FvH4_2g17040

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0012981
Physical Location & Seq
Reverse (-)
14761671 .. 14762763
1093 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g17040.t1

Sequence Viewer

Length: 750 bp
ATGAGACCTTCCGCACTTCAAACCGTCCCTATATTCAGCTCTCTACCCAAAACCTTCACAAGCTTTGATGCACAGCCTCAGTCGCAATATCTGCAACTTTCTAAACCCAAGAGATGTTCATTGCTAATAACAATGAGAGACAGAAGCAAGAACCCAAGGCCTTTGCAGAAGGGAAGGAATCTCAGCATCGAAGCCATTCAGACCATTCAAGCGTTGAAGAGAGCCCAGAAAAACGAGAGTCTTATGGAGCAAGTCTTCAATTCCAAGTTCAGACGCTTATTGAAGCTCGACATGATGGCCGTACTCAAAGACCTCCTGCGCCAAAATGAGTGCTTCTTGGCCCTCAAGGTTTTTCAAGACATTAGAAAGGAATACTGGTATAAGCCGCAGGTTATGCTTTATGCTGATATGATCAAGGTAATGGCTAACAATGAATTGTTTGAACAAGTCAAACTTCTTTGCTTGTGCTTGAAAAAAGAAGCTAATTTACAGCCTGACATTGAGGGCTTTAACGTTCTATTGACAGCATTAATAAGTTTTAACCTCCCTAATCTTGCAATGGAGTGCTATTACTTGATGAAAGAGGTAGGGTGTGAACCAGATAGGTCATCCTTTAGAGTACTTATAAAAGGTCTAGAGTCGATGGGAGAGACAGGTCCTTTAGGTATTGTAAGGCAGGATGCTCAAAATTTGTATGGTGATTCTCTGGAGTTTCTAGAGGAGAATGAAGAAATGACAGCGAGTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR_2 PPR_3

Protein Analysis

250

Amino Acids

28.75

Weight (kDa)

8.66

Isoelectric Point (pI)

