Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012981

Physical Location & Seq

Genomic Coordinates Reverse (-)

2888659 .. 2889953

Gene Structure 1295 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G09315.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGAAGGGATTGGACTGCGAAGTTGCGGAGATGATATTCTCCGTCTCGGATTCAAGCTACGCGGTGGTACCGGTGGCCGGATTCAGATTCTCCAGCGAGCTATGGTGATAAAAATGAGAGACCGTAGCAAGAACAGGAAACCATTGCAGAGAGGACGAATGCTCAGTATCGAAGCGATTCAAGCGGTTCAAGCCCTGAAGCGAGCCAATCCACTTCTTCCTCCTCCTCCCGTTCCTTCTACTTCCACGACTTCTTCTTCCTCAGCTCTGCTTGATCGTGTAATCATTTCTAAATTCCGTCGGCTCTTGAAATTCGATATGGTCGCCGTTCTCAGAGAACTTCTACGCCAAAACGAGTGCTCTCTAGCTCTCAAGGTTTTTGAAGAGATTAGAAAGGAGTATTGGTACAAGCCTCAGGTGAGAATGTACACAGATATGATCACTGTAATGGCGGATAATAGTTTGATGGAAGAGGTCAATTATCTTTACTCAGCTATGAAATCAGAAAAGGGTTTAATGGCTGAGATTGAATGGTTCAACACTCTCTTGACGATTCTCTTGAATCATAAGCTTTTTGATCTTGTCATGGATTGCTATGCCTTTATGCAATCTATTGGCTATGAGCCTGATAGAGCCTCCTTTAGGGTTTTAGTCTTAGGTCTTGAATCAAATGGTGAAATGGGTTTATCAGCTATTGTTAGGCAAGATGCTCATGAGTATTATGGTGAATCACTCGAGTTTATCGAAGAAGATGAAGAAATCTCTAGTGGGACTAGTGTGTTGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0003006 GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0007049 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016020 GO:0016043 GO:0017016 GO:0017048 GO:0019899 GO:0022402 GO:0022414 GO:0022607 GO:0022622 GO:0031267 GO:0032501 GO:0032502 GO:0032506 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048364 GO:0048528 GO:0048608 GO:0048731 GO:0048856 GO:0051020 GO:0051301 GO:0061458 GO:0061640 GO:0065007 GO:0065009 GO:0071554 GO:0071840 GO:0090696 GO:0098772 GO:0099402 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VPS9

Protein Analysis

262

Amino Acids

29.89

Weight (kDa)

6.77

Isoelectric Point (pI)

