RLG00000012983

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0012981
Physical Location & Seq
Forward (+)
24618971 .. 24620051
1081 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012983

Sequence Viewer

Length: 753 bp
ATGAGACCCTCTTCCGCACGTCAAACTGTCACCATCTTCAGCTCTCTACCCAAAACCTTCATAGGCTTTAATGCACAGCCACACTCTCAGTATCTGCAACTTTCAAAACCCAAGAGATGTTTACTGATAATAACAATGAGAGACAGAAGCAAGAACCCGAGGCCTTTGCAGAAGGGAAGGAATCTCAGCATCGAGGCCATTCAGACCATTCAAGCCTTGAAGAGAGCCAAGAAAAACGAGGGTCTTATGGAGCAAGTCTTCAATTCTAAGTTCAGGCGCTTATTGAAGCTTGACATGATGGCCGTACTCAAAGACCTCCTCCGCCAAAATGAATGCTTCTTGGCCCTCAAGGTCTTTGAAGACATTAGAAAGGAGTACTGGTATAAGCCACAGGTTTTGCTTTATGCTGACATGATCAAGGTAATGGCTAGCAATGAATTGTTTGAACAAGTCGAACTTCTTTGCTTGTGCTTGAAAAAAGAAACTAATGTACAGCCCGACATTGAGGGTTTTAACGCTCTGTTGACAGCATTATTACGTTTTAACCTCCCTAAACTTGCTATGGAGTGCTATTACTTGATGAAAGGGGTTGGGTGTGAACCAGATAGGTCATCATTTAGAATACTTATTAAAGGTCTAGAATCAGTGGGAGAGACAGGTCTCTTAGGTATTGTAAGGCAGGATGCTCAAAAGTTGTATGGCGAGTCTCTGGAGTTTCTAGAGGAAAATGAAGAAATGGCAGCAAGTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR_2 PPR_3

Protein Analysis

251

Amino Acids

28.82

Weight (kDa)

9.15

Isoelectric Point (pI)

