Rroxscaffold_7G00187210

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0012981
Physical Location & Seq
Forward (+)
26594890 .. 26597441
2552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00187210.1

Sequence Viewer

Length: 753 bp
ATGAGACCCTCTTCCGCACTTCAAACTGTCTCCATCTTCAGCTCTCTACCCAAAACCTTCATAAGGTTCAACGCACAGCCTCAATCTCATTATATTCAACTTTCAAAACCCAAGAGATGTTTACTGATAATAACAATGAGAGACAGAAGCAAAAACCCGAGGCCTTTGCAGAAGGGAAGGAATCTCAGCATCGAAGCCATTCAGACCATTCAGGCCTTGAAGAGAGCCAAGAAAAACGAGGGTCTTATGGAGCAAGTCTTCAATTCTAAGTTCAGGCGCCTATTGAAGCTCGACATGATGGCCGTACTCAAAGACCTCCTCCGCCAAAATGAATGCTTCTTGGCCCTCAAGGTCTTTGAAGACATTAGAAATGAGTACTGGTATAAGCCACAGGTTTTGCTTTATGCTGATATGATCAAGGTAATGGCTAGCAATGAATTGTTTGAACAAGTCGAAAATCTTTGCTTGTGCTTGAAAAGGGAAACTAATTTACAGCCCGACATTGAGGGTTTTAACGCTCTGTTGACAGCATTAGTAAGTTTTAACCTCCCTAAACTTGCTATGGAGTGCTATTACTTGATGAAAGGGGTTGGGTGTGAACCAGATAGATCATCATTTAGAATACTTATTAAAGGTCTAGAATCAGTGGGAGAGACAGGTCCCTTAGGTATTGTAAGGCAGGATGCTCAAAATTTGTATGGCGAGTCTCTGGAGTTTCTAGAGGAATATGAAGAAATGGCTGCAAGTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR_2 PPR_3

Protein Analysis

250

Amino Acids

28.83

Weight (kDa)

8.82

Isoelectric Point (pI)