51.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09315
fragaria_vesca	FvH4_2g17040
malus_domestica	MD10G1143100.v1.1
prunus_persica	Prupe.8G182100_v2.0.a1 Prupe.8G182100_v2.0.a1
pyrus_communis	pycom05g13780 pycom10g12300
rosa_chinensis	RchiOBHm_Chr6g0281221
rosa_laevigata	RLG00000012983
rosa_multiflora	Rmu_sc0000847.1_g000051 Rmu_sc0027531.1_g000002
rosa_roxburghii	Rroxscaffold_7G00187210
rosa_rugosa	Rorug06G0139800
rosa_samantha	Rh6AG251700 Rh6BG255000 Rh6CG254500 Rh6DG246300
rosa_wichuraiana	Rw6G021860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	68
AccB1I	GGYRCC	1 cut(s)	68
AccII	CGCG	1 cut(s)	63
AciI	CCGC	4 cut(s)	27, 63, 185, 452
AcoI	YGGCCR	1 cut(s)	76
AcsI	RAATTY	2 cut(s)	293, 311
AcuI	CTGAAG	1 cut(s)	218
AfaI	GTAC	3 cut(s)	70, 407, 428
AfiI	CCNNNNNNNGG	2 cut(s)	78, 642
AgeI	ACCGGT	1 cut(s)	71
AgsI	TTSAA	9 cut(s)	55, 182, 191, 310, 383, 530, 538, 562, 665
AhlI	ACTAGT	1 cut(s)	773
AjuI	GAANNNNNNNTTGG	2 cut(s)	385, 417
AluBI	AGCT	7 cut(s)	58, 101, 266, 368, 494, 571, 692
AluI	AGCT	7 cut(s)	58, 101, 266, 368, 494, 571, 692
Alw21I	GWGCWC	1 cut(s)	362
Alw26I	GTCTC	2 cut(s)	50, 114
Ama87I	CYCGRG	1 cut(s)	734
AoxI	GGCC	1 cut(s)	76
ApoI	RAATTY	2 cut(s)	293, 311
AsiGI	ACCGGT	1 cut(s)	71
Asp700I	GAANNNNTTC	1 cut(s)	177
Asp718I	GGTACC	1 cut(s)	68
AsuHPI	GGTGA	4 cut(s)	118, 430, 686, 737
AvaI	CYCGRG	1 cut(s)	734
AxyI	CCTNAGG	1 cut(s)	414
BanI	GGYRCC	1 cut(s)	68
Bbv12I	GWGCWC	1 cut(s)	362
BbvCI	CCTCAGC	1 cut(s)	262
BccI	CCATC	1 cut(s)	460
BceAI	ACGGC	1 cut(s)	311
BclI	TGATCA	1 cut(s)	438
BcoDI	GTCTC	2 cut(s)	50, 114
BcuI	ACTAGT	1 cut(s)	773
BfaI	CTAG	3 cut(s)	365, 765, 774
BmeT110I	CYCGRG	1 cut(s)	734
BmiI	GGNNCC	1 cut(s)	70
BmsI	GCATC	1 cut(s)	697
BpmI	CTGGAG	1 cut(s)	77
Bpu10I	CCTNAGC	1 cut(s)	262
BpuEI	CTTGAG	1 cut(s)	356
BsaI	GGTCTC	1 cut(s)	114
BsaWI	WCCGGW	1 cut(s)	71
BsaXI	ACNNNNNCTCC	2 cut(s)	389, 419
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 642
Bse118I	RCCGGY	1 cut(s)	71
Bse21I	CCTNAGG	1 cut(s)	414
Bse3DI	GCAATG	1 cut(s)	143
BseLI	CCNNNNNNNGG	2 cut(s)	78, 642
BseMI	GCAATG	1 cut(s)	143
BseMII	CTCAG	6 cut(s)	178, 276, 346, 428, 504, 513
BseRI	GAGGAG	2 cut(s)	213, 216
Bsh1236I	CGCG	1 cut(s)	63
BshFI	GGCC	1 cut(s)	78
BshNI	GGYRCC	1 cut(s)	68
BshTI	ACCGGT	1 cut(s)	71
BsiHKAI	GWGCWC	1 cut(s)	362
BsiHKCI	CYCGRG	1 cut(s)	734
BsiSI	CCGG	2 cut(s)	72, 79
BslFI	GGGAC	1 cut(s)	784
