Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0006811

Physical Location & Seq

Genomic Coordinates Reverse (-)

2834847 .. 2837452

Gene Structure 2606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1006400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGTCGTGGAGAGGGAAGAGAAAAGATGAGGACGATCACGCGTCGGGAGGGGACTCTGAGGGCCACGCGCCACCCAAAAAGGCCTCCAAGAGAGACACAGACTCCGACTCCTCCGACGACATCACTGTCTGCGAGATTTCCAAGAATAGAAGGGTAAGCGTGAGGAACTGGAATGGCAAGGTTGTGGTCGACATTCGCGAGTTCTATGTCAAGGATGGCAAGCAAATGCCTGGAAAAAAGGGAATCTCGCTGACAATGGATCAGTGGAATGTGCTGCGGAATCACGTGGAAGAAATTGACAAGGCTGTCAACGAGACCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060260 GO:0060261 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000142 GO:2000144 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC4

Protein Analysis

108

Amino Acids

12.1

Weight (kDa)

6.83

Isoelectric Point (pI)

50.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC4	PF02229	44 - 95	4.6e-27	Transcriptional Coactivator p15 (PC4)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09240 AT5G09240 AT5G09240 AT5G09250 AT5G09250 AT5G09250 AT5G09250 AT5G09250
fragaria_vesca	FvH4_1g24880 FvH4_1g24880 FvH4_1g24880
malus_domestica	MD01G1006400.v1.1 MD15G1135200.v1.1
prunus_persica	Prupe.4G275800_v2.0.a1 Prupe.4G275800_v2.0.a1
pyrus_communis	pycom01g00780 pycom15g12190
rosa_chinensis	RchiOBHm_Chr2g0122541
rosa_laevigata	RLG00000018683
rosa_multiflora	Rmu_sc0003832.1_g000005 Rmu_sc0006704.1_g000005
rosa_roxburghii	Rroxscaffold_2G00121490
rosa_rugosa	Rorug02G0239400
rosa_samantha	Rh2BG306800 Rh2CG284900
rosa_wichuraiana	Rw2G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	125, 305
AccI	GTMKAC	1 cut(s)	189
AccII	CGCG	3 cut(s)	41, 68, 198
AciI	CCGC	1 cut(s)	277
AclWI	GGATC	1 cut(s)	267
AcvI	CACGTG	1 cut(s)	286
AflIII	ACRYGT	1 cut(s)	39
AjnI	CCWGG	1 cut(s)	229
Alw26I	GTCTC	2 cut(s)	87, 308
AlwI	GGATC	1 cut(s)	267
AoxI	GGCC	2 cut(s)	61, 81
ApeKI	GCWGC	1 cut(s)	274
AspLEI	GCGC	1 cut(s)	70
AspS9I	GGNCC	1 cut(s)	61
BbrPI	CACGTG	1 cut(s)	286
BbvI	GCAGC	1 cut(s)	261
BccI	CCATC	1 cut(s)	209
BciT130I	CCWGG	1 cut(s)	231
BcoDI	GTCTC	2 cut(s)	87, 308
BisI	GCNGC	1 cut(s)	275
BlsI	GCNGC	1 cut(s)	276
Bme1390I	CCNGG	1 cut(s)	231
BmgT120I	GGNCC	1 cut(s)	61
BmrFI	CCNGG	1 cut(s)	231
BsaAI	YACGTR	1 cut(s)	286
BsaI	GGTCTC	1 cut(s)	308
BsaXI	ACNNNNNCTCC	4 cut(s)	86, 92, 116, 122
Bse1I	ACTGG	1 cut(s)	173
BseBI	CCWGG	1 cut(s)	231
BseGI	GGATG	1 cut(s)	220
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	173
BseRI	GAGGAG	1 cut(s)	100
BseXI	GCAGC	1 cut(s)	261
Bsh1236I	CGCG	3 cut(s)	41, 68, 198
BshFI	GGCC	2 cut(s)	63, 83
BslFI	GGGAC	1 cut(s)	65
BsmAI	GTCTC	2 cut(s)	87, 308
BsmFI	GGGAC	1 cut(s)	65
BsnI	GGCC	2 cut(s)	63, 83
Bso31I	GGTCTC	1 cut(s)	308
Bsp143I	GATC	2 cut(s)	34, 259
Bsp68I	TCGCGA	1 cut(s)	198
BspACI	CCGC	1 cut(s)	277
BspANI	GGCC	2 cut(s)	63, 83
BspCNI	CTCAG	1 cut(s)	49
BspFNI	CGCG	3 cut(s)	41, 68, 198
BspPI	GGATC	1 cut(s)	267
BspTNI	GGTCTC	1 cut(s)	308
BsrI	ACTGG	1 cut(s)	173
BssMI	GATC	2 cut(s)	34, 259
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	1 cut(s)	127
Bst6I	CTCTTC	1 cut(s)	11
BstBAI	YACGTR	1 cut(s)	286
BstC8I	GCNNGC	1 cut(s)	221
BstDEI	CTNAG	2 cut(s)	57, 321
BstF5I	GGATG	1 cut(s)	220
BstFNI	CGCG	3 cut(s)	41, 68, 198