49.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 162 - 211 1.9e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 166 - 213 5.1e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012981)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09315
fragaria_vesca FvH4_2g17040
malus_domestica MD10G1143100.v1.1
prunus_persica Prupe.8G182100_v2.0.a1 Prupe.8G182100_v2.0.a1
pyrus_communis pycom05g13780 pycom10g12300
rosa_chinensis RchiOBHm_Chr6g0281221
rosa_laevigata RLG00000012983
rosa_multiflora Rmu_sc0000847.1_g000051 Rmu_sc0027531.1_g000002
rosa_roxburghii Rroxscaffold_7G00187210
rosa_rugosa Rorug06G0139800
rosa_samantha Rh6AG251700 Rh6BG255000 Rh6CG254500 Rh6DG246300
rosa_wichuraiana Rw6G021860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 276
AciI CCGC 2 cut(s) 15, 322
AcoI YGGCCR 1 cut(s) 300
AcsI RAATTY 1 cut(s) 691
AcuI CTGAAG 1 cut(s) 22
AcyI GRCGYC 1 cut(s) 277
AfaI GTAC 2 cut(s) 306, 377
AfiI CCNNNNNNNGG 1 cut(s) 63
AluBI AGCT 2 cut(s) 42, 289
AluI AGCT 2 cut(s) 42, 289
Alw26I GTCTC 4 cut(s) 34, 135, 647, 711
Ama87I CYCGRG 1 cut(s) 157
AoxI GGCC 4 cut(s) 161, 213, 300, 342
ApeKI GCWGC 1 cut(s) 740
ApoI RAATTY 1 cut(s) 691
Asp700I GAANNNNTTC 1 cut(s) 198
AspLEI GCGC 1 cut(s) 279
AspS9I GGNCC 2 cut(s) 343, 659
AsuNHI GCTAGC 1 cut(s) 428
AvaI CYCGRG 1 cut(s) 157
AvaII GGWCC 1 cut(s) 659
AxyI CCTNAGG 1 cut(s) 664
BanI GGYRCC 1 cut(s) 276
BbsI GAAGAC 2 cut(s) 250, 366
BbvI GCAGC 1 cut(s) 727
BccI CCATC 2 cut(s) 41, 292
BceAI ACGGC 1 cut(s) 287
BcgI CGANNNNNNTGC 2 cut(s) 148, 182
BclI TGATCA 1 cut(s) 414
BcoDI GTCTC 4 cut(s) 34, 135, 647, 711
BfaI CTAG 3 cut(s) 429, 638, 719
BfoI RGCGCY 1 cut(s) 280
BisI GCNGC 1 cut(s) 741
BlsI GCNGC 1 cut(s) 742
BmcAI AGTACT 1 cut(s) 377
Bme18I GGWCC 1 cut(s) 659
BmeT110I CYCGRG 1 cut(s) 157
BmgT120I GGNCC 2 cut(s) 343, 659
BmiI GGNNCC 2 cut(s) 278, 661
BmsI GCATC 2 cut(s) 198, 673
BmtI GCTAGC 1 cut(s) 432
BpiI GAAGAC 2 cut(s) 250, 366
BpmI CTGGAG 1 cut(s) 731
BpuEI CTTGAG 1 cut(s) 332
BsaHI GRCGYC 1 cut(s) 277
BsaJI CCNNGG 1 cut(s) 158
Bsc4I CCNNNNNNNGG 1 cut(s) 63
Bse1I ACTGG 1 cut(s) 383
Bse21I CCTNAGG 1 cut(s) 664
Bse3DI GCAATG 1 cut(s) 439
BseDI CCNNGG 1 cut(s) 158
BseGI GGATG 1 cut(s) 688
BseLI CCNNNNNNNGG 1 cut(s) 63
BseMI GCAATG 1 cut(s) 439
BseMII CTCAG 1 cut(s) 199
BseNI ACTGG 1 cut(s) 383
BseRI GAGGAG 1 cut(s) 308
BseXI GCAGC 1 cut(s) 727
BshFI GGCC 4 cut(s) 163, 215, 302, 344
BshNI GGYRCC 1 cut(s) 276
BsiHKCI CYCGRG 1 cut(s) 157
BslFI GGGAC 1 cut(s) 645
BslI CCNNNNNNNGG 1 cut(s) 63
BsmAI GTCTC 4 cut(s) 34, 135, 647, 711
BsmFI GGGAC 1 cut(s) 645
BsmI GAATGC 1 cut(s) 338
BsnI GGCC 4 cut(s) 163, 215, 302, 344
BsoBI CYCGRG 1 cut(s) 157
Bsp143I GATC 2 cut(s) 414, 608
BspACI CCGC 2 cut(s) 15, 322
BspANI GGCC 4 cut(s) 163, 215, 302, 344
BspCNI CTCAG 1 cut(s) 198
BspLI GGNNCC 2 cut(s) 278, 661
BspOI GCTAGC 1 cut(s) 432
BspT107I GGYRCC 1 cut(s) 276
BsrDI GCAATG 1 cut(s) 439
BsrI ACTGG 1 cut(s) 383
BssECI CCNNGG 1 cut(s) 158
BssMI GATC 2 cut(s) 414, 608
BssNI GRCGYC 1 cut(s) 277