BslI	CCNNNNNNNGG	2 cut(s)	78, 642
BsmAI	GTCTC	2 cut(s)	50, 114
BsmBI	CGTCTC	1 cut(s)	50
BsmFI	GGGAC	1 cut(s)	784
BsmI	GAATGC	1 cut(s)	165
BsnI	GGCC	1 cut(s)	78
Bso31I	GGTCTC	1 cut(s)	114
BsoBI	CYCGRG	1 cut(s)	734
Bsp1286I	GDGCHC	1 cut(s)	362
Bsp1407I	TGTACA	1 cut(s)	426
Bsp143I	GATC	4 cut(s)	274, 438, 577, 783
BspACI	CCGC	4 cut(s)	27, 63, 185, 452
BspANI	GGCC	1 cut(s)	78
BspCNI	CTCAG	6 cut(s)	177, 275, 345, 427, 503, 514
BspFNI	CGCG	1 cut(s)	63
BspHI	TCATGA	1 cut(s)	712
BspLI	GGNNCC	1 cut(s)	70
BspT107I	GGYRCC	1 cut(s)	68
BspTNI	GGTCTC	1 cut(s)	114
BsrDI	GCAATG	1 cut(s)	143
BsrFI	RCCGGY	1 cut(s)	71
BsrGI	TGTACA	1 cut(s)	426
BssAI	RCCGGY	1 cut(s)	71
BssMI	GATC	4 cut(s)	274, 438, 577, 783
Bst4CI	ACNGT	2 cut(s)	125, 445
Bst6I	CTCTTC	2 cut(s)	378, 465
BstAUI	TGTACA	1 cut(s)	426
BstC8I	GCNNGC	2 cut(s)	99, 204
BstDEI	CTNAG	7 cut(s)	164, 262, 332, 414, 490, 522, 655
BstENI	CCTNNNNNAGG	1 cut(s)	640
BstFNI	CGCG	1 cut(s)	63
BstKTI	GATC	4 cut(s)	277, 441, 580, 786
BstMAI	GTCTC	2 cut(s)	50, 114
BstMBI	GATC	4 cut(s)	274, 438, 577, 783
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 191
BstUI	CGCG	1 cut(s)	63
Bsu36I	CCTNAGG	1 cut(s)	414
BsuRI	GGCC	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	441
Cac8I	GCNNGC	2 cut(s)	99, 204
CciI	TCATGA	1 cut(s)	712
Cfr10I	RCCGGY	1 cut(s)	71
Csp6I	GTAC	3 cut(s)	69, 406, 427
CspAI	ACCGGT	1 cut(s)	71
CviAII	CATG	2 cut(s)	586, 713
CviQI	GTAC	3 cut(s)	69, 406, 427
DdeI	CTNAG	7 cut(s)	164, 262, 332, 414, 490, 522, 655
DpnI	GATC	4 cut(s)	276, 440, 579, 785
DpnII	GATC	4 cut(s)	274, 438, 577, 783
EaeI	YGGCCR	1 cut(s)	76
Eam1104I	CTCTTC	2 cut(s)	378, 465
EarI	CTCTTC	2 cut(s)	378, 465
EciI	GGCGGA	1 cut(s)	467
Eco31I	GGTCTC	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	218
Eco81I	CCTNAGG	1 cut(s)	414
Eco88I	CYCGRG	1 cut(s)	734
EcoNI	CCTNNNNNAGG	1 cut(s)	640
Esp3I	CGTCTC	1 cut(s)	50
FaeI	CATG	2 cut(s)	589, 716
FaqI	GGGAC	1 cut(s)	784
FatI	CATG	2 cut(s)	585, 712
FbaI	TGATCA	1 cut(s)	438
FspBI	CTAG	3 cut(s)	365, 765, 774
GsuI	CTGGAG	1 cut(s)	77
HaeIII	GGCC	1 cut(s)	78
HapII	CCGG	2 cut(s)	72, 79
Hin1II	CATG	2 cut(s)	589, 716
HindIII	AAGCTT	1 cut(s)	569
HinfI	GANTC	8 cut(s)	51, 82, 88, 178, 553, 562, 665, 728
HpaII	CCGG	2 cut(s)	72, 79
HphI	GGTGA	4 cut(s)	118, 430, 686, 737
Hpy166II	GTNNAC	1 cut(s)	429
Hpy188I	TCNGA	4 cut(s)	50, 87, 335, 505
Hpy188III	TCNNGA	5 cut(s)	307, 547, 559, 662, 713
