FvH4_3g04510

amyloid-beta formation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0010505
Physical Location & Seq
Reverse (-)
2584220 .. 2585013
794 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g04510.t1

Sequence Viewer

Length: 381 bp
ATGGTGAGAGGGGCGAGGTGCTGCCCAGTTCTTGAAGCTGAGTCGAGGTGCTGCAAAGTCGAGGTGGTGGAGGAAGAATCCGTCAGCTATGCCCATCGGTTCTACAAGTTCGGTTTTGCTCTGCTTCCGTTGCTTTGGGCCGTCAACTGCTTCTACTTCTGGCCCGCTCTCCGCCACTCCCGCTCTTTCCCTCTCATCCACCACTACGTTCTCAGATCCGCCGTCGGATTCGCCATGTTCACTGCTCTGCTCTCATCGTGGGCCCTCACATTTGGGATCGGAGGAGAGCGTCTATTCGGGCATGTCTGGGATGAGCTGGTCATGTATAACCTTGCTGATAGGCTTGGACTCACCGAGTCGACGGCGAGAGAGGCGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001667 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005794 GO:0005798 GO:0005886 GO:0005887 GO:0006508 GO:0006509 GO:0006518 GO:0006807 GO:0006928 GO:0007154 GO:0007165 GO:0007166 GO:0007219 GO:0007220 GO:0007275 GO:0007276 GO:0007281 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0010631 GO:0010941 GO:0012505 GO:0016020 GO:0016021 GO:0016477 GO:0016485 GO:0019538 GO:0019953 GO:0022412 GO:0022414 GO:0023052 GO:0030154 GO:0031224 GO:0031226 GO:0031293 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033619 GO:0034205 GO:0034641 GO:0035295 GO:0035333 GO:0040011 GO:0042981 GO:0042982 GO:0042987 GO:0043066 GO:0043067 GO:0043069 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043473 GO:0043523 GO:0043524 GO:0043603 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044703 GO:0045165 GO:0048066 GO:0048468 GO:0048519 GO:0048523 GO:0048565 GO:0048598 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0048870 GO:0050435 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051604 GO:0051674 GO:0051704 GO:0051716 GO:0055037 GO:0055123 GO:0060465 GO:0060548 GO:0065007 GO:0065009 GO:0070765 GO:0071704 GO:0071944 GO:0090130 GO:0090132 GO:0097324 GO:0097708 GO:0098796 GO:0098797 GO:1901214 GO:1901215 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko00195 ko01100 ko04330 ko05010 map00195 map01100 map04330 map05010
Pfam Domains
Protein Families
PEN-2

Protein Analysis

127

Amino Acids

14.45

Weight (kDa)

7.69

Isoelectric Point (pI)

