AT5G09310

Presenilin enhancer-2 subunit of gamma secretase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0010505
Physical Location & Seq
Reverse (-)
2886897 .. 2888553
1657 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G09310.1

Sequence Viewer

Length: 441 bp
ATGGAGGCTACACGGAGCGACGACCCCAGTCTGAACCCTATACGCAATCGGAATCCGAATCCGAATCCGAATCCAAACCCATTGTCGACGATCATCTCTTCAGCTCAGGTTTGGCCAACCATTGACGGTCCGTTGGGGTTAACGGAGGAAGCATCGGTGGATTACGCTCGTCGATTCTACAAGTTCGGTTTCGCTCTCTTGCCTTGGCTTTGGTTTGTCAATTGCTTCTATTTCTGGCCTGTTCTCCGTCACTCTCGGGCTTTCCCTCAAATCCGCAATTATGTTGTCCGGTCAGCAATTGGCTTTAGTGTCTTTACAGCTCTTCTCTCCGCGTGGGCATTGACGTTCTCGATAGGAGGAGAACAACTGTTCGGCCCTCTTTACGATAAGCTGGTTATGTACAATGTTGCTGATCGTCTCGGCTTGTCTGGTTTGGCTTAG

Protein Analysis

146

Amino Acids

16.49

Weight (kDa)

8.89

Isoelectric Point (pI)