Hpy8I	GTNNAC	1 cut(s)	429
Hpy99I	CGWCG	1 cut(s)	303
HpyAV	CCTTC	1 cut(s)	246
HpyCH4III	ACNGT	2 cut(s)	125, 445
HpyCH4V	TGCA	2 cut(s)	148, 607
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 191
HpyF3I	CTNAG	7 cut(s)	164, 262, 332, 414, 490, 522, 655
Hsp92II	CATG	2 cut(s)	589, 716
KpnI	GGTACC	1 cut(s)	72
Ksp22I	TGATCA	1 cut(s)	438
Kzo9I	GATC	4 cut(s)	274, 438, 577, 783
LpnPI	CCDG	7 cut(s)	85, 92, 107, 121, 209, 401, 639
LweI	GCATC	1 cut(s)	697
MaeI	CTAG	3 cut(s)	365, 765, 774
MalI	GATC	4 cut(s)	276, 440, 579, 785
MboI	GATC	4 cut(s)	274, 438, 577, 783
MboII	GAAGA	8 cut(s)	209, 246, 249, 395, 482, 758, 761, 767
MhlI	GDGCHC	1 cut(s)	362
MluCI	AATT	3 cut(s)	293, 311, 478
MnlI	CCTC	8 cut(s)	146, 231, 234, 237, 271, 423, 466, 646
MroXI	GAANNNNTTC	1 cut(s)	177
MseI	TTAA	1 cut(s)	515
MslI	CAYNNNNRTG	2 cut(s)	434, 446
MspI	CCGG	2 cut(s)	72, 79
Mva1269I	GAATGC	1 cut(s)	165
MvnI	CGCG	1 cut(s)	63
MwoI	GCNNNNNNNGC	2 cut(s)	182, 191
NdeII	GATC	4 cut(s)	274, 438, 577, 783
NlaIII	CATG	2 cut(s)	589, 716
NlaIV	GGNNCC	1 cut(s)	70
PaeR7I	CTCGAG	1 cut(s)	734
PagI	TCATGA	1 cut(s)	712
PcsI	WCGNNNNNNNCGW	1 cut(s)	741
PctI	GAATGC	1 cut(s)	165
PdmI	GAANNNNTTC	1 cut(s)	177
PfeI	GAWTC	8 cut(s)	51, 82, 88, 178, 553, 562, 665, 728
PinAI	ACCGGT	1 cut(s)	71
PspN4I	GGNNCC	1 cut(s)	70
PspXI	VCTCGAGB	1 cut(s)	734
RsaI	GTAC	3 cut(s)	70, 407, 428
RsaNI	GTAC	3 cut(s)	69, 406, 427
RseI	CAYNNNNRTG	2 cut(s)	434, 446
SaqAI	TTAA	1 cut(s)	515
Sau3AI	GATC	4 cut(s)	274, 438, 577, 783
SduI	GDGCHC	1 cut(s)	362
SfaNI	GCATC	1 cut(s)	697
Sfr274I	CTCGAG	1 cut(s)	734
SlaI	CTCGAG	1 cut(s)	734
SmiMI	CAYNNNNRTG	2 cut(s)	434, 446
SmlI	CTYRAG	2 cut(s)	371, 734
SmoI	CTYRAG	2 cut(s)	371, 734
SpeI	ACTAGT	1 cut(s)	773
Sse9I	AATT	3 cut(s)	293, 311, 478
SsiI	CCGC	4 cut(s)	27, 63, 185, 452
SspMI	CTAG	3 cut(s)	365, 765, 774
TaaI	ACNGT	2 cut(s)	125, 445
TaqI	TCGA	4 cut(s)	171, 315, 735, 744
TasI	AATT	3 cut(s)	293, 311, 478
TatI	WGTACW	1 cut(s)	426
TfiI	GAWTC	8 cut(s)	51, 82, 88, 178, 553, 562, 665, 728
Tru1I	TTAA	1 cut(s)	515
Tru9I	TTAA	1 cut(s)	515
TscAI	CASTG	1 cut(s)	448
TspDTI	ATGAA	2 cut(s)	512, 768
TspGWI	ACGGA	2 cut(s)	32, 287
TspRI	CASTG	1 cut(s)	448
XagI	CCTNNNNNAGG	1 cut(s)	640
XapI	RAATTY	2 cut(s)	293, 311
XhoI	CTCGAG	1 cut(s)	734
XmnI	GAANNNNTTC	1 cut(s)	177
XspI	CTAG	3 cut(s)	365, 765, 774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.