Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0010505

Physical Location & Seq

Genomic Coordinates Forward (+)

20663733 .. 20665753

Gene Structure 2021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g22520.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGAAGCTTCACGGAGTAACTCGGAAATTCCGAACCTGAACCCTAGCCCGAGAAGAAACCCGATTCCGATTCCGTCTGCATCGCTGAGGTGGCCCACCATAGACGGCCCGCTGGGTCTGTCAGAGGAAGAGTCAGTGAGCTACGCGCGTAGATTTTACAAGTTCGGCTTCGCTCTGCTCCCTTGGCTTTGGGCCCTCAACTGCTTCTACTTCTGGCCCGTCCTCCGCCACTCCCGCTCCTTCCCTCGCATTCACCACTATGTTTTAAGATCAGCAGTTGGATTCACGGTATTTACTGCTCTTCTCTTGTCATGGGCACTTACATTTGCTATTGGAGGGGAGCACCTTTTCGGCCATGTTTGGGATCAACTCGTTATGTACAATCTCGCTGACAGACTTGGCTTGACAGGTTGGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005798 GO:0005886 GO:0016020 GO:0031410 GO:0031982 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0070765 GO:0071944 GO:0097708 GO:0098796 GO:0098797

KEGG Pathways

Metabolic & Signaling

ko04330 ko05010 map04330 map05010

Pfam Domains

Protein Families

PEN-2

Protein Analysis

140

Amino Acids

15.98

Weight (kDa)

9.42

Isoelectric Point (pI)

