Prupe.8G182100_v2.0.a1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0012981
Physical Location & Seq
Reverse (-)
18179039 .. 18182277
3239 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G182100.1

Sequence Viewer

Length: 789 bp
ATGAGACCCTCTTCGGCAACTCAAGCTCTCACTCTCTTCAGCTCTCTGCCCAGAAACTTAATCTTCAACGCAGAGCCTCAGCCCTCATCTCTTCAGCTCTCGAGACCCAAAAGATGGAAACTGATAGTGACGATGAGAGACAGAAGCAATAACCCGAGACCATTGCAGAAAGGGAGACACCTCAGCATCGAAGCCATACAGACCGTACAGGCCTTGAAGAGAGCCAAGAAGAACCAGAGCTTTCTTGACCAAGCGTTCGGTTCTAAGTTCAGGCGCTTGCTGAAGCTCGACATGATGGCTGTCCTTCGTGACCTCCTCCGCCAAAATGAGTGCTTCTTGGCCCTCAAGTTTACGCAGACTCCTAATAAATATTTGCCGCTAAATTACATGGTCTTTGAAGATATTCGAAAAGAACACTGGTATAGGCCGCAGGTTTCACTTTATGCTGATATGATTAAAGTAATGGCTAGCAATGAATTGTTTGAACAAGTTGAACTTCTTTGCTTGTGCTTGAAAAAAGAAAGAAATTTACACCCTGAACTTGAGGCTTTTAATGCTCTATTGACAACATTGATAAGTTTTAAAATCCCTAAACTTGCAATGGAGTGCTTTTACTTGATGAAAGAGGTGGGATGTGAACCAGATAGGTCATCCTTTAGAATACTCATTAATGGTCTAGAATCCATGGGAGAGACAGGTCTTTCAGGTATTTTGAGGCAGGATGCTCAAAAGTATTATGGTGAATCTCTGGAGTTTTTAGAGGAGAATGAAGAAATGGCAGTCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR_2 PPR_3

Protein Analysis

263

Amino Acids

30.49

Weight (kDa)

9.24

Isoelectric Point (pI)

