Rw6G011520

amyloid-beta formation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0010505
Physical Location & Seq
Forward (+)
20239706 .. 20241886
2181 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G011520.1

Sequence Viewer

Length: 375 bp
ATGCAGCTCTTGCTCTCATTTCTAACGCTCTACCCGTCGTCGTTTGGGGTTTCGTTCCAAGATGGAAGCCACCGATATCCAAAACCCAACCCTACCCCAAGGATTCTCCTCCCGTCGTCTCCACCCCCTCTGTGGCCCACCATCGACGGTCCACTGGGCTTGTCAGAGGAAGAATCGGTCAGCTACGCCCGTCGGTTCTACAAGTTCGGGTTCGCTCTGCTTCCATCCGCCGTTGGATTCGCCGTGTTCACTGCTCTGCTCTCGTCCTGGGCCCTCACCTTTGGGATTGGAGGAGAGCGTCTGTTCGGGCATGTCTGGGATGAACTGCTCATGTATAACCTTGCTGACAGAATTGGACTCACTGGTTGGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001667 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005794 GO:0005798 GO:0005886 GO:0005887 GO:0006508 GO:0006509 GO:0006518 GO:0006807 GO:0006928 GO:0007154 GO:0007165 GO:0007166 GO:0007219 GO:0007220 GO:0007275 GO:0007276 GO:0007281 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009792 GO:0009987 GO:0010467 GO:0010631 GO:0010941 GO:0012505 GO:0016020 GO:0016021 GO:0016477 GO:0016485 GO:0019538 GO:0019953 GO:0022412 GO:0022414 GO:0023052 GO:0030154 GO:0031224 GO:0031226 GO:0031293 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033619 GO:0034205 GO:0034641 GO:0035295 GO:0035333 GO:0040011 GO:0042981 GO:0042982 GO:0042987 GO:0043066 GO:0043067 GO:0043069 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043473 GO:0043523 GO:0043524 GO:0043603 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044703 GO:0045165 GO:0048066 GO:0048468 GO:0048519 GO:0048523 GO:0048565 GO:0048598 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0048870 GO:0050435 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051604 GO:0051674 GO:0051704 GO:0051716 GO:0055037 GO:0055123 GO:0060465 GO:0060548 GO:0065007 GO:0065009 GO:0070765 GO:0071704 GO:0071944 GO:0090130 GO:0090132 GO:0097324 GO:0097708 GO:0098796 GO:0098797 GO:1901214 GO:1901215 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko00195 ko01100 ko04330 ko05010 map00195 map01100 map04330 map05010
Pfam Domains
Protein Families
PEN-2

Protein Analysis

124

Amino Acids

13.76

Weight (kDa)

6.04

Isoelectric Point (pI)