48.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 160 - 210 1.9e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 165 - 212 4.8e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012981)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09315
fragaria_vesca FvH4_2g17040
malus_domestica MD10G1143100.v1.1
prunus_persica Prupe.8G182100_v2.0.a1 Prupe.8G182100_v2.0.a1
pyrus_communis pycom05g13780 pycom10g12300
rosa_chinensis RchiOBHm_Chr6g0281221
rosa_laevigata RLG00000012983
rosa_multiflora Rmu_sc0000847.1_g000051 Rmu_sc0027531.1_g000002
rosa_roxburghii Rroxscaffold_7G00187210
rosa_rugosa Rorug06G0139800
rosa_samantha Rh6AG251700 Rh6BG255000 Rh6CG254500 Rh6DG246300
rosa_wichuraiana Rw6G021860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 626
Acc36I ACCTGC 1 cut(s) 379
AciI CCGC 2 cut(s) 12, 386
AclI AACGTT 1 cut(s) 513
AcoI YGGCCR 1 cut(s) 297
AcsI RAATTY 1 cut(s) 688
AfaI GTAC 2 cut(s) 303, 621
AgsI TTSAA 8 cut(s) 20, 209, 217, 259, 283, 356, 443, 472
AhdI GACNNNNNGTC 1 cut(s) 741
AluBI AGCT 4 cut(s) 39, 63, 286, 482
AluI AGCT 4 cut(s) 39, 63, 286, 482
Alw26I GTCTC 2 cut(s) 132, 644
AoxI GGCC 3 cut(s) 158, 297, 339
ApoI RAATTY 1 cut(s) 688
AseI ATTAAT 1 cut(s) 530
Asp700I GAANNNNTTC 1 cut(s) 195
AspLEI GCGC 1 cut(s) 321
AspS9I GGNCC 2 cut(s) 340, 656
AsuHPI GGTGA 1 cut(s) 710
AvaII GGWCC 1 cut(s) 656
BanII GRGCYC 1 cut(s) 226
BarI GAAGNNNNNNTAC 2 cut(s) 471, 503
BbsI GAAGAC 1 cut(s) 247
BccI CCATC 2 cut(s) 289, 637
BceAI ACGGC 1 cut(s) 284
BclI TGATCA 1 cut(s) 411
BcoDI GTCTC 2 cut(s) 132, 644
BfaI CTAG 2 cut(s) 635, 716
BfuAI ACCTGC 1 cut(s) 379
BisI GCNGC 1 cut(s) 386
BlsI GCNGC 1 cut(s) 387
BmcAI AGTACT 1 cut(s) 621
Bme18I GGWCC 1 cut(s) 656
BmeRI GACNNNNNGTC 1 cut(s) 741
BmgT120I GGNCC 2 cut(s) 340, 656
BmsI GCATC 3 cut(s) 58, 195, 670
BpiI GAAGAC 1 cut(s) 247
BpmI CTGGAG 1 cut(s) 728
BpuEI CTTGAG 1 cut(s) 329
BsaJI CCNNGG 1 cut(s) 155
Bse1I ACTGG 1 cut(s) 380
Bse3DI GCAATG 2 cut(s) 119, 564
BseDI CCNNGG 1 cut(s) 155
BseGI GGATG 2 cut(s) 608, 685
BseMI GCAATG 2 cut(s) 119, 564
BseMII CTCAG 2 cut(s) 92, 196
BseNI ACTGG 1 cut(s) 380
BseRI GAGGAG 1 cut(s) 734
BshFI GGCC 3 cut(s) 160, 299, 341
BslFI GGGAC 1 cut(s) 11
BsmAI GTCTC 2 cut(s) 132, 644
BsmFI GGGAC 1 cut(s) 11
BsnI GGCC 3 cut(s) 160, 299, 341
Bsp1286I GDGCHC 1 cut(s) 226
Bsp143I GATC 1 cut(s) 411
BspACI CCGC 2 cut(s) 12, 386
BspANI GGCC 3 cut(s) 160, 299, 341
BspCNI CTCAG 2 cut(s) 91, 195
BspMI ACCTGC 1 cut(s) 379
BsrDI GCAATG 2 cut(s) 119, 564
BsrI ACTGG 1 cut(s) 380
BssECI CCNNGG 1 cut(s) 155
BssMI GATC 1 cut(s) 411
BssT1I CCWWGG 1 cut(s) 155
Bst4CI ACNGT 1 cut(s) 25
Bst6I CTCTTC 1 cut(s) 212
BstAPI GCANNNNNTGC 2 cut(s) 91, 394
BstDEI CTNAG 2 cut(s) 78, 182
BstF5I GGATG 2 cut(s) 608, 685
BstHHI GCGC 1 cut(s) 321
BstKTI GATC 1 cut(s) 414
BstMAI GTCTC 2 cut(s) 132, 644
BstMBI GATC 1 cut(s) 411
BstMWI GCNNNNNNNGC 3 cut(s) 82, 91, 394
BstV2I GAAGAC 1 cut(s) 247
BsuRI GGCC 3 cut(s) 160, 299, 341
BtsCI GGATG 2 cut(s) 608, 685
BveI ACCTGC 1 cut(s) 379
CfoI GCGC 1 cut(s) 321
Cfr13I GGNCC 2 cut(s) 340, 656
CseI GACGC 1 cut(s) 282
Csp6I GTAC 2 cut(s) 302, 620
CviAII CATG 1 cut(s) 292
CviQI GTAC 2 cut(s) 302, 620
DdeI CTNAG 2 cut(s) 78, 182
DpnI GATC 1 cut(s) 413
DpnII GATC 1 cut(s) 411
DriI GACNNNNNGTC 1 cut(s) 741
EaeI YGGCCR 1 cut(s) 297
Eam1104I CTCTTC 1 cut(s) 212
Eam1105I GACNNNNNGTC 1 cut(s) 741
