FvH4_2g08820

amyloid-beta formation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0010505
Physical Location & Seq
Forward (+)
7705967 .. 7711048
5082 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g08820.t2

Sequence Viewer

Length: 405 bp
ATGGAAGCCACCACCGATACCCCAAACCCTAACCCGAGCCCAAGGATTCTCCTCCCCTTGTCCTCTTCCCCCCTGTGGCCCACCATCGACGGTCCTCTTGGTCTATCGGAGGAAGAATCCGTCAGCTACGCCCGTCGGTTCTACAAGTTCGGTTTTGCTCTGCTTCCGTTGCTTTGGGCCGTCAACTGCTTCTACTTCTGGCCCGCTCTCCGCAACTCCCGCTCTTTCCCTCTCATCCACCACTACGTTCTCAGATCCGCCGTCGGATTCGCCGTGTTCACTGCTCTGCTCTCGTCGTGGGCCCTTACCTTTGGGATCGGAGGAGAGCGTCTGTTCGGGCATGTCTGGGATGAGCTGGTCATGTATAACCTTGCTGATAGGCTTGGACTCACCGGATGGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001667 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005794 GO:0005798 GO:0005886 GO:0005887 GO:0006508 GO:0006509 GO:0006518 GO:0006807 GO:0006928 GO:0007154 GO:0007165 GO:0007166 GO:0007219 GO:0007220 GO:0007275 GO:0007276 GO:0007281 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0010631 GO:0010941 GO:0012505 GO:0016020 GO:0016021 GO:0016477 GO:0016485 GO:0019538 GO:0019953 GO:0022412 GO:0022414 GO:0023052 GO:0030154 GO:0031224 GO:0031226 GO:0031293 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033619 GO:0034205 GO:0034641 GO:0035295 GO:0035333 GO:0040011 GO:0042981 GO:0042982 GO:0042987 GO:0043066 GO:0043067 GO:0043069 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043473 GO:0043523 GO:0043524 GO:0043603 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044703 GO:0045165 GO:0048066 GO:0048468 GO:0048519 GO:0048523 GO:0048565 GO:0048598 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0048870 GO:0050435 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051604 GO:0051674 GO:0051704 GO:0051716 GO:0055037 GO:0055123 GO:0060465 GO:0060548 GO:0065007 GO:0065009 GO:0070765 GO:0071704 GO:0071944 GO:0090130 GO:0090132 GO:0097324 GO:0097708 GO:0098796 GO:0098797 GO:1901214 GO:1901215 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko00195 ko01100 ko04330 ko05010 map00195 map01100 map04330 map05010
Pfam Domains
Protein Families
PEN-2

Protein Analysis

135

Amino Acids

15.1

Weight (kDa)

6.26

Isoelectric Point (pI)