43.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 161 - 211 1e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 166 - 213 1.4e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012981)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09315
fragaria_vesca FvH4_2g17040
malus_domestica MD10G1143100.v1.1
prunus_persica Prupe.8G182100_v2.0.a1 Prupe.8G182100_v2.0.a1
pyrus_communis pycom05g13780 pycom10g12300
rosa_chinensis RchiOBHm_Chr6g0281221
rosa_laevigata RLG00000012983
rosa_multiflora Rmu_sc0000847.1_g000051 Rmu_sc0027531.1_g000002
rosa_roxburghii Rroxscaffold_7G00187210
rosa_rugosa Rorug06G0139800
rosa_samantha Rh6AG251700 Rh6BG255000 Rh6CG254500 Rh6DG246300
rosa_wichuraiana Rw6G021860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 15, 322
AcoI YGGCCR 1 cut(s) 300
AcuI CTGAAG 1 cut(s) 22
AfaI GTAC 3 cut(s) 306, 377, 492
AgsI TTSAA 8 cut(s) 105, 212, 220, 262, 286, 359, 446, 475
AjiI CACGTC 1 cut(s) 20
AluBI AGCT 2 cut(s) 42, 289
AluI AGCT 2 cut(s) 42, 289
Alw26I GTCTC 4 cut(s) 135, 647, 665, 711
AlwNI CAGNNNCTG 1 cut(s) 94
Ama87I CYCGRG 1 cut(s) 157
AoxI GGCC 4 cut(s) 161, 195, 300, 342
ApeKI GCWGC 1 cut(s) 740
AspLEI GCGC 1 cut(s) 279
AspS9I GGNCC 1 cut(s) 343
AsuHPI GGTGA 1 cut(s) 22
AsuNHI GCTAGC 1 cut(s) 428
AvaI CYCGRG 1 cut(s) 157
BbsI GAAGAC 2 cut(s) 250, 366
BccI CCATC 2 cut(s) 41, 292
BceAI ACGGC 1 cut(s) 287
BcgI CGANNNNNNTGC 2 cut(s) 148, 182
BclI TGATCA 1 cut(s) 414
BcoDI GTCTC 4 cut(s) 135, 647, 665, 711
BfaI CTAG 3 cut(s) 429, 638, 719
BfoI RGCGCY 1 cut(s) 280
BisI GCNGC 1 cut(s) 741
BlsI GCNGC 1 cut(s) 742
BmcAI AGTACT 1 cut(s) 377
BmeT110I CYCGRG 1 cut(s) 157
BmgBI CACGTC 1 cut(s) 20
BmgT120I GGNCC 1 cut(s) 343
BmsI GCATC 2 cut(s) 198, 673
BmtI GCTAGC 1 cut(s) 432
BpiI GAAGAC 2 cut(s) 250, 366
BpmI CTGGAG 1 cut(s) 731
BpuEI CTTGAG 1 cut(s) 332
BsaI GGTCTC 1 cut(s) 665
BsaJI CCNNGG 1 cut(s) 158
BsaXI ACNNNNNCTCC 2 cut(s) 365, 395
Bse1I ACTGG 1 cut(s) 383
Bse3DI GCAATG 1 cut(s) 439
BseDI CCNNGG 1 cut(s) 158
BseGI GGATG 1 cut(s) 688
BseMI GCAATG 1 cut(s) 439
BseMII CTCAG 2 cut(s) 101, 199
BseNI ACTGG 1 cut(s) 383
BseRI GAGGAG 1 cut(s) 308
BshFI GGCC 4 cut(s) 163, 197, 302, 344
BsiHKCI CYCGRG 1 cut(s) 157
BsmAI GTCTC 4 cut(s) 135, 647, 665, 711
BsmI GAATGC 1 cut(s) 338
BsnI GGCC 4 cut(s) 163, 197, 302, 344
Bso31I GGTCTC 1 cut(s) 665
BsoBI CYCGRG 1 cut(s) 157
Bsp1407I TGTACA 1 cut(s) 490
Bsp143I GATC 1 cut(s) 414
BspACI CCGC 2 cut(s) 15, 322
BspANI GGCC 4 cut(s) 163, 197, 302, 344
BspCNI CTCAG 2 cut(s) 100, 198
BspOI GCTAGC 1 cut(s) 432
BspTNI GGTCTC 1 cut(s) 665
BsrDI GCAATG 1 cut(s) 439
BsrGI TGTACA 1 cut(s) 490
BsrI ACTGG 1 cut(s) 383
BssECI CCNNGG 1 cut(s) 158
BssMI GATC 1 cut(s) 414
Bst4CI ACNGT 1 cut(s) 28
Bst6I CTCTTC 2 cut(s) 16, 215
BstAUI TGTACA 1 cut(s) 490
BstC8I GCNNGC 1 cut(s) 430
BstDEI CTNAG 4 cut(s) 87, 185, 267, 664
BstF5I GGATG 1 cut(s) 688
BstH2I RGCGCY 1 cut(s) 280
BstHHI GCGC 1 cut(s) 279
BstKTI GATC 1 cut(s) 417
BstMAI GTCTC 4 cut(s) 135, 647, 665, 711
BstMBI GATC 1 cut(s) 414
BstV2I GAAGAC 2 cut(s) 250, 366
BsuRI GGCC 4 cut(s) 163, 197, 302, 344
BtrI CACGTC 1 cut(s) 20
BtsCI GGATG 1 cut(s) 688
BtsIMutI CAGTG 1 cut(s) 651
Cac8I GCNNGC 1 cut(s) 430
CaiI CAGNNNCTG 1 cut(s) 94
CfoI GCGC 1 cut(s) 279
Cfr13I GGNCC 1 cut(s) 343
Csp6I GTAC 3 cut(s) 305, 376, 491