51.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012981)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09315
fragaria_vesca FvH4_2g17040
malus_domestica MD10G1143100.v1.1
prunus_persica Prupe.8G182100_v2.0.a1 Prupe.8G182100_v2.0.a1
pyrus_communis pycom05g13780 pycom10g12300
rosa_chinensis RchiOBHm_Chr6g0281221
rosa_laevigata RLG00000012983
rosa_multiflora Rmu_sc0000847.1_g000051 Rmu_sc0027531.1_g000002
rosa_roxburghii Rroxscaffold_7G00187210
rosa_rugosa Rorug06G0139800
rosa_samantha Rh6AG251700 Rh6BG255000 Rh6CG254500 Rh6DG246300
rosa_wichuraiana Rw6G021860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 421
AccB7I CCANNNNNTGG 1 cut(s) 114
AciI CCGC 3 cut(s) 319, 377, 428
AcsI RAATTY 1 cut(s) 526
AcuI CTGAAG 3 cut(s) 22, 77, 302
AfaI GTAC 1 cut(s) 207
AfiI CCNNNNNNNGG 1 cut(s) 114
AgsI TTSAA 6 cut(s) 67, 217, 398, 485, 494, 514
AluBI AGCT 5 cut(s) 26, 42, 97, 240, 286
AluI AGCT 5 cut(s) 26, 42, 97, 240, 286
Alw26I GTCTC 5 cut(s) 97, 132, 151, 169, 686
Ama87I CYCGRG 2 cut(s) 100, 154
AoxI GGCC 3 cut(s) 210, 339, 425
ApoI RAATTY 1 cut(s) 526
ArsI GACNNNNNNTTYG 2 cut(s) 239, 271
AseI ATTAAT 1 cut(s) 669
Asp700I GAANNNNTTC 1 cut(s) 402
AspLEI GCGC 1 cut(s) 276
AspS9I GGNCC 1 cut(s) 340
AsuHPI GGTGA 1 cut(s) 752
AsuII TTCGAA 1 cut(s) 406
AsuNHI GCTAGC 1 cut(s) 467
AvaI CYCGRG 2 cut(s) 100, 154
BbvCI CCTCAGC 2 cut(s) 78, 182
BccI CCATC 2 cut(s) 108, 289
BcgI CGANNNNNNTGC 2 cut(s) 145, 179
BcoDI GTCTC 5 cut(s) 97, 132, 151, 169, 686
BfaI CTAG 2 cut(s) 468, 677
BfoI RGCGCY 1 cut(s) 277
BfuAI ACCTGC 1 cut(s) 421
BisI GCNGC 2 cut(s) 377, 428
BlsI GCNGC 2 cut(s) 378, 429
BmeT110I CYCGRG 2 cut(s) 100, 154
BmgT120I GGNCC 1 cut(s) 340
BmsI GCATC 2 cut(s) 195, 712
BmtI GCTAGC 1 cut(s) 471
BpmI CTGGAG 1 cut(s) 770
Bpu10I CCTNAGC 2 cut(s) 78, 182
Bpu14I TTCGAA 1 cut(s) 406
BpuEI CTTGAG 3 cut(s) 6, 329, 563
BsaI GGTCTC 2 cut(s) 97, 151
BsaJI CCNNGG 1 cut(s) 684
BsaXI ACNNNNNCTCC 2 cut(s) 343, 373
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse1I ACTGG 1 cut(s) 422
Bse3DI GCAATG 3 cut(s) 161, 478, 606
BseDI CCNNGG 1 cut(s) 684
BseGI GGATG 3 cut(s) 638, 650, 727
BseLI CCNNNNNNNGG 1 cut(s) 114
BseMI GCAATG 3 cut(s) 161, 478, 606
BseMII CTCAG 2 cut(s) 92, 196
BseNI ACTGG 1 cut(s) 422
BseRI GAGGAG 2 cut(s) 305, 776
BshFI GGCC 3 cut(s) 212, 341, 427
BsiHKCI CYCGRG 2 cut(s) 100, 154
BslI CCNNNNNNNGG 1 cut(s) 114
BsmAI GTCTC 5 cut(s) 97, 132, 151, 169, 686
BsnI GGCC 3 cut(s) 212, 341, 427
Bso31I GGTCTC 2 cut(s) 97, 151
BsoBI CYCGRG 2 cut(s) 100, 154
Bsp119I TTCGAA 1 cut(s) 406
Bsp19I CCATGG 1 cut(s) 684
BspACI CCGC 3 cut(s) 319, 377, 428
BspANI GGCC 3 cut(s) 212, 341, 427
BspCNI CTCAG 2 cut(s) 91, 195
BspMI ACCTGC 1 cut(s) 421
BspOI GCTAGC 1 cut(s) 471
BspT104I TTCGAA 1 cut(s) 406
BspTNI GGTCTC 2 cut(s) 97, 151
BsrDI GCAATG 3 cut(s) 161, 478, 606
BsrI ACTGG 1 cut(s) 422
BssECI CCNNGG 1 cut(s) 684
BssT1I CCWWGG 1 cut(s) 684
Bst4CI ACNGT 1 cut(s) 205
Bst6I CTCTTC 4 cut(s) 16, 41, 96, 212
BstBI TTCGAA 1 cut(s) 406
BstC8I GCNNGC 2 cut(s) 278, 469
BstDEI CTNAG 3 cut(s) 78, 182, 264
BstDSI CCRYGG 1 cut(s) 684
BstF5I GGATG 3 cut(s) 638, 650, 727
BstH2I RGCGCY 1 cut(s) 277
BstHHI GCGC 1 cut(s) 276
BstMAI GTCTC 5 cut(s) 97, 132, 151, 169, 686
BstMWI GCNNNNNNNGC 2 cut(s) 23, 554
BsuRI GGCC 3 cut(s) 212, 341, 427
BtgI CCRYGG 1 cut(s) 684
BtsCI GGATG 3 cut(s) 638, 650, 727
BtsIMutI CAGTG 1 cut(s) 415
BveI ACCTGC 1 cut(s) 421