63.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PEN-2 PF10251 37 - 124 8.5e-28 Presenilin enhancer-2 subunit of gamma secretase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010505)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09310
fragaria_vesca FvH4_2g08820 FvH4_2g08820 FvH4_2g08820 FvH4_2g08820 FvH4_2g08820 FvH4_3g04510
malus_domestica MD02G1262600.v1.1 MD07G1057500.v1.1
prunus_persica Prupe.4G271100_v2.0.a1
pyrus_communis pycom02g22520
rosa_chinensis RchiOBHm_Chr6g0264391
rosa_laevigata RLG00000014257
rosa_multiflora Rmu_sc0004470.1_g000020
rosa_roxburghii Rroxscaffold_176G00431770
rosa_rugosa Rorug06G0012000 Rorug06G0012100
rosa_samantha Rh6BG129000 Rh6CG127000 Rh6DG114500
rosa_wichuraiana Rw6G011520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 206, 222
AciI CCGC 4 cut(s) 204, 211, 220, 258
AclWI GGATC 2 cut(s) 249, 323
AfiI CCNNNNNNNGG 1 cut(s) 75
AluBI AGCT 3 cut(s) 126, 355, 402
AluI AGCT 3 cut(s) 126, 355, 402
AlwI GGATC 2 cut(s) 249, 323
Ama87I CYCGRG 1 cut(s) 34
AoxI GGCC 4 cut(s) 77, 177, 200, 300
ApaI GGGCCC 1 cut(s) 304
AspS9I GGNCC 6 cut(s) 78, 92, 177, 201, 300, 301
AsuHPI GGTGA 1 cut(s) 382
AvaI CYCGRG 1 cut(s) 34
AvaII GGWCC 1 cut(s) 92
BaeGI GKGCMC 1 cut(s) 304
BanII GRGCYC 2 cut(s) 41, 304
BccI CCATC 2 cut(s) 92, 390
BceAI ACGGC 3 cut(s) 164, 245, 257
Bme18I GGWCC 1 cut(s) 92
BmeT110I CYCGRG 1 cut(s) 34
BmgT120I GGNCC 6 cut(s) 78, 92, 177, 201, 300, 301
BmiI GGNNCC 1 cut(s) 302
BsaJI CCNNGG 1 cut(s) 41
BsaWI WCCGGW 1 cut(s) 392
Bsc4I CCNNNNNNNGG 1 cut(s) 75
BseDI CCNNGG 1 cut(s) 41
BseGI GGATG 3 cut(s) 234, 355, 401
BseLI CCNNNNNNNGG 1 cut(s) 75
BseMII CTCAG 1 cut(s) 265
BseRI GAGGAG 2 cut(s) 41, 336
BseSI GKGCMC 1 cut(s) 304
BshFI GGCC 4 cut(s) 79, 179, 202, 302
BsiHKCI CYCGRG 1 cut(s) 34
BsiSI CCGG 1 cut(s) 393
BslI CCNNNNNNNGG 1 cut(s) 75
BsnI GGCC 4 cut(s) 79, 179, 202, 302
BsoBI CYCGRG 1 cut(s) 34
Bsp120I GGGCCC 1 cut(s) 300
Bsp1286I GDGCHC 2 cut(s) 41, 304
Bsp143I GATC 2 cut(s) 254, 315
BspACI CCGC 4 cut(s) 204, 211, 220, 258
BspANI GGCC 4 cut(s) 79, 179, 202, 302
BspCNI CTCAG 1 cut(s) 264
BspLI GGNNCC 1 cut(s) 302
BspPI GGATC 2 cut(s) 249, 323
BsrBI CCGCTC 2 cut(s) 206, 222
BssECI CCNNGG 1 cut(s) 41
BssMI GATC 2 cut(s) 254, 315
BssT1I CCWWGG 1 cut(s) 41
Bst4CI ACNGT 1 cut(s) 92
Bst6I CTCTTC 1 cut(s) 70
BstC8I GCNNGC 1 cut(s) 204
BstDEI CTNAG 1 cut(s) 251
BstF5I GGATG 3 cut(s) 234, 355, 401
BstKTI GATC 2 cut(s) 257, 318
BstMBI GATC 2 cut(s) 254, 315
BstMWI GCNNNNNNNGC 2 cut(s) 169, 219
BstNSI RCATGY 1 cut(s) 344
BstSLI GKGCMC 1 cut(s) 304
BstX2I RGATCY 1 cut(s) 254
BstYI RGATCY 1 cut(s) 254
BsuRI GGCC 4 cut(s) 79, 179, 202, 302
BtsCI GGATG 3 cut(s) 234, 355, 401
BtsI GCAGTG 1 cut(s) 279