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	2 cut(s)	37, 262
BstMAI	GTCTC	2 cut(s)	87, 308
BstMBI	GATC	2 cut(s)	34, 259
BstNI	CCWGG	1 cut(s)	231
BstSCI	CCNGG	1 cut(s)	229
BstUI	CGCG	3 cut(s)	41, 68, 198
BstV1I	GCAGC	1 cut(s)	261
BsuRI	GGCC	2 cut(s)	63, 83
BtsCI	GGATG	1 cut(s)	220
BtsIMutI	CAGTG	2 cut(s)	123, 269
BtuMI	TCGCGA	1 cut(s)	198
Cac8I	GCNNGC	1 cut(s)	221
CfoI	GCGC	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	61
CseI	GACGC	1 cut(s)	30
CviJI	RGCY	3 cut(s)	63, 83, 305
CviKI_1	RGCY	3 cut(s)	63, 83, 305
DdeI	CTNAG	2 cut(s)	57, 321
DpnI	GATC	2 cut(s)	36, 261
DpnII	GATC	2 cut(s)	34, 259
DrdI	GACNNNNNNGTC	2 cut(s)	125, 305
DseDI	GACNNNNNNGTC	2 cut(s)	125, 305
Eam1104I	CTCTTC	1 cut(s)	11
EarI	CTCTTC	1 cut(s)	11
Eco147I	AGGCCT	1 cut(s)	83
Eco31I	GGTCTC	1 cut(s)	308
Eco72I	CACGTG	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	229
FaiI	YATR	1 cut(s)	207
FaqI	GGGAC	1 cut(s)	65
FblI	GTMKAC	1 cut(s)	189
Fnu4HI	GCNGC	1 cut(s)	275
FokI	GGATG	1 cut(s)	227
Fsp4HI	GCNGC	1 cut(s)	275
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	1 cut(s)	275
HaeIII	GGCC	2 cut(s)	63, 83
HgaI	GACGC	1 cut(s)	30
HhaI	GCGC	1 cut(s)	70
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HincII	GTYRAC	2 cut(s)	190, 310
HindII	GTYRAC	2 cut(s)	190, 310
HinfI	GANTC	5 cut(s)	53, 101, 107, 243, 280
Hpy166II	GTNNAC	2 cut(s)	190, 310
Hpy188I	TCNGA	3 cut(s)	58, 106, 115
Hpy188III	TCNNGA	2 cut(s)	45, 197
Hpy8I	GTNNAC	2 cut(s)	190, 310
Hpy99I	CGWCG	2 cut(s)	46, 119
HpyAV	CCTTC	1 cut(s)	144
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4IV	ACGT	1 cut(s)	285
HpyF3I	CTNAG	2 cut(s)	57, 321
HpySE526I	ACGT	1 cut(s)	285
HspAI	GCGC	1 cut(s)	68
Kzo9I	GATC	2 cut(s)	34, 259
LpnPI	CCDG	3 cut(s)	154, 216, 243
Lsp1109I	GCAGC	1 cut(s)	261
MaeII	ACGT	1 cut(s)	285
MalI	GATC	2 cut(s)	36, 261
MboI	GATC	2 cut(s)	34, 259
MboII	GAAGA	2 cut(s)	28, 302
MluCI	AATT	1 cut(s)	294
MluI	ACGCGT	1 cut(s)	39
MlyI	GAGTC	3 cut(s)	47, 95, 101
MmeI	TCCRAC	2 cut(s)	129, 138
MnlI	CCTC	7 cut(s)	5, 22, 41, 52, 94, 121, 156
MspR9I	CCNGG	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	231
MvnI	CGCG	3 cut(s)	41, 68, 198
NdeII	GATC	2 cut(s)	34, 259
NruI	TCGCGA	1 cut(s)	198
PceI	AGGCCT	1 cut(s)	83
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PfeI	GAWTC	2 cut(s)	243, 280
PkrI	GCNGC	1 cut(s)	276
PleI	GAGTC	3 cut(s)	47, 95, 101
PmaCI	CACGTG	1 cut(s)	286
PmlI	CACGTG	1 cut(s)	286
PpsI	GAGTC	3 cut(s)	47, 95, 101
Ppu21I	YACGTR	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	229
PspCI	CACGTG	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	229
PspPI	GGNCC	1 cut(s)	61
RruI	TCGCGA	1 cut(s)	198
SalI	GTCGAC	1 cut(s)	188
SatI	GCNGC	1 cut(s)	275
Sau3AI	GATC	2 cut(s)	34, 259
Sau96I	GGNCC	1 cut(s)	61
SchI	GAGTC	3 cut(s)	47, 95, 101
ScrFI	CCNGG	1 cut(s)	231
SetI	ASST	3 cut(s)	183, 288, 320
Sse9I	AATT	1 cut(s)	294
SseBI	AGGCCT	1 cut(s)	83
SsiI	CCGC	1 cut(s)	277
StuI	AGGCCT	1 cut(s)	83
StyD4I	CCNGG	1 cut(s)	229
TaaI	ACNGT	1 cut(s)	127
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	1 cut(s)	189
TasI	AATT	1 cut(s)	294
TfiI	GAWTC	2 cut(s)	243, 280
TscAI	CASTG	2 cut(s)	130, 269
TseI	GCWGC	1 cut(s)	274
TspRI	CASTG	2 cut(s)	130, 269
XmiI	GTMKAC	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.