Cac8I GCNNGC 2 cut(s) 278, 469
CfoI GCGC 1 cut(s) 276
Cfr13I GGNCC 1 cut(s) 340
Csp6I GTAC 1 cut(s) 206
CviAII CATG 3 cut(s) 292, 388, 685
CviQI GTAC 1 cut(s) 206
DdeI CTNAG 3 cut(s) 78, 182, 264
DraI TTTAAA 1 cut(s) 583
Eam1104I CTCTTC 4 cut(s) 16, 41, 96, 212
EarI CTCTTC 4 cut(s) 16, 41, 96, 212
EciI GGCGGA 1 cut(s) 308
Eco130I CCWWGG 1 cut(s) 684
Eco147I AGGCCT 1 cut(s) 212
Eco31I GGTCTC 2 cut(s) 97, 151
Eco57I CTGAAG 3 cut(s) 22, 77, 302
Eco88I CYCGRG 2 cut(s) 100, 154
EcoT14I CCWWGG 1 cut(s) 684
ErhI CCWWGG 1 cut(s) 684
FaeI CATG 3 cut(s) 295, 391, 688
FaiI YATR 8 cut(s) 197, 293, 389, 423, 444, 452, 686, 738
FalI AAGNNNNNCTT 2 cut(s) 480, 512
FatI CATG 3 cut(s) 291, 387, 684
Fnu4HI GCNGC 2 cut(s) 377, 428
FokI GGATG 3 cut(s) 637, 645, 734
Fsp4HI GCNGC 2 cut(s) 377, 428
FspBI CTAG 2 cut(s) 468, 677
GlaI GCGC 1 cut(s) 275
GluI GCNGC 2 cut(s) 377, 428
GsuI CTGGAG 1 cut(s) 770
HaeII RGCGCY 1 cut(s) 277
HaeIII GGCC 3 cut(s) 212, 341, 427
HhaI GCGC 1 cut(s) 276
Hin1II CATG 3 cut(s) 295, 391, 688
Hin6I GCGC 1 cut(s) 274
HinP1I GCGC 1 cut(s) 274
HinfI GANTC 3 cut(s) 358, 680, 743
HphI GGTGA 1 cut(s) 752
Hpy166II GTNNAC 2 cut(s) 351, 638
Hpy188III TCNNGA 6 cut(s) 100, 102, 245, 308, 677, 749
Hpy8I GTNNAC 2 cut(s) 351, 638
HpyAV CCTTC 1 cut(s) 314
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4V TGCA 2 cut(s) 166, 599
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 554
HpyF3I CTNAG 3 cut(s) 78, 182, 264
Hsp92II CATG 3 cut(s) 295, 391, 688
HspAI GCGC 1 cut(s) 274
LweI GCATC 2 cut(s) 195, 712
MaeI CTAG 2 cut(s) 468, 677
MaeIII GTNAC 2 cut(s) 127, 308
MboII GAAGA 8 cut(s) 3, 28, 55, 83, 229, 241, 410, 782
MluCI AATT 3 cut(s) 382, 476, 526
MlyI GAGTC 1 cut(s) 352
MroXI GAANNNNTTC 1 cut(s) 402
MseI TTAA 5 cut(s) 59, 456, 552, 582, 669
MwoI GCNNNNNNNGC 2 cut(s) 23, 554
NcoI CCATGG 1 cut(s) 684
NheI GCTAGC 1 cut(s) 467
NlaIII CATG 3 cut(s) 295, 391, 688
NmuCI GTSAC 2 cut(s) 127, 308
NspV TTCGAA 1 cut(s) 406
PaeR7I CTCGAG 1 cut(s) 100
PceI AGGCCT 1 cut(s) 212
PdmI GAANNNNTTC 1 cut(s) 402
PfeI GAWTC 2 cut(s) 680, 743
PflMI CCANNNNNTGG 1 cut(s) 114
PkrI GCNGC 2 cut(s) 378, 429
PleI GAGTC 1 cut(s) 352
PpsI GAGTC 1 cut(s) 352
PshBI ATTAAT 1 cut(s) 669
PspPI GGNCC 1 cut(s) 340
RsaI GTAC 1 cut(s) 207
RsaNI GTAC 1 cut(s) 206
SaqAI TTAA 5 cut(s) 59, 456, 552, 582, 669
SatI GCNGC 2 cut(s) 377, 428
Sau96I GGNCC 1 cut(s) 340
SchI GAGTC 1 cut(s) 352
SfaNI GCATC 2 cut(s) 195, 712
Sfr274I CTCGAG 1 cut(s) 100
SfuI TTCGAA 1 cut(s) 406
SlaI CTCGAG 1 cut(s) 100
SmlI CTYRAG 4 cut(s) 21, 100, 344, 542
SmoI CTYRAG 4 cut(s) 21, 100, 344, 542
Sse9I AATT 3 cut(s) 382, 476, 526
SseBI AGGCCT 1 cut(s) 212
SsiI CCGC 3 cut(s) 319, 377, 428
SspI AATATT 1 cut(s) 371
SspMI CTAG 2 cut(s) 468, 677
StuI AGGCCT 1 cut(s) 212
StyI CCWWGG 1 cut(s) 684
TaaI ACNGT 1 cut(s) 205
TaqI TCGA 4 cut(s) 101, 189, 288, 406
TasI AATT 3 cut(s) 382, 476, 526
TauI GCSGC 2 cut(s) 379, 430
TfiI GAWTC 2 cut(s) 680, 743
Tru1I TTAA 5 cut(s) 59, 456, 552, 582, 669
Tru9I TTAA 5 cut(s) 59, 456, 552, 582, 669
TscAI CASTG 1 cut(s) 422
TseFI GTSAC 2 cut(s) 127, 308
Tsp45I GTSAC 2 cut(s) 127, 308
TspDTI ATGAA 3 cut(s) 489, 635, 783
TspRI CASTG 1 cut(s) 422
Van91I CCANNNNNTGG 1 cut(s) 114
VspI ATTAAT 1 cut(s) 669
XapI RAATTY 1 cut(s) 526
XbaI TCTAGA 1 cut(s) 676
XhoI CTCGAG 1 cut(s) 100
XmnI GAANNNNTTC 1 cut(s) 402
XspI CTAG 2 cut(s) 468, 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.