Bst4CI ACNGT 1 cut(s) 28
Bst6I CTCTTC 2 cut(s) 16, 215
BstACI GRCGYC 1 cut(s) 277
BstC8I GCNNGC 1 cut(s) 430
BstDEI CTNAG 3 cut(s) 185, 267, 664
BstENI CCTNNNNNAGG 1 cut(s) 61
BstF5I GGATG 1 cut(s) 688
BstH2I RGCGCY 1 cut(s) 280
BstHHI GCGC 1 cut(s) 279
BstKTI GATC 2 cut(s) 417, 611
BstMAI GTCTC 4 cut(s) 34, 135, 647, 711
BstMBI GATC 2 cut(s) 414, 608
BstV1I GCAGC 1 cut(s) 727
BstV2I GAAGAC 2 cut(s) 250, 366
Bsu36I CCTNAGG 1 cut(s) 664
BsuRI GGCC 4 cut(s) 163, 215, 302, 344
BtsCI GGATG 1 cut(s) 688
BtsIMutI CAGTG 1 cut(s) 651
Cac8I GCNNGC 1 cut(s) 430
CfoI GCGC 1 cut(s) 279
Cfr13I GGNCC 2 cut(s) 343, 659
Csp6I GTAC 2 cut(s) 305, 376
CspCI CAANNNNNGTGG 2 cut(s) 378, 413
CviAII CATG 1 cut(s) 295
CviQI GTAC 2 cut(s) 305, 376
DdeI CTNAG 3 cut(s) 185, 267, 664
DinI GGCGCC 1 cut(s) 278
DpnI GATC 2 cut(s) 416, 610
DpnII GATC 2 cut(s) 414, 608
EaeI YGGCCR 1 cut(s) 300
Eam1104I CTCTTC 2 cut(s) 16, 215
EarI CTCTTC 2 cut(s) 16, 215
EciI GGCGGA 1 cut(s) 311
Eco147I AGGCCT 2 cut(s) 163, 215
Eco47I GGWCC 1 cut(s) 659
Eco57I CTGAAG 1 cut(s) 22
Eco81I CCTNAGG 1 cut(s) 664
Eco88I CYCGRG 1 cut(s) 157
EcoNI CCTNNNNNAGG 1 cut(s) 61
EcoO109I RGGNCCY 1 cut(s) 659
EgeI GGCGCC 1 cut(s) 278
EheI GGCGCC 1 cut(s) 278
FaeI CATG 1 cut(s) 298
FaqI GGGAC 1 cut(s) 645
FatI CATG 1 cut(s) 294
FbaI TGATCA 1 cut(s) 414
Fnu4HI GCNGC 1 cut(s) 741
FokI GGATG 1 cut(s) 695
Fsp4HI GCNGC 1 cut(s) 741
FspBI CTAG 3 cut(s) 429, 638, 719
GlaI GCGC 1 cut(s) 278
GluI GCNGC 1 cut(s) 741
GsuI CTGGAG 1 cut(s) 731
HaeII RGCGCY 1 cut(s) 280
HaeIII GGCC 4 cut(s) 163, 215, 302, 344
HhaI GCGC 1 cut(s) 279
Hin1I GRCGYC 1 cut(s) 277
Hin1II CATG 1 cut(s) 298
Hin6I GCGC 1 cut(s) 277
HinP1I GCGC 1 cut(s) 277
HincII GTYRAC 1 cut(s) 525
HindII GTYRAC 1 cut(s) 525
HinfI GANTC 3 cut(s) 181, 641, 704
Hpy166II GTNNAC 3 cut(s) 122, 525, 599
Hpy188I TCNGA 1 cut(s) 204
Hpy188III TCNNGA 3 cut(s) 638, 710, 719
Hpy8I GTNNAC 3 cut(s) 122, 525, 599
HpyAV CCTTC 3 cut(s) 67, 166, 171
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4V TGCA 2 cut(s) 169, 743
HpyF3I CTNAG 3 cut(s) 185, 267, 664
Hsp92I GRCGYC 1 cut(s) 277
Hsp92II CATG 1 cut(s) 298
HspAI GCGC 1 cut(s) 277
KasI GGCGCC 1 cut(s) 276
Ksp22I TGATCA 1 cut(s) 414
Kzo9I GATC 2 cut(s) 414, 608
LmnI GCTCC 1 cut(s) 250
LpnPI CCDG 8 cut(s) 197, 259, 364, 377, 615, 642, 665, 695
Lsp1109I GCAGC 1 cut(s) 727
LweI GCATC 2 cut(s) 198, 673
MaeI CTAG 3 cut(s) 429, 638, 719
MalI GATC 2 cut(s) 416, 610
MboI GATC 2 cut(s) 414, 608
MboII GAAGA 6 cut(s) 3, 28, 232, 250, 371, 743
MluCI AATT 4 cut(s) 262, 437, 487, 691
Mly113I GGCGCC 1 cut(s) 277
MlyI GAGTC 1 cut(s) 713
MroXI GAANNNNTTC 1 cut(s) 198
MseI TTAA 3 cut(s) 513, 543, 630
Mva1269I GAATGC 1 cut(s) 338
NarI GGCGCC 1 cut(s) 277
NdeII GATC 2 cut(s) 414, 608
NheI GCTAGC 1 cut(s) 428
NlaIII CATG 1 cut(s) 298
NlaIV GGNNCC 2 cut(s) 278, 661
PceI AGGCCT 2 cut(s) 163, 215
PctI GAATGC 1 cut(s) 338
PdmI GAANNNNTTC 1 cut(s) 198
PfeI GAWTC 2 cut(s) 181, 641
PkrI GCNGC 1 cut(s) 742
PleI GAGTC 1 cut(s) 712
PluTI GGCGCC 1 cut(