50.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010505)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09310
fragaria_vesca FvH4_2g08820 FvH4_2g08820 FvH4_2g08820 FvH4_2g08820 FvH4_2g08820 FvH4_3g04510
malus_domestica MD02G1262600.v1.1 MD07G1057500.v1.1
prunus_persica Prupe.4G271100_v2.0.a1
pyrus_communis pycom02g22520
rosa_chinensis RchiOBHm_Chr6g0264391
rosa_laevigata RLG00000014257
rosa_multiflora Rmu_sc0004470.1_g000020
rosa_roxburghii Rroxscaffold_176G00431770
rosa_rugosa Rorug06G0012000 Rorug06G0012100
rosa_samantha Rh6BG129000 Rh6CG127000 Rh6DG114500
rosa_wichuraiana Rw6G011520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 228
AfiI CCNNNNNNNGG 1 cut(s) 132
AjnI CCWGG 1 cut(s) 266
AluBI AGCT 3 cut(s) 7, 183, 372
AluI AGCT 3 cut(s) 7, 183, 372
Alw26I GTCTC 1 cut(s) 123
AoxI GGCC 2 cut(s) 134, 270
ApaI GGGCCC 1 cut(s) 274
ApeKI GCWGC 1 cut(s) 4
AspS9I GGNCC 4 cut(s) 135, 149, 270, 271
AsuHPI GGTGA 1 cut(s) 268
AvaII GGWCC 1 cut(s) 149
BaeGI GKGCMC 1 cut(s) 274
BanII GRGCYC 1 cut(s) 274
BbvI GCAGC 1 cut(s) 16
BccI CCATC 3 cut(s) 56, 149, 232
BceAI ACGGC 2 cut(s) 215, 227
BciT130I CCWGG 1 cut(s) 268
BcoDI GTCTC 1 cut(s) 123
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
Bme1390I CCNGG 1 cut(s) 268
Bme18I GGWCC 1 cut(s) 149
BmgT120I GGNCC 4 cut(s) 135, 149, 270, 271
BmiI GGNNCC 1 cut(s) 272
BmrFI CCNGG 1 cut(s) 268
BmrI ACTGGG 1 cut(s) 164
BmuI ACTGGG 1 cut(s) 164
BsaJI CCNNGG 2 cut(s) 98, 267
Bsc4I CCNNNNNNNGG 1 cut(s) 132
Bse1I ACTGG 2 cut(s) 159, 367
BseBI CCWGG 1 cut(s) 268
BseDI CCNNGG 2 cut(s) 98, 267
BseGI GGATG 2 cut(s) 224, 325
BseLI CCNNNNNNNGG 1 cut(s) 132
BseNI ACTGG 2 cut(s) 159, 367
BseRI GAGGAG 2 cut(s) 98, 306
BseSI GKGCMC 1 cut(s) 274
BseXI GCAGC 1 cut(s) 16
BshFI GGCC 2 cut(s) 136, 272
BslI CCNNNNNNNGG 1 cut(s) 132
BsmAI GTCTC 1 cut(s) 123
BsmBI CGTCTC 1 cut(s) 123
BsnI GGCC 2 cut(s) 136, 272
Bsp120I GGGCCC 1 cut(s) 270
Bsp1286I GDGCHC 1 cut(s) 274
BspACI CCGC 1 cut(s) 228
BspANI GGCC 2 cut(s) 136, 272
BspLI GGNNCC 1 cut(s) 272
BsrI ACTGG 2 cut(s) 159, 367
BssECI CCNNGG 2 cut(s) 98, 267
BssT1I CCWWGG 1 cut(s) 98
Bst2UI CCWGG 1 cut(s) 268
Bst4CI ACNGT 1 cut(s) 149
BstAPI GCANNNNNTGC 1 cut(s) 10
BstF5I GGATG 2 cut(s) 224, 325
BstMAI GTCTC 1 cut(s) 123
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 1 cut(s) 268
BstNSI RCATGY 1 cut(s) 314
BstSCI CCNGG 1 cut(s) 266
BstSLI GKGCMC 1 cut(s) 274
BstV1I GCAGC 1 cut(s) 16
BsuRI GGCC 2 cut(s) 136, 272
BtsCI GGATG 2 cut(s) 224, 325
BtsI GCAGTG 1 cut(s) 249
BtsIMutI CAGTG 3 cut(s) 152, 249, 360
Cfr13I GGNCC 4 cut(s) 135, 149, 270, 271