EarI CTCTTC 1 cut(s) 212
Eco130I CCWWGG 1 cut(s) 155
Eco147I AGGCCT 1 cut(s) 160
Eco24I GRGCYC 1 cut(s) 226
Eco47I GGWCC 1 cut(s) 656
EcoO109I RGGNCCY 1 cut(s) 656
EcoT14I CCWWGG 1 cut(s) 155
EcoT38I GRGCYC 1 cut(s) 226
ErhI CCWWGG 1 cut(s) 155
FaeI CATG 1 cut(s) 295
FaiI YATR 9 cut(s) 32, 245, 293, 381, 395, 402, 410, 626, 696
FalI AAGNNNNNCTT 2 cut(s) 438, 470
FaqI GGGAC 1 cut(s) 11
FatI CATG 1 cut(s) 291
FbaI TGATCA 1 cut(s) 411
Fnu4HI GCNGC 1 cut(s) 386
FokI GGATG 2 cut(s) 595, 692
FriOI GRGCYC 1 cut(s) 226
Fsp4HI GCNGC 1 cut(s) 386
FspBI CTAG 2 cut(s) 635, 716
GlaI GCGC 1 cut(s) 320
GluI GCNGC 1 cut(s) 386
GsuI CTGGAG 1 cut(s) 728
HaeIII GGCC 3 cut(s) 160, 299, 341
HgaI GACGC 1 cut(s) 282
HhaI GCGC 1 cut(s) 321
Hin1II CATG 1 cut(s) 295
Hin6I GCGC 1 cut(s) 319
HinP1I GCGC 1 cut(s) 319
HindIII AAGCTT 1 cut(s) 61
HinfI GANTC 5 cut(s) 178, 238, 638, 701, 742
HphI GGTGA 1 cut(s) 710
Hpy166II GTNNAC 1 cut(s) 596
Hpy188I TCNGA 2 cut(s) 201, 272
Hpy188III TCNNGA 4 cut(s) 356, 635, 707, 716
Hpy8I GTNNAC 1 cut(s) 596
HpyAV CCTTC 4 cut(s) 18, 64, 163, 168
HpyCH4III ACNGT 1 cut(s) 25
HpyCH4IV ACGT 1 cut(s) 513
HpyCH4V TGCA 4 cut(s) 71, 94, 166, 557
HpyF10VI GCNNNNNNNGC 3 cut(s) 82, 91, 394
HpyF3I CTNAG 2 cut(s) 78, 182
HpySE526I ACGT 1 cut(s) 513
Hsp92II CATG 1 cut(s) 295
HspAI GCGC 1 cut(s) 319
Ksp22I TGATCA 1 cut(s) 411
Kzo9I GATC 1 cut(s) 411
LmnI GCTCC 1 cut(s) 247
LpnPI CCDG 9 cut(s) 239, 329, 361, 374, 507, 612, 639, 662, 692
LweI GCATC 3 cut(s) 58, 195, 670
MaeI CTAG 2 cut(s) 635, 716
MaeII ACGT 1 cut(s) 513
MalI GATC 1 cut(s) 413
MboI GATC 1 cut(s) 411
MboII GAAGA 3 cut(s) 229, 247, 740
MhlI GDGCHC 1 cut(s) 226
MluCI AATT 4 cut(s) 259, 434, 484, 688
MlyI GAGTC 2 cut(s) 247, 647
MnlI CCTC 7 cut(s) 87, 323, 353, 496, 554, 577, 712
MroXI GAANNNNTTC 1 cut(s) 195
MseI TTAA 3 cut(s) 510, 530, 540
MwoI GCNNNNNNNGC 3 cut(s) 82, 91, 394
NdeII GATC 1 cut(s) 411
NlaIII CATG 1 cut(s) 295
PceI AGGCCT 1 cut(s) 160
PdmI GAANNNNTTC 1 cut(s) 195
PfeI GAWTC 2 cut(s) 178, 701
PkrI GCNGC 1 cut(s) 387
PleI GAGTC 2 cut(s) 246, 646
PpsI GAGTC 2 cut(s) 246, 646
PpuMI RGGWCCY 1 cut(s) 656
PshBI ATTAAT 1 cut(s) 530
PsiI TTATAA 1 cut(s) 626
Psp1406I AACGTT 1 cut(s) 513
Psp5II RGGWCCY 1 cut(s) 656
PspPI GGNCC 2 cut(s) 340, 656
PspPPI RGGWCCY 1 cut(s) 656
RsaI GTAC 2 cut(s) 303, 621
RsaNI GTAC 2 cut(s) 302, 620
SaqAI TTAA 3 cut(s) 510, 530, 540
SatI GCNGC 1 cut(s) 386
Sau3AI GATC 1 cut(s) 411
Sau96I GGNCC 2 cut(s) 340, 656
ScaI AGTACT 1 cut(s) 621
SchI GAGTC 2 cut(s) 247, 647
SduI GDGCHC 1 cut(s) 226
SfaNI GCATC 3 cut(s) 58, 195, 670
SinI GGWCC 1 cut(s) 656
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
Sse9I AATT 4 cut(s) 259, 434, 484, 688
SseBI AGGCCT 1 cut(s) 160
SsiI CCGC 2 cut(s) 12, 386
SspMI CTAG 2 cut(s) 635, 716
StuI AGGCCT 1 cut(s) 160
StyI CCWWGG 1 cut(s) 155
TaaI ACNGT 1 cut(s) 25
TaiI ACGT 1 cut(s) 516
TaqI TCGA 3 cut(s) 189, 288, 641
TasI AATT 4 cut(s) 259, 434, 484, 688
TatI WGTACW 1 cut(s) 619
TauI GCSGC 1 cut(s) 388
TfiI GAWTC 2 cut(s) 178, 701
Tru1I TTAA 3 cut(s) 510, 530, 540
Tru9I TTAA 3 cut(s) 510, 530, 540
TspDTI ATGAA 4 cut(s) 108, 447, 593, 741
VpaK11BI GGWCC 1 cut(s) 656
VspI ATTAAT 1 cut(s) 530
XapI RAATTY 1 cut(s) 688
XbaI TCTAGA 2 cut(s) 634, 715
XmnI GAANNNNTTC 1 cut(s) 195
XspI CTAG 2 cut(s) 635, 716
ZrmI AGTACT 1 cut(s) 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.