Rorug06G0012100

amyloid-beta formation

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
1624771 .. 1625504
734 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0012100.1

Sequence Viewer

Length: 342 bp
ATGGCCGACGATTATGTCCTCATTCCAAACGGAGAAGACGACCATGCACTCATCACCACCACTCCCAAGCCTCCATGTGTCGCCTCCCTCGACATCTTCCGCTGCCTCTGCGTCTTCTTTTTGATGGAATTCTGGTGCTTGATTTGTGATGCATTGCTTGAATTCCCAGCTGATGATGGTGGTGGATTACAGCGGCTCAATTATTCCGCGTGGAACGGTCTCCATTTGGCTGACTTTGTGATGCCGTTTTTTCTCTTCATTGCCGGAGTTTCTCTTGCTTTGGTCTATAAGGAAGATCACTATCCAACAAGCGTTTGGATTGGCTGTCCAGATACAAAATAG
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

113

Amino Acids

12.67

Weight (kDa)

4.23

Isoelectric Point (pI)

31.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010505)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 14
AccII CGCG 1 cut(s) 209
AciI CCGC 3 cut(s) 100, 193, 207
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 128, 161
AgsI TTSAA 1 cut(s) 161
AluBI AGCT 1 cut(s) 170
AluI AGCT 1 cut(s) 170
Alw26I GTCTC 1 cut(s) 224
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 102
ApoI RAATTY 2 cut(s) 128, 161
AsuHPI GGTGA 1 cut(s) 46
BbsI GAAGAC 2 cut(s) 42, 106
BbvI GCAGC 1 cut(s) 89
BccI CCATC 2 cut(s) 118, 170
BceAI ACGGC 1 cut(s) 229
BcoDI GTCTC 1 cut(s) 224
BisI GCNGC 2 cut(s) 103, 194
BlsI GCNGC 2 cut(s) 104, 195
BmsI GCATC 2 cut(s) 139, 231
BpiI GAAGAC 2 cut(s) 42, 106
BsaBI GATNNNNATC 1 cut(s) 300
BsaI GGTCTC 1 cut(s) 224
BsaXI ACNNNNNCTCC 2 cut(s) 46, 76
Bse3DI GCAATG 2 cut(s) 152, 258
Bse8I GATNNNNATC 1 cut(s) 300
BseJI GATNNNNATC 1 cut(s) 300
BseMI GCAATG 2 cut(s) 152, 258
BseXI GCAGC 1 cut(s) 89
BseYI CCCAGC 1 cut(s) 166
Bsh1236I CGCG 1 cut(s) 209
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 264
BsmAI GTCTC 1 cut(s) 224
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 224
Bsp143I GATC 1 cut(s) 295
BspACI CCGC 3 cut(s) 100, 193, 207
BspANI GGCC 1 cut(s) 5
BspFNI CGCG 1 cut(s) 209
BspTNI GGTCTC 1 cut(s) 224
BsrDI GCAATG 2 cut(s) 152, 258
BssMI GATC 1 cut(s) 295
Bst4CI ACNGT 1 cut(s) 218
Bst6I CTCTTC 1 cut(s) 260
BstFNI CGCG 1 cut(s) 209
BstKTI GATC 1 cut(s) 298
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 1 cut(s) 295
BstMWI GCNNNNNNNGC 1 cut(s) 108
BstUI CGCG 1 cut(s) 209
BstV1I GCAGC 1 cut(s) 89
BstV2I GAAGAC 2 cut(s) 42, 106
BsuRI GGCC 1 cut(s) 5
CseI GACGC 1 cut(s) 100
CviAII CATG 2 cut(s) 44, 75
CviJI RGCY 6 cut(s) 5, 70, 170, 196, 230, 324
CviKI_1 RGCY 6 cut(s) 5, 70, 170, 196, 230, 324
DpnI GATC 1 cut(s) 297
DpnII GATC 1 cut(s) 295
DrdI GACNNNNNNGTC 1 cut(s) 14
DseDI GACNNNNNNGTC 1 cut(s) 14
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
Eco31I GGTCTC 1 cut(s) 224
EcoRI GAATTC 2 cut(s) 128, 161
EcoT22I ATGCAT 1 cut(s) 154
FaeI CATG 2 cut(s) 47, 78
FaiI YATR 4 cut(s) 15, 45, 76, 288
FatI CATG 2 cut(s) 43, 74
Fnu4HI GCNGC 2 cut(s) 103, 194
Fsp4HI GCNGC 2 cut(s) 103, 194
GluI GCNGC 2 cut(s) 103, 194
GsaI CCCAGC 1 cut(s) 170
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 264
HgaI GACGC 1 cut(s) 100
Hin1II CATG 2 cut(s) 47, 78
HpaII CCGG 1 cut(s) 264
HphI GGTGA 1 cut(s) 46
Hpy188III TCNNGA 1 cut(s) 329
Hpy99I CGWCG 1 cut(s) 11
HpyCH4III ACNGT 1 cut(s) 218
HpyCH4V TGCA 2 cut(s) 47, 152
HpyF10VI GCNNNNNNNGC 1 cut(s) 108
Hsp92II CATG 2 cut(s) 47, 78
Kzo9I GATC 1 cut(s) 295
LpnPI CCDG 3 cut(s) 118, 180, 277
Lsp1109I GCAGC 1 cut(s) 89
LweI GCATC 2 cut(s) 139, 231
MalI GATC 1 cut(s) 297
MboI GATC 1 cut(s) 295
MboII GAAGA 5 cut(s) 47, 88, 106, 247, 305
MluCI AATT 3 cut(s) 128, 161, 199
MmeI TCCRAC 1 cut(s) 329
MnlI CCTC 5 cut(s) 29, 81, 94, 98, 116
Mph1103I ATGCAT 1 cut(s) 154
MspA1I CMGCKG 3 cut(s) 102, 170, 193
MspI CCGG 1 cut(s) 264
MvnI CGCG 1 cut(s) 209
MwoI GCNNNNNNNGC 1 cut(s) 108
NdeII GATC 1 cut(s) 295
NlaIII CATG 2 cut(s) 47, 78
NsiI ATGCAT 1 cut(s) 154
PcsI WCGNNNNNNNCGW 2 cut(s) 36, 87
PkrI GCNGC 2 cut(s) 104, 195
PspFI CCCAGC 1 cut(s) 166
PvuII CAGCTG 1 cut(s) 170
SatI GCNGC 2 cut(s) 103, 194
Sau3AI GATC 1 cut(s) 295
SetI ASST 1 cut(s) 172
SfaNI GCATC 2 cut(s) 139, 231
Sse9I AATT 3 cut(s) 128, 161, 199
SsiI CCGC 3 cut(s) 100, 193, 207
TaaI ACNGT 1 cut(s) 218
TaqI TCGA 1 cut(s) 90
TasI AATT 3 cut(s) 128, 161, 199
TauI GCSGC 1 cut(s) 196
TseI GCWGC 1 cut(s) 102
TspDTI ATGAA 1 cut(s) 247
TspGWI ACGGA 1 cut(s) 45
XapI RAATTY 2 cut(s) 128, 161
XcmI CCANNNNNNNNNTGG 1 cut(s) 312
Zsp2I ATGCAT 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.