CseI GACGC 1 cut(s) 287
CspCI CAANNNNNGTGG 2 cut(s) 141, 176
CviAII CATG 2 cut(s) 311, 331
CviJI RGCY 7 cut(s) 7, 69, 136, 159, 183, 272, 372
CviKI_1 RGCY 7 cut(s) 7, 69, 136, 159, 183, 272, 372
EciI GGCGGA 1 cut(s) 217
Eco130I CCWWGG 1 cut(s) 98
Eco24I GRGCYC 1 cut(s) 274
Eco32I GATATC 1 cut(s) 77
Eco47I GGWCC 1 cut(s) 149
EcoO109I RGGNCCY 1 cut(s) 271
EcoRII CCWGG 1 cut(s) 266
EcoRV GATATC 1 cut(s) 77
EcoT14I CCWWGG 1 cut(s) 98
EcoT38I GRGCYC 1 cut(s) 274
ErhI CCWWGG 1 cut(s) 98
Esp3I CGTCTC 1 cut(s) 123
FaeI CATG 2 cut(s) 314, 334
FaiI YATR 3 cut(s) 312, 332, 336
FatI CATG 2 cut(s) 310, 330
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 2 cut(s) 211, 332
FriOI GRGCYC 1 cut(s) 274
Fsp4HI GCNGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 5
HaeIII GGCC 2 cut(s) 136, 272
HgaI GACGC 1 cut(s) 287
Hin1II CATG 2 cut(s) 314, 334
HinfI GANTC 4 cut(s) 103, 173, 237, 357
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 2 cut(s) 152, 249
Hpy188I TCNGA 1 cut(s) 166
Hpy8I GTNNAC 2 cut(s) 152, 249
Hpy99I CGWCG 5 cut(s) 40, 43, 118, 149, 195
HpyCH4III ACNGT 1 cut(s) 149
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
Hsp92II CATG 2 cut(s) 314, 334
LmnI GCTCC 1 cut(s) 369
LpnPI CCDG 5 cut(s) 140, 253, 280, 301, 348
Lsp1109I GCAGC 1 cut(s) 16
MboII GAAGA 1 cut(s) 182
MhlI GDGCHC 1 cut(s) 274
MluCI AATT 1 cut(s) 351
MlyI GAGTC 1 cut(s) 351
MmeI TCCRAC 2 cut(s) 214, 347
MnlI CCTC 5 cut(s) 119, 138, 160, 284, 284
MspR9I CCNGG 1 cut(s) 268
MvaI CCWGG 1 cut(s) 268
MwoI GCNNNNNNNGC 1 cut(s) 10
NlaIII CATG 2 cut(s) 314, 334
NlaIV GGNNCC 1 cut(s) 272
NspI RCATGY 1 cut(s) 314
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PfeI GAWTC 3 cut(s) 103, 173, 237
PkrI GCNGC 1 cut(s) 6
PleI GAGTC 1 cut(s) 351
PpsI GAGTC 1 cut(s) 351
Psp6I CCWGG 1 cut(s) 266
PspGI CCWGG 1 cut(s) 266
PspN4I GGNNCC 1 cut(s) 272
PspOMI GGGCCC 1 cut(s) 270
PspPI GGNCC 4 cut(s) 135, 149, 270, 271
SatI GCNGC 1 cut(s) 5
Sau96I GGNCC 4 cut(s) 135, 149, 270, 271
SchI GAGTC 1 cut(s) 351
ScrFI CCNGG 1 cut(s) 268
SduI GDGCHC 1 cut(s) 274
SetI ASST 5 cut(s) 9, 185, 281, 342, 374
SinI GGWCC 1 cut(s) 149
Sse9I AATT 1 cut(s) 351
SsiI CCGC 1 cut(s) 228
StyD4I CCNGG 1 cut(s) 266
StyI CCWWGG 1 cut(s) 98
TaaI ACNGT 1 cut(s) 149
TaqI TCGA 1 cut(s) 144
TaqII GACCGA 1 cut(s) 166
TasI AATT 1 cut(s) 351
TfiI GAWTC 3 cut(s) 103, 173, 237
TscAI CASTG 3 cut(s) 159, 256, 367
TseI GCWGC 1 cut(s) 4
TspDTI ATGAA 1 cut(s) 336
TspRI CASTG 3 cut(s) 159, 256, 367
VpaK11BI GGWCC 1 cut(s) 149
XceI RCATGY 1 cut(s) 314
XcmI CCANNNNNNNNNTGG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.