC	1 cut(s)	303
AspLEI	GCGC	1 cut(s)	70
AspS9I	GGNCC	1 cut(s)	304
BciT130I	CCWGG	1 cut(s)	231
BcoDI	GTCTC	1 cut(s)	160
BfaI	CTAG	1 cut(s)	9
Bme1390I	CCNGG	1 cut(s)	231
BmgT120I	GGNCC	1 cut(s)	304
BmiI	GGNNCC	1 cut(s)	281
BmrFI	CCNGG	1 cut(s)	231
BmsI	GCATC	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 289
Bse118I	RCCGGY	1 cut(s)	70
Bse1I	ACTGG	1 cut(s)	109
BseBI	CCWGG	1 cut(s)	231
BseLI	CCNNNNNNNGG	2 cut(s)	70, 289
BseNI	ACTGG	1 cut(s)	109
Bsh1236I	CGCG	1 cut(s)	68
BshFI	GGCC	1 cut(s)	305
BsiSI	CCGG	1 cut(s)	71
BslI	CCNNNNNNNGG	2 cut(s)	70, 289
BsmAI	GTCTC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	305
Bsp143I	GATC	1 cut(s)	259
BspANI	GGCC	1 cut(s)	305
BspFNI	CGCG	1 cut(s)	68
BspLI	GGNNCC	1 cut(s)	281
BspPI	GGATC	1 cut(s)	267
BsrFI	RCCGGY	1 cut(s)	70
BsrI	ACTGG	1 cut(s)	109
BssAI	RCCGGY	1 cut(s)	70
BssMI	GATC	1 cut(s)	259
Bst2UI	CCWGG	1 cut(s)	231
Bst6I	CTCTTC	1 cut(s)	279
BstC8I	GCNNGC	2 cut(s)	72, 93
BstDEI	CTNAG	4 cut(s)	75, 141, 251, 321
BstFNI	CGCG	1 cut(s)	68
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	1 cut(s)	262
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	1 cut(s)	259
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstNI	CCWGG	1 cut(s)	231
BstSCI	CCNGG	1 cut(s)	229
BstUI	CGCG	1 cut(s)	68
BsuRI	GGCC	1 cut(s)	305
BtsIMutI	CAGTG	1 cut(s)	269
Cac8I	GCNNGC	2 cut(s)	72, 93
CfoI	GCGC	1 cut(s)	70
Cfr10I	RCCGGY	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	304
CviJI	RGCY	3 cut(s)	74, 91, 305
CviKI_1	RGCY	3 cut(s)	74, 91, 305
DdeI	CTNAG	4 cut(s)	75, 141, 251, 321
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
DrdI	GACNNNNNNGTC	2 cut(s)	32, 122
DseDI	GACNNNNNNGTC	2 cut(s)	32, 122
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
Eco32I	GATATC	2 cut(s)	121, 295
EcoO109I	RGGNCCY	1 cut(s)	304
EcoRII	CCWGG	1 cut(s)	229
EcoRV	GATATC	2 cut(s)	121, 295
FaiI	YATR	2 cut(s)	137, 207
FspBI	CTAG	1 cut(s)	9
GlaI	GCGC	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	305
HapII	CCGG	1 cut(s)	71
HhaI	GCGC	1 cut(s)	70
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HinfI	GANTC	3 cut(s)	53, 101, 153
HpaII	CCGG	1 cut(s)	71
Hpy188I	TCNGA	7 cut(s)	38, 46, 58, 106, 115, 279, 313
Hpy188III	TCNNGA	3 cut(s)	9, 197, 298
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	1 cut(s)	295
HpyCH4V	TGCA	1 cut(s)	132
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	4 cut(s)	75, 141, 251, 321
HspAI	GCGC	1 cut(s)	68
KroI	GCCGGC	1 cut(s)	70
KroNI	GCCGGC	1 cut(s)	72
Kzo9I	GATC	1 cut(s)	259
LpnPI	CCDG	5 cut(s)	84, 105, 122, 216, 243
LweI	GCATC	1 cut(s)	50
MaeI	CTAG	1 cut(s)	9
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	3 cut(s)	41, 190, 266
MluCI	AATT	1 cut(s)	166
MlyI	GAGTC	1 cut(s)	162
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	3 cut(s)	5, 283, 317
MroNI	GCCGGC	1 cut(s)	70
MspI	CCGG	1 cut(s)	71
MspR9I	CCNGG	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	231
MvnI	CGCG	1 cut(s)	68
MwoI	GCNNNNNNNGC	1 cut(s)	92
NaeI	GCCGGC	1 cut(s)	72
NdeII	GATC	1 cut(s)	259
NgoMIV	GCCGGC	1 cut(s)	70
NlaIV	GGNNCC	1 cut(s)	281
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PdiI	GCCGGC	1 cut(s)	72
PfeI	GAWTC	2 cut(s)	53, 101
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
Psp6I	CCWGG	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	1 cut(s)	281
PspPI	GGNCC	1 cut(s)	304
Sau3AI	GATC	1 cut(s)	259
Sau96I	GGNCC	1 cut(s)	304
SchI	GAGTC	1 cut(s)	162
ScrFI	CCNGG	1 cut(s)	231
SetI	ASST	2 cut(s)	244, 318
SfaNI	GCATC	1 cut(s)	50
Sse9I	AATT	1 cut(s)	166
SspMI	CTAG	1 cut(s)	9
StyD4I	CCNGG	1 cut(s)	229
TaqI	TCGA	1 cut(s)	297
TasI	AATT	1 cut(s)	166
TfiI	GAWTC	2 cut(s)	53, 101
TscAI	CASTG	1 cut(s)	269
TspGWI	ACGGA	1 cut(s)	231
TspRI	CASTG	1 cut(s)	269
XbaI	TCTAGA	1 cut(s)	8
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.