BtsIMutI CAGTG 1 cut(s) 279
Cac8I GCNNGC 1 cut(s) 204
Cfr13I GGNCC 6 cut(s) 78, 92, 177, 201, 300, 301
CseI GACGC 1 cut(s) 317
CviAII CATG 2 cut(s) 341, 361
DdeI CTNAG 1 cut(s) 251
DpnI GATC 2 cut(s) 256, 317
DpnII GATC 2 cut(s) 254, 315
Eam1104I CTCTTC 1 cut(s) 70
EarI CTCTTC 1 cut(s) 70
EciI GGCGGA 1 cut(s) 247
Eco130I CCWWGG 1 cut(s) 41
Eco24I GRGCYC 2 cut(s) 41, 304
Eco47I GGWCC 1 cut(s) 92
Eco88I CYCGRG 1 cut(s) 34
EcoO109I RGGNCCY 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 41
EcoT38I GRGCYC 2 cut(s) 41, 304
ErhI CCWWGG 1 cut(s) 41
FaeI CATG 2 cut(s) 344, 364
FaiI YATR 3 cut(s) 342, 362, 366
FatI CATG 2 cut(s) 340, 360
FauI CCCGC 2 cut(s) 211, 227
FokI GGATG 2 cut(s) 221, 362
FriOI GRGCYC 2 cut(s) 41, 304
HaeIII GGCC 4 cut(s) 79, 179, 202, 302
HapII CCGG 1 cut(s) 393
HgaI GACGC 1 cut(s) 317
Hin1II CATG 2 cut(s) 344, 364
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HinfI GANTC 4 cut(s) 46, 116, 267, 387
HpaII CCGG 1 cut(s) 393
HphI GGTGA 1 cut(s) 382
Hpy166II GTNNAC 2 cut(s) 184, 279
Hpy188I TCNGA 4 cut(s) 109, 254, 266, 320
Hpy8I GTNNAC 2 cut(s) 184, 279
Hpy99I CGWCG 4 cut(s) 92, 138, 266, 298
HpyCH4III ACNGT 1 cut(s) 92
HpyCH4IV ACGT 1 cut(s) 246
HpyF10VI GCNNNNNNNGC 2 cut(s) 169, 219
HpyF3I CTNAG 1 cut(s) 251
HpySE526I ACGT 1 cut(s) 246
Hsp92II CATG 2 cut(s) 344, 364
Kzo9I GATC 2 cut(s) 254, 315
LmnI GCTCC 1 cut(s) 399
LpnPI CCDG 4 cut(s) 86, 184, 331, 341
MaeII ACGT 1 cut(s) 246
MalI GATC 2 cut(s) 256, 317
MbiI CCGCTC 2 cut(s) 206, 222
MboI GATC 2 cut(s) 254, 315
MboII GAAGA 2 cut(s) 57, 125
MflI RGATCY 1 cut(s) 254
MhlI GDGCHC 2 cut(s) 41, 304
MlyI GAGTC 1 cut(s) 381
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 6 cut(s) 62, 73, 103, 105, 240, 314
MspI CCGG 1 cut(s) 393
MwoI GCNNNNNNNGC 2 cut(s) 169, 219
NdeII GATC 2 cut(s) 254, 315
NlaIII CATG 2 cut(s) 344, 364
NlaIV GGNNCC 1 cut(s) 302
NspI RCATGY 1 cut(s) 344
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PfeI GAWTC 3 cut(s) 46, 116, 267
PleI GAGTC 1 cut(s) 381
PpsI GAGTC 1 cut(s) 381
PspN4I GGNNCC 1 cut(s) 302
PspOMI GGGCCC 1 cut(s) 300
PspPI GGNCC 6 cut(s) 78, 92, 177, 201, 300, 301
PsuI RGATCY 1 cut(s) 254
Sau3AI GATC 2 cut(s) 254, 315
Sau96I GGNCC 6 cut(s) 78, 92, 177, 201, 300, 301
SchI GAGTC 1 cut(s) 381
SduI GDGCHC 2 cut(s) 41, 304
SetI ASST 6 cut(s) 128, 249, 311, 357, 372, 404
SinI GGWCC 1 cut(s) 92
SsiI CCGC 4 cut(s) 204, 211, 220, 258
StyI CCWWGG 1 cut(s) 41
TaaI ACNGT 1 cut(s) 92
TaiI ACGT 1 cut(s) 249
TaqI TCGA 1 cut(s) 87
TfiI GAWTC 3 cut(s) 46, 116, 267
TscAI CASTG 1 cut(s) 286
TspGWI ACGGA 2 cut(s) 109, 156
TspRI CASTG 1 cut(s) 286
VpaK11BI GGWCC 1 cut(s) 92
XceI RCATGY 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.