70.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09310
fragaria_vesca	FvH4_2g08820 FvH4_2g08820 FvH4_2g08820 FvH4_2g08820 FvH4_2g08820 FvH4_3g04510
malus_domestica	MD02G1262600.v1.1 MD07G1057500.v1.1
prunus_persica	Prupe.4G271100_v2.0.a1
pyrus_communis	pycom02g22520
rosa_chinensis	RchiOBHm_Chr6g0264391
rosa_laevigata	RLG00000014257
rosa_multiflora	Rmu_sc0004470.1_g000020
rosa_roxburghii	Rroxscaffold_176G00431770
rosa_rugosa	Rorug06G0012000 Rorug06G0012100
rosa_samantha	Rh6BG129000 Rh6CG127000 Rh6DG114500
rosa_wichuraiana	Rw6G011520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	237
AccII	CGCG	2 cut(s)	146, 148
AciI	CCGC	3 cut(s)	110, 226, 235
AclWI	GGATC	1 cut(s)	372
AcoI	YGGCCR	1 cut(s)	352
AcsI	RAATTY	1 cut(s)	27
AfaI	GTAC	1 cut(s)	380
AfiI	CCNNNNNNNGG	1 cut(s)	361
AluBI	AGCT	3 cut(s)	8, 141, 417
AluI	AGCT	3 cut(s)	8, 141, 417
Alw21I	GWGCWC	1 cut(s)	345
AlwI	GGATC	1 cut(s)	372
Ama87I	CYCGRG	1 cut(s)	49
AoxI	GGCC	5 cut(s)	92, 106, 192, 215, 352
ApaI	GGGCCC	1 cut(s)	196
ApoI	RAATTY	1 cut(s)	27
AspLEI	GCGC	1 cut(s)	148
AspS9I	GGNCC	5 cut(s)	93, 107, 192, 193, 216
AsuHPI	GGTGA	1 cut(s)	245
AvaI	CYCGRG	1 cut(s)	49
BaeGI	GKGCMC	2 cut(s)	196, 319
BanII	GRGCYC	1 cut(s)	196
Bbv12I	GWGCWC	1 cut(s)	345
BbvCI	CCTCAGC	1 cut(s)	86
BceAI	ACGGC	1 cut(s)	121
BfaI	CTAG	1 cut(s)	45
BmeT110I	CYCGRG	1 cut(s)	49
BmgT120I	GGNCC	5 cut(s)	93, 107, 192, 193, 216
BmiI	GGNNCC	1 cut(s)	194
BmsI	GCATC	1 cut(s)	89
Bpu10I	CCTNAGC	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	182
BsaXI	ACNNNNNCTCC	2 cut(s)	221, 251
Bsc4I	CCNNNNNNNGG	1 cut(s)	361
BseDI	CCNNGG	1 cut(s)	182
BseLI	CCNNNNNNNGG	1 cut(s)	361
BseMII	CTCAG	1 cut(s)	77
BseSI	GKGCMC	2 cut(s)	196, 319
BseYI	CCCAGC	1 cut(s)	112
Bsh1236I	CGCG	2 cut(s)	146, 148
BshFI	GGCC	5 cut(s)	94, 108, 194, 217, 354
BsiHKAI	GWGCWC	1 cut(s)	345
BsiHKCI	CYCGRG	1 cut(s)	49
BslI	CCNNNNNNNGG	1 cut(s)	361
BsmI	GAATGC	1 cut(s)	249
BsnI	GGCC	5 cut(s)	94, 108, 194, 217, 354
BsoBI	CYCGRG	1 cut(s)	49
Bsp120I	GGGCCC	1 cut(s)	192
Bsp1286I	GDGCHC	3 cut(s)	196, 319, 345
Bsp1407I	TGTACA	1 cut(s)	378
Bsp143I	GATC	2 cut(s)	269, 364
BspACI	CCGC	3 cut(s)	110, 226, 235
BspANI	GGCC	5 cut(s)	94, 108, 194, 217, 354
BspCNI	CTCAG	1 cut(s)	78
BspFNI	CGCG	2 cut(s)	146, 148
BspLI	GGNNCC	1 cut(s)	194
BspPI	GGATC	1 cut(s)	372
BspQI	GCTCTTC	1 cut(s)	306
BsrBI	CCGCTC	1 cut(s)	237
BsrGI	TGTACA	1 cut(s)	378
BssECI	CCNNGG	1 cut(s)	182
BssMI	GATC	2 cut(s)	269, 364
BssT1I	CCWWGG	1 cut(s)	182
Bst4CI	ACNGT	1 cut(s)	289
Bst6I	CTCTTC	2 cut(s)	123, 306
BstAUI	TGTACA	1 cut(s)	378
BstC8I	GCNNGC	1 cut(s)	110
BstDEI	CTNAG	1 cut(s)	86
BstFNI	CGCG	2 cut(s)	146, 148
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	2 cut(s)	272, 367
BstMBI	GATC	2 cut(s)	269, 364
BstMWI	GCNNNNNNNGC	3 cut(s)	91, 184, 234
BstSLI	GKGCMC	2 cut(s)	196, 319
BstUI	CGCG	2 cut(s)	146, 148
BsuRI	GGCC	5 cut(s)	94, 108, 194, 217, 354
BtgZI	GCGATG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	141
Cac8I	GCNNGC	1 cut(s)	110
CfoI	GCGC	1 cut(s)	148
Cfr13I	GGNCC	5 cut(s)	93, 107, 192, 193, 216
Csp6I	GTAC	1 cut(s)	379
CviAII	CATG	2 cut(s)	312, 356