53.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PEN-2 PF10251 24 - 111 1.4e-26 Presenilin enhancer-2 subunit of gamma secretase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010505)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09310
fragaria_vesca FvH4_2g08820 FvH4_2g08820 FvH4_2g08820 FvH4_2g08820 FvH4_2g08820 FvH4_3g04510
malus_domestica MD02G1262600.v1.1 MD07G1057500.v1.1
prunus_persica Prupe.4G271100_v2.0.a1
pyrus_communis pycom02g22520
rosa_chinensis RchiOBHm_Chr6g0264391
rosa_laevigata RLG00000014257
rosa_multiflora Rmu_sc0004470.1_g000020
rosa_roxburghii Rroxscaffold_176G00431770
rosa_rugosa Rorug06G0012000 Rorug06G0012100
rosa_samantha Rh6BG129000 Rh6CG127000 Rh6DG114500
rosa_wichuraiana Rw6G011520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 167, 183
AccI GTMKAC 1 cut(s) 359
AciI CCGC 4 cut(s) 165, 172, 181, 219
AclWI GGATC 2 cut(s) 210, 284
AgsI TTSAA 1 cut(s) 35
AluBI AGCT 3 cut(s) 38, 87, 316
AluI AGCT 3 cut(s) 38, 87, 316
AlwI GGATC 2 cut(s) 210, 284
AoxI GGCC 3 cut(s) 138, 161, 261
ApaI GGGCCC 1 cut(s) 265
ApeKI GCWGC 2 cut(s) 21, 51
AspS9I GGNCC 4 cut(s) 138, 162, 261, 262
AsuHPI GGTGA 2 cut(s) 16, 343
BaeGI GKGCMC 1 cut(s) 265
BanII GRGCYC 1 cut(s) 265
BbvI GCAGC 2 cut(s) 8, 38
BccI CCATC 1 cut(s) 102
BceAI ACGGC 3 cut(s) 125, 206, 378
BisI GCNGC 2 cut(s) 22, 52
BlsI GCNGC 2 cut(s) 23, 53
BmgT120I GGNCC 4 cut(s) 138, 162, 261, 262
BmiI GGNNCC 1 cut(s) 263
BmrI ACTGGG 1 cut(s) 20
BmuI ACTGGG 1 cut(s) 20
Bse1I ACTGG 1 cut(s) 26
BseGI GGATG 2 cut(s) 195, 316
BseMII CTCAG 2 cut(s) 30, 226
BseNI ACTGG 1 cut(s) 26
BseRI GAGGAG 1 cut(s) 297
BseSI GKGCMC 1 cut(s) 265
BseXI GCAGC 2 cut(s) 8, 38
BshFI GGCC 3 cut(s) 140, 163, 263
BsnI GGCC 3 cut(s) 140, 163, 263
Bsp120I GGGCCC 1 cut(s) 261
Bsp1286I GDGCHC 1 cut(s) 265
Bsp143I GATC 2 cut(s) 215, 276
BspACI CCGC 4 cut(s) 165, 172, 181, 219
BspANI GGCC 3 cut(s) 140, 163, 263
BspCNI CTCAG 2 cut(s) 31, 225
BspLI GGNNCC 1 cut(s) 263
BspPI GGATC 2 cut(s) 210, 284
BsrBI CCGCTC 2 cut(s) 167, 183
BsrI ACTGG 1 cut(s) 26
BssMI GATC 2 cut(s) 215, 276
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 2 cut(s) 39, 212
BstF5I GGATG 2 cut(s) 195, 316
BstKTI GATC 2 cut(s) 218, 279
BstMBI GATC 2 cut(s) 215, 276
BstMWI GCNNNNNNNGC 3 cut(s) 130, 180, 371
BstNSI RCATGY 1 cut(s) 305
BstSLI GKGCMC 1 cut(s) 265
BstV1I GCAGC 2 cut(s) 8, 38
BstX2I RGATCY 1 cut(s) 215
BstYI RGATCY 1 cut(s) 215
BsuRI GGCC 3 cut(s) 140, 163, 263
BtsCI GGATG 2 cut(s) 195, 316
BtsI GCAGTG 1 cut(s) 240
BtsIMutI CAGTG 1 cut(s) 240
Cac8I GCNNGC 1 cut(s) 165
Cfr13I GGNCC 4 cut(s) 138, 162, 261, 262
CseI GACGC 1 cut(s) 278