CspCI CAANNNNNGTGG 2 cut(s) 378, 413
CviAII CATG 2 cut(s) 295, 412
CviQI GTAC 3 cut(s) 305, 376, 491
DdeI CTNAG 4 cut(s) 87, 185, 267, 664
DpnI GATC 1 cut(s) 416
DpnII GATC 1 cut(s) 414
EaeI YGGCCR 1 cut(s) 300
Eam1104I CTCTTC 2 cut(s) 16, 215
EarI CTCTTC 2 cut(s) 16, 215
EciI GGCGGA 1 cut(s) 311
Eco147I AGGCCT 1 cut(s) 163
Eco31I GGTCTC 1 cut(s) 665
Eco57I CTGAAG 1 cut(s) 22
Eco88I CYCGRG 1 cut(s) 157
FaeI CATG 2 cut(s) 298, 415
FaiI YATR 8 cut(s) 62, 248, 296, 384, 405, 413, 563, 699
FalI AAGNNNNNCTT 2 cut(s) 441, 473
FatI CATG 2 cut(s) 294, 411
FbaI TGATCA 1 cut(s) 414
Fnu4HI GCNGC 1 cut(s) 741
FokI GGATG 1 cut(s) 695
Fsp4HI GCNGC 1 cut(s) 741
FspBI CTAG 3 cut(s) 429, 638, 719
GlaI GCGC 1 cut(s) 278
GluI GCNGC 1 cut(s) 741
GsuI CTGGAG 1 cut(s) 731
HaeII RGCGCY 1 cut(s) 280
HaeIII GGCC 4 cut(s) 163, 197, 302, 344
HhaI GCGC 1 cut(s) 279
Hin1II CATG 2 cut(s) 298, 415
Hin6I GCGC 1 cut(s) 277
HinP1I GCGC 1 cut(s) 277
HincII GTYRAC 1 cut(s) 525
HindII GTYRAC 1 cut(s) 525
HindIII AAGCTT 1 cut(s) 287
HinfI GANTC 3 cut(s) 181, 641, 704
HphI GGTGA 1 cut(s) 22
Hpy166II GTNNAC 3 cut(s) 122, 525, 599
Hpy188I TCNGA 1 cut(s) 204
Hpy188III TCNNGA 3 cut(s) 638, 710, 719
Hpy8I GTNNAC 3 cut(s) 122, 525, 599
HpyAV CCTTC 3 cut(s) 67, 166, 171
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4IV ACGT 2 cut(s) 19, 538
HpyCH4V TGCA 3 cut(s) 74, 97, 169
HpyF3I CTNAG 4 cut(s) 87, 185, 267, 664
HpySE526I ACGT 2 cut(s) 19, 538
Hsp92II CATG 2 cut(s) 298, 415
HspAI GCGC 1 cut(s) 277
Ksp22I TGATCA 1 cut(s) 414
Kzo9I GATC 1 cut(s) 414
LmnI GCTCC 1 cut(s) 250
LpnPI CCDG 7 cut(s) 259, 364, 377, 615, 642, 665, 695
LweI GCATC 2 cut(s) 198, 673
MaeI CTAG 3 cut(s) 429, 638, 719
MaeII ACGT 2 cut(s) 19, 538
MaeIII GTNAC 1 cut(s) 28
MalI GATC 1 cut(s) 416
MboI GATC 1 cut(s) 414
MboII GAAGA 6 cut(s) 3, 28, 232, 250, 371, 743
MluCI AATT 2 cut(s) 262, 437
MlyI GAGTC 1 cut(s) 713
MseI TTAA 4 cut(s) 69, 513, 543, 630
Mva1269I GAATGC 1 cut(s) 338
NdeII GATC 1 cut(s) 414
NheI GCTAGC 1 cut(s) 428
NlaIII CATG 2 cut(s) 298, 415
NmuCI GTSAC 1 cut(s) 28
PceI AGGCCT 1 cut(s) 163
PctI GAATGC 1 cut(s) 338
PfeI GAWTC 2 cut(s) 181, 641
PkrI GCNGC 1 cut(s) 742
PleI GAGTC 1 cut(s) 712
PpsI GAGTC 1 cut(s) 712
PspPI GGNCC 1 cut(s) 343
PstNI CAGNNNCTG 1 cut(s) 94
RsaI GTAC 3 cut(s) 306, 377, 492
RsaNI GTAC 3 cut(s) 305, 376, 491
SaqAI TTAA 4 cut(s) 69, 513, 543, 630
SatI GCNGC 1 cut(s) 741
Sau3AI GATC 1 cut(s) 414
Sau96I GGNCC 1 cut(s) 343
ScaI AGTACT 1 cut(s) 377
SchI GAGTC 1 cut(s) 713
SfaNI GCATC 2 cut(s) 198, 673
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
Sse9I AATT 2 cut(s) 262, 437
SseBI AGGCCT 1 cut(s) 163
SsiI CCGC 2 cut(s) 15, 322
SspMI CTAG 3 cut(s) 429, 638, 719
StuI AGGCCT 1 cut(s) 163
TaaI ACNGT 1 cut(s) 28
TaiI ACGT 2 cut(s) 22, 541
TaqI TCGA 2 cut(s) 192, 453
TasI AATT 2 cut(s) 262, 437
TatI WGTACW 2 cut(s) 375, 490
TfiI GAWTC 2 cut(s) 181, 641
Tru1I TTAA 4 cut(s) 69, 513, 543, 630
Tru9I TTAA 4 cut(s) 69, 513, 543, 630
TscAI CASTG 1 cut(s) 651
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 1 cut(s) 740
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 5 cut(s) 49, 345, 450, 596, 744
TspRI CASTG 1 cut(s) 651
XbaI TCTAGA 2 cut(s) 637, 718
XspI CTAG 3 cut(s) 429, 638, 719
ZrmI AGTACT 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.