CviQI	GTAC	1 cut(s)	379
DdeI	CTNAG	1 cut(s)	86
DpnI	GATC	2 cut(s)	271, 366
DpnII	GATC	2 cut(s)	269, 364
EaeI	YGGCCR	1 cut(s)	352
Eam1104I	CTCTTC	2 cut(s)	123, 306
EarI	CTCTTC	2 cut(s)	123, 306
EciI	GGCGGA	1 cut(s)	215
Eco130I	CCWWGG	1 cut(s)	182
Eco24I	GRGCYC	1 cut(s)	196
Eco88I	CYCGRG	1 cut(s)	49
EcoO109I	RGGNCCY	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	182
EcoT38I	GRGCYC	1 cut(s)	196
ErhI	CCWWGG	1 cut(s)	182
FaeI	CATG	2 cut(s)	315, 359
FaiI	YATR	5 cut(s)	101, 261, 313, 357, 377
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
FatI	CATG	2 cut(s)	311, 355
FauI	CCCGC	2 cut(s)	117, 242
FriOI	GRGCYC	1 cut(s)	196
FspBI	CTAG	1 cut(s)	45
GlaI	GCGC	1 cut(s)	147
GsaI	CCCAGC	1 cut(s)	116
HaeIII	GGCC	5 cut(s)	94, 108, 194, 217, 354
HhaI	GCGC	1 cut(s)	148
Hin1II	CATG	2 cut(s)	315, 359
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HindIII	AAGCTT	1 cut(s)	6
HinfI	GANTC	4 cut(s)	64, 70, 131, 282
HphI	GGTGA	1 cut(s)	245
Hpy188I	TCNGA	4 cut(s)	25, 33, 69, 124
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4V	TGCA	1 cut(s)	80
HpyF10VI	GCNNNNNNNGC	3 cut(s)	91, 184, 234
HpyF3I	CTNAG	1 cut(s)	86
Hsp92II	CATG	2 cut(s)	315, 359
HspAI	GCGC	1 cut(s)	146
Kzo9I	GATC	2 cut(s)	269, 364
LguI	GCTCTTC	1 cut(s)	306
LmnI	GCTCC	4 cut(s)	183, 242, 340, 414
LpnPI	CCDG	4 cut(s)	50, 98, 199, 393
LweI	GCATC	1 cut(s)	89
MaeI	CTAG	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	17
MalI	GATC	2 cut(s)	271, 366
MbiI	CCGCTC	1 cut(s)	237
MboI	GATC	2 cut(s)	269, 364
MboII	GAAGA	3 cut(s)	66, 140, 293
MhlI	GDGCHC	3 cut(s)	196, 319, 345
MluCI	AATT	1 cut(s)	27
MlyI	GAGTC	1 cut(s)	140
MmeI	TCCRAC	2 cut(s)	259, 392
MnlI	CCTC	6 cut(s)	81, 118, 206, 233, 255, 329
MseI	TTAA	1 cut(s)	266
MslI	CAYNNNNRTG	1 cut(s)	258
MspA1I	CMGCKG	1 cut(s)	112
Mva1269I	GAATGC	1 cut(s)	249
MvnI	CGCG	2 cut(s)	146, 148
MwoI	GCNNNNNNNGC	3 cut(s)	91, 184, 234
NdeII	GATC	2 cut(s)	269, 364
NlaIII	CATG	2 cut(s)	315, 359
NlaIV	GGNNCC	1 cut(s)	194
PciSI	GCTCTTC	1 cut(s)	306
PcsI	WCGNNNNNNNCGW	1 cut(s)	29
PctI	GAATGC	1 cut(s)	249
PfeI	GAWTC	3 cut(s)	64, 70, 282
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
PspFI	CCCAGC	1 cut(s)	112
PspN4I	GGNNCC	1 cut(s)	194
PspOMI	GGGCCC	1 cut(s)	192
PspPI	GGNCC	5 cut(s)	93, 107, 192, 193, 216
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
RseI	CAYNNNNRTG	1 cut(s)	258
SapI	GCTCTTC	1 cut(s)	306
SaqAI	TTAA	1 cut(s)	266
Sau3AI	GATC	2 cut(s)	269, 364
Sau96I	GGNCC	5 cut(s)	93, 107, 192, 193, 216
SchI	GAGTC	1 cut(s)	140
SduI	GDGCHC	3 cut(s)	196, 319, 345
SetI	ASST	7 cut(s)	10, 39, 92, 143, 348, 412, 419
SfaNI	GCATC	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	258
Sse9I	AATT	1 cut(s)	27
SsiI	CCGC	3 cut(s)	110, 226, 235
SspMI	CTAG	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	182
TaaI	ACNGT	1 cut(s)	289
TasI	AATT	1 cut(s)	27
TatI	WGTACW	1 cut(s)	378
TfiI	GAWTC	3 cut(s)	64, 70, 282
Tru1I	TTAA	1 cut(s)	266
Tru9I	TTAA	1 cut(s)	266
TscAI	CASTG	1 cut(s)	141
TspGWI	ACGGA	2 cut(s)	28, 63
TspRI	CASTG	1 cut(s)	141
XapI	RAATTY	1 cut(s)	27
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.