CviAII CATG 3 cut(s) 235, 302, 322
CviJI RGCY 7 cut(s) 38, 87, 140, 163, 263, 316, 343
CviKI_1 RGCY 7 cut(s) 38, 87, 140, 163, 263, 316, 343
DdeI CTNAG 2 cut(s) 39, 212
DpnI GATC 2 cut(s) 217, 278
DpnII GATC 2 cut(s) 215, 276
EciI GGCGGA 2 cut(s) 161, 208
Eco24I GRGCYC 1 cut(s) 265
EcoO109I RGGNCCY 1 cut(s) 262
EcoT38I GRGCYC 1 cut(s) 265
FaeI CATG 3 cut(s) 238, 305, 325
FaiI YATR 5 cut(s) 90, 236, 303, 323, 327
FatI CATG 3 cut(s) 234, 301, 321
FauI CCCGC 2 cut(s) 172, 188
FblI GTMKAC 1 cut(s) 359
Fnu4HI GCNGC 2 cut(s) 22, 52
FokI GGATG 2 cut(s) 182, 323
FriOI GRGCYC 1 cut(s) 265
Fsp4HI GCNGC 2 cut(s) 22, 52
GluI GCNGC 2 cut(s) 22, 52
HaeIII GGCC 3 cut(s) 140, 163, 263
HgaI GACGC 1 cut(s) 278
Hin1II CATG 3 cut(s) 238, 305, 325
HincII GTYRAC 2 cut(s) 145, 360
HindII GTYRAC 2 cut(s) 145, 360
HinfI GANTC 5 cut(s) 41, 77, 228, 348, 356
HphI GGTGA 2 cut(s) 16, 343
Hpy166II GTNNAC 3 cut(s) 145, 240, 360
Hpy188I TCNGA 3 cut(s) 215, 227, 281
Hpy188III TCNNGA 1 cut(s) 32
Hpy8I GTNNAC 3 cut(s) 145, 240, 360
Hpy99I CGWCG 2 cut(s) 227, 364
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 1 cut(s) 54
HpyF10VI GCNNNNNNNGC 3 cut(s) 130, 180, 371
HpyF3I CTNAG 2 cut(s) 39, 212
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 3 cut(s) 238, 305, 325
Kzo9I GATC 2 cut(s) 215, 276
LpnPI CCDG 4 cut(s) 39, 145, 292, 302
Lsp1109I GCAGC 2 cut(s) 8, 38
MaeII ACGT 1 cut(s) 207
MalI GATC 2 cut(s) 217, 278
MbiI CCGCTC 2 cut(s) 167, 183
MboI GATC 2 cut(s) 215, 276
MboII GAAGA 1 cut(s) 86
MflI RGATCY 1 cut(s) 215
MhlI GDGCHC 1 cut(s) 265
MlyI GAGTC 3 cut(s) 50, 342, 365
MmeI TCCRAC 1 cut(s) 205
MnlI CCTC 9 cut(s) 9, 39, 55, 64, 201, 275, 275, 364, 369
MwoI GCNNNNNNNGC 3 cut(s) 130, 180, 371
NdeII GATC 2 cut(s) 215, 276
NlaIII CATG 3 cut(s) 238, 305, 325
NlaIV GGNNCC 1 cut(s) 263
NspI RCATGY 1 cut(s) 305
PfeI GAWTC 2 cut(s) 77, 228
PkrI GCNGC 2 cut(s) 23, 53
PleI GAGTC 3 cut(s) 49, 342, 364
PpsI GAGTC 3 cut(s) 49, 342, 364
PspN4I GGNNCC 1 cut(s) 263
PspOMI GGGCCC 1 cut(s) 261
PspPI GGNCC 4 cut(s) 138, 162, 261, 262
PsuI RGATCY 1 cut(s) 215
SalI GTCGAC 1 cut(s) 358
SatI GCNGC 2 cut(s) 22, 52
Sau3AI GATC 2 cut(s) 215, 276
Sau96I GGNCC 4 cut(s) 138, 162, 261, 262
SchI GAGTC 3 cut(s) 50, 342, 365
SduI GDGCHC 1 cut(s) 265
SetI ASST 9 cut(s) 20, 40, 50, 66, 89, 210, 318, 333, 380
SsiI CCGC 4 cut(s) 165, 172, 181, 219
TaiI ACGT 1 cut(s) 210
TaqI TCGA 3 cut(s) 44, 60, 359
TfiI GAWTC 2 cut(s) 77, 228
TscAI CASTG 1 cut(s) 247
TseI GCWGC 2 cut(s) 21, 51
TspGWI ACGGA 2 cut(s) 70, 117
TspRI CASTG 1 cut(s) 247
XceI RCATGY 1 cut(s) 305
XmiI GTMKAC 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.