Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0006811

Physical Location & Seq

Genomic Coordinates Forward (+)

23047665 .. 23050546

Gene Structure 2882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G275800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGTCGTGGAGAGGAAAGAGAAAGGACGAGGAGGATCACGCGTCAGATGGTGACTCTGAGGGCCACGCGCCCCCCAAGAAGACCTGCAAGAGAGACTCCGCCGATGACAACTCTGACGAAATCATTGCCTGCGAGATCTCCAAGAATAGGAGGGTAACTGTGAGGAACTGGAATGGAAAAATTATGGTCGACATTCGTGAGTTCTATGTTAAGGATGGCAAGCAAATGCCTGGGAAAAAAGGAATCTCACTAACGAAGGATCAGTGGGATGTGCTTCATAATCATGTGGAAGAAATTGACAAGGCTGTTAATGGGACCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060260 GO:0060261 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000142 GO:2000144 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC4

Protein Analysis

108

Amino Acids

12.18

Weight (kDa)

6.42

Isoelectric Point (pI)

50.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09240 AT5G09240 AT5G09240 AT5G09250 AT5G09250 AT5G09250 AT5G09250 AT5G09250
fragaria_vesca	FvH4_1g24880 FvH4_1g24880 FvH4_1g24880
malus_domestica	MD01G1006400.v1.1 MD15G1135200.v1.1
prunus_persica	Prupe.4G275800_v2.0.a1 Prupe.4G275800_v2.0.a1
pyrus_communis	pycom01g00780 pycom15g12190
rosa_chinensis	RchiOBHm_Chr2g0122541
rosa_laevigata	RLG00000018683
rosa_multiflora	Rmu_sc0003832.1_g000005 Rmu_sc0006704.1_g000005
rosa_roxburghii	Rroxscaffold_2G00121490
rosa_rugosa	Rorug02G0239400
rosa_samantha	Rh2BG306800 Rh2CG284900
rosa_wichuraiana	Rw2G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	92
AccI	GTMKAC	1 cut(s)	189
AccII	CGCG	2 cut(s)	41, 68
AciI	CCGC	1 cut(s)	99
AclWI	GGATC	2 cut(s)	42, 267
AfiI	CCNNNNNNNGG	1 cut(s)	147
AflIII	ACRYGT	1 cut(s)	39
AjnI	CCWGG	1 cut(s)	229
Alw26I	GTCTC	1 cut(s)	87
AlwI	GGATC	2 cut(s)	42, 267
AoxI	GGCC	1 cut(s)	61
AspLEI	GCGC	1 cut(s)	70
AspS9I	GGNCC	2 cut(s)	61, 315
AsuHPI	GGTGA	1 cut(s)	62
AvaII	GGWCC	1 cut(s)	315
BbsI	GAAGAC	1 cut(s)	86
BccI	CCATC	2 cut(s)	41, 209
BcgI	CGANNNNNNTGC	2 cut(s)	107, 141
BciT130I	CCWGG	1 cut(s)	231
BcoDI	GTCTC	1 cut(s)	87
BfuAI	ACCTGC	1 cut(s)	92
BglII	AGATCT	1 cut(s)	135
Bme1390I	CCNGG	1 cut(s)	231
Bme18I	GGWCC	1 cut(s)	315
BmgT120I	GGNCC	2 cut(s)	61, 315
BmiI	GGNNCC	1 cut(s)	316
BmrFI	CCNGG	1 cut(s)	231
BpiI	GAAGAC	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	230
Bsc4I	CCNNNNNNNGG	1 cut(s)	147
Bse1I	ACTGG	1 cut(s)	173
Bse3DI	GCAATG	1 cut(s)	123
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	1 cut(s)	230
BseGI	GGATG	2 cut(s)	220, 274
BseLI	CCNNNNNNNGG	1 cut(s)	147
BseMI	GCAATG	1 cut(s)	123
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	173
BseRI	GAGGAG	1 cut(s)	44
Bsh1236I	CGCG	2 cut(s)	41, 68
BshFI	GGCC	1 cut(s)	63
BslI	CCNNNNNNNGG	1 cut(s)	147
BsmAI	GTCTC	1 cut(s)	87
BsnI	GGCC	1 cut(s)	63
Bsp143I	GATC	3 cut(s)	34, 135, 259
BspACI	CCGC	1 cut(s)	99
BspANI	GGCC	1 cut(s)	63
BspCNI	CTCAG	1 cut(s)	49
BspFNI	CGCG	2 cut(s)	41, 68
BspLI	GGNNCC	1 cut(s)	316
BspMI	ACCTGC	1 cut(s)	92
BspPI	GGATC	2 cut(s)	42, 267
BsrDI	GCAATG	1 cut(s)	123
BsrI	ACTGG	1 cut(s)	173
BssECI	CCNNGG	1 cut(s)	230
BssMI	GATC	3 cut(s)	34, 135, 259
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	1 cut(s)	160
BstC8I	GCNNGC	2 cut(s)	130, 221