45.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PEN-2 PF10251 49 - 136 1.9e-28 Presenilin enhancer-2 subunit of gamma secretase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010505)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09310
fragaria_vesca FvH4_2g08820 FvH4_2g08820 FvH4_2g08820 FvH4_2g08820 FvH4_2g08820 FvH4_3g04510
malus_domestica MD02G1262600.v1.1 MD07G1057500.v1.1
prunus_persica Prupe.4G271100_v2.0.a1
pyrus_communis pycom02g22520
rosa_chinensis RchiOBHm_Chr6g0264391
rosa_laevigata RLG00000014257
rosa_multiflora Rmu_sc0004470.1_g000020
rosa_roxburghii Rroxscaffold_176G00431770
rosa_rugosa Rorug06G0012000 Rorug06G0012100
rosa_samantha Rh6BG129000 Rh6CG127000 Rh6DG114500
rosa_wichuraiana Rw6G011520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 86
AccII CGCG 1 cut(s) 332
AciI CCGC 2 cut(s) 274, 330
AcoI YGGCCR 1 cut(s) 113
AcuI CTGAAG 1 cut(s) 84
AfaI GTAC 1 cut(s) 401
AluBI AGCT 3 cut(s) 104, 320, 391
AluI AGCT 3 cut(s) 104, 320, 391
Alw26I GTCTC 1 cut(s) 422
Ama87I CYCGRG 1 cut(s) 255
AoxI GGCC 3 cut(s) 113, 236, 373
ArsI GACNNNNNNTTYG 2 cut(s) 68, 100
AspS9I GGNCC 2 cut(s) 128, 374
AvaI CYCGRG 1 cut(s) 255
AvaII GGWCC 1 cut(s) 128
BalI TGGCCA 1 cut(s) 115
BcoDI GTCTC 1 cut(s) 422
Bme18I GGWCC 1 cut(s) 128
BmeT110I CYCGRG 1 cut(s) 255
BmgT120I GGNCC 2 cut(s) 128, 374
BmrI ACTGGG 1 cut(s) 21
BmsI GCATC 1 cut(s) 161
BmuI ACTGGG 1 cut(s) 21
BoxI GACNNNNGTC 1 cut(s) 27
Bpu10I CCTNAGC 1 cut(s) 105
BsaJI CCNNGG 1 cut(s) 203
BsaWI WCCGGW 1 cut(s) 288
Bse1I ACTGG 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 203
BseMII CTCAG 1 cut(s) 119
BseNI ACTGG 1 cut(s) 27
BseRI GAGGAG 1 cut(s) 372
Bsh1236I CGCG 1 cut(s) 332
BshFI GGCC 3 cut(s) 115, 238, 375
BsiHKCI CYCGRG 1 cut(s) 255
BsiSI CCGG 1 cut(s) 289
BsmAI GTCTC 1 cut(s) 422
BsmBI CGTCTC 1 cut(s) 422
BsnI GGCC 3 cut(s) 115, 238, 375
BsoBI CYCGRG 1 cut(s) 255
Bsp1407I TGTACA 1 cut(s) 399
Bsp143I GATC 2 cut(s) 90, 412
BspACI CCGC 2 cut(s) 274, 330
BspANI GGCC 3 cut(s) 115, 238, 375
BspCNI CTCAG 1 cut(s) 118
BspFNI CGCG 1 cut(s) 332
BspQI GCTCTTC 1 cut(s) 327
BsrGI TGTACA 1 cut(s) 399
BsrI ACTGG 1 cut(s) 27
BssECI CCNNGG 1 cut(s) 203
BssMI GATC 2 cut(s) 90, 412
BssT1I CCWWGG 1 cut(s) 203
Bst4CI ACNGT 2 cut(s) 128, 369
Bst6I CTCTTC 2 cut(s) 103, 327
BstAUI TGTACA 1 cut(s) 399
BstDEI CTNAG 2 cut(s) 105, 438
BstFNI CGCG 1 cut(s) 332
BstKTI GATC 2 cut(s) 93, 415
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 2 cut(s) 90, 412
BstPAI GACNNNNGTC 1 cut(s) 27
BstUI CGCG 1 cut(s) 332
BsuRI GGCC 3 cut(s) 115, 238, 375
Cfr13I GGNCC 2 cut(s) 128, 374
CpoI CGGWCCG 1 cut(s) 128
Csp6I GTAC 1 cut(s) 400
CspI CGGWCCG 1 cut(s) 128
CviQI GTAC 1 cut(s) 400
DdeI CTNAG 2 cut(s) 105, 438
DpnI GATC 2 cut(s) 92, 414
DpnII GATC 2 cut(s) 90, 412
EaeI YGGCCR 1 cut(s) 113
Eam1104I CTCTTC 2 cut(s) 103, 327
EarI CTCTTC 2 cut(s) 103, 327
Eco130I CCWWGG 1 cut(s) 203
Eco47I GGWCC 1 cut(s) 128
Eco57I CTGAAG 1 cut(s) 84
Eco88I CYCGRG 1 cut(s) 255
EcoT14I CCWWGG 1 cut(s) 203
ErhI CCWWGG 1 cut(s) 203
Esp3I CGTCTC 1 cut(s) 422
FaiI YATR 3 cut(s) 41, 282, 398
FblI GTMKAC 1 cut(s) 86
HaeIII GGCC 3 cut(s) 115, 238, 375
HapII CCGG 1 cut(s) 289
HincII GTYRAC 2 cut(s) 87, 141
HindII GTYRAC 2 cut(s) 87, 141
HinfI GANTC 5 cut(s) 52, 58, 64, 70, 174
HpaI GTTAAC 1 cut(s) 141
HpaII CCGG 1 cut(s) 289
Hpy166II GTNNAC 2 cut(s) 87, 141
Hpy188I TCNGA 5 cut(s) 33, 51, 57, 63, 69
Hpy188III TCNNGA 1 cut(s) 349
Hpy8I GTNNAC 2 cut(s) 87, 141
Hpy99I CGWCG 3 cut(s) 23, 91, 174
HpyCH4III ACNGT 2 cut(s) 128, 369
HpyCH4IV ACGT 1 cut(s) 344
HpyF3I CTNAG 2 cut(s) 105, 438
HpySE526I ACGT 1 cut(s) 344
KspAI GTTAAC 1 cut(s) 141
Kzo9I GATC 2 cut(s) 90, 412
LguI GCTCTTC 1 cut(s) 327
LmnI GCTCC 1 cut(s) 15
LpnPI CCDG 7 cut(s) 40, 92, 220, 252, 302, 377, 414
LweI GCATC 1 cut(s) 161
MaeII ACGT 1 cut(s) 344
MaeIII GTNAC 1 cut(s) 248
MalI GATC 2 cut(s) 92, 414
MboI GATC 2 cut(s) 90, 412
MboII GAAGA 2 cut(s) 90, 314
MfeI CAATTG 2 cut(s) 220, 297
MlsI TGGCCA 1 cut(s) 115
MluCI AATT 3 cut(s) 220, 277, 297
MluNI TGGCCA 1 cut(s) 115
MnlI CCTC 4 cut(s) 139, 276, 350, 387
Mox20I TGGCCA 1 cut(s) 115
MscI TGGCCA 1 cut(s) 115
MseI TTAA 1 cut(s) 140
Msp20I TGGCCA 1 cut(s) 115
MspI CCGG 1 cut(s) 289
MunI CAATTG 2 cut(s) 220, 297
MvnI CGCG 1 cut(s) 332
NdeII GATC 2 cut(s) 90, 412
NmeAIII GCCGAG 1 cut(s) 399
NmuCI GTSAC 1 cut(s) 248
PciSI GCTCTTC 1 cut(s) 327
PfeI GAWTC 5 cut(s) 52, 58, 64, 70, 174
PshAI GACNNNNGTC 1 cut(s) 27
PspPI GGNCC 2 cut(s) 128, 374
RsaI GTAC 1 cut(s) 401
RsaNI GTAC 1 cut(s) 400
Rsr2I CGGWCCG 1 cut(s) 128
RsrII CGGWCCG 1 cut(s) 128
SalI GTCGAC 1 cut(s) 85
SapI GCTCTTC 1 cut(s) 327
SaqAI TTAA 1 cut(s) 140
Sau3AI GATC 2 cut(s) 90, 412
Sau96I GGNCC 2 cut(s) 128, 374
SetI ASST 5 cut(s) 106, 111, 322, 347, 393
SfaNI GCATC 1 cut(s) 161
SinI GGWCC 1 cut(s) 128
Sse9I AATT 3 cut(s) 220, 277, 297
SsiI CCGC 2 cut(s) 274, 330
StyI CCWWGG 1 cut(s) 203
TaaI ACNGT 2 cut(s) 128, 369
TaiI ACGT 1 cut(s) 347
TaqI TCGA 3 cut(s) 86, 172, 350
TasI AATT 3 cut(s) 220, 277, 297
TatI WGTACW 1 cut(s) 399
TfiI GAWTC 5 cut(s) 52, 58, 64, 70, 174
Tru1I TTAA 1 cut(s) 140
Tru9I TTAA 1 cut(s) 140
TseFI GTSAC 1 cut(s) 248
Tsp45I GTSAC 1 cut(s) 248
TspGWI ACGGA 4 cut(s) 28, 120, 158, 236
VpaK11BI GGWCC 1 cut(s) 128
XmiI GTMKAC 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.