BstDEI	CTNAG	2 cut(s)	57, 321
BstF5I	GGATG	2 cut(s)	220, 274
BstFNI	CGCG	2 cut(s)	41, 68
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	3 cut(s)	37, 138, 262
BstMAI	GTCTC	1 cut(s)	87
BstMBI	GATC	3 cut(s)	34, 135, 259
BstNI	CCWGG	1 cut(s)	231
BstSCI	CCNGG	1 cut(s)	229
BstUI	CGCG	2 cut(s)	41, 68
BstV2I	GAAGAC	1 cut(s)	86
BstX2I	RGATCY	1 cut(s)	135
BstYI	RGATCY	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	63
BtsCI	GGATG	2 cut(s)	220, 274
BtsIMutI	CAGTG	1 cut(s)	269
BveI	ACCTGC	1 cut(s)	92
Cac8I	GCNNGC	2 cut(s)	130, 221
CfoI	GCGC	1 cut(s)	70
Cfr13I	GGNCC	2 cut(s)	61, 315
CseI	GACGC	1 cut(s)	30
CviAII	CATG	1 cut(s)	284
CviJI	RGCY	2 cut(s)	63, 305
CviKI_1	RGCY	2 cut(s)	63, 305
DdeI	CTNAG	2 cut(s)	57, 321
DpnI	GATC	3 cut(s)	36, 137, 261
DpnII	GATC	3 cut(s)	34, 135, 259
EciI	GGCGGA	1 cut(s)	88
Eco47I	GGWCC	1 cut(s)	315
EcoO109I	RGGNCCY	1 cut(s)	315
EcoRII	CCWGG	1 cut(s)	229
FaeI	CATG	1 cut(s)	287
FaiI	YATR	4 cut(s)	185, 207, 279, 285
FatI	CATG	1 cut(s)	283
FblI	GTMKAC	1 cut(s)	189
FokI	GGATG	2 cut(s)	227, 281
GlaI	GCGC	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	63
HgaI	GACGC	1 cut(s)	30
HhaI	GCGC	1 cut(s)	70
Hin1II	CATG	1 cut(s)	287
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	3 cut(s)	53, 95, 243
HphI	GGTGA	1 cut(s)	62
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	3 cut(s)	46, 58, 115
Hpy188III	TCNNGA	1 cut(s)	197
Hpy8I	GTNNAC	1 cut(s)	190
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4V	TGCA	1 cut(s)	87
HpyF3I	CTNAG	2 cut(s)	57, 321
Hsp92II	CATG	1 cut(s)	287
HspAI	GCGC	1 cut(s)	68
Kzo9I	GATC	3 cut(s)	34, 135, 259
LpnPI	CCDG	5 cut(s)	97, 142, 154, 216, 243
MaeIII	GTNAC	2 cut(s)	50, 154
MalI	GATC	3 cut(s)	36, 137, 261
MboI	GATC	3 cut(s)	34, 135, 259
MboII	GAAGA	2 cut(s)	91, 302
MflI	RGATCY	1 cut(s)	135
MluCI	AATT	2 cut(s)	180, 294
MluI	ACGCGT	1 cut(s)	39
MlyI	GAGTC	2 cut(s)	47, 89
MnlI	CCTC	6 cut(s)	5, 22, 25, 52, 144, 156
MseI	TTAA	2 cut(s)	210, 309
MslI	CAYNNNNRTG	1 cut(s)	282
MspR9I	CCNGG	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	231
MvnI	CGCG	2 cut(s)	41, 68
NdeII	GATC	3 cut(s)	34, 135, 259
NlaIII	CATG	1 cut(s)	287
NlaIV	GGNNCC	1 cut(s)	316
NmuCI	GTSAC	1 cut(s)	50
PfeI	GAWTC	1 cut(s)	243
PleI	GAGTC	2 cut(s)	47, 89
PpsI	GAGTC	2 cut(s)	47, 89
PpuMI	RGGWCCY	1 cut(s)	315
Psp5II	RGGWCCY	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	1 cut(s)	316
PspPI	GGNCC	2 cut(s)	61, 315
PspPPI	RGGWCCY	1 cut(s)	315
PsuI	RGATCY	1 cut(s)	135
RseI	CAYNNNNRTG	1 cut(s)	282
SalI	GTCGAC	1 cut(s)	188
SaqAI	TTAA	2 cut(s)	210, 309
Sau3AI	GATC	3 cut(s)	34, 135, 259
Sau96I	GGNCC	2 cut(s)	61, 315
SchI	GAGTC	2 cut(s)	47, 89
ScrFI	CCNGG	1 cut(s)	231
SetI	ASST	2 cut(s)	86, 320
SinI	GGWCC	1 cut(s)	315
SmiMI	CAYNNNNRTG	1 cut(s)	282
Sse9I	AATT	2 cut(s)	180, 294
SsiI	CCGC	1 cut(s)	99
StyD4I	CCNGG	1 cut(s)	229
TaaI	ACNGT	1 cut(s)	160
TaqI	TCGA	1 cut(s)	189
TasI	AATT	2 cut(s)	180, 294
TfiI	GAWTC	1 cut(s)	243
Tru1I	TTAA	2 cut(s)	210, 309
Tru9I	TTAA	2 cut(s)	210, 309
TscAI	CASTG	1 cut(s)	269
TseFI	GTSAC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	50
TspDTI	ATGAA	1 cut(s)	266
TspRI	CASTG	1 cut(s)	269
VpaK11BI	GGWCC	1 cut(s)	315
XmiI	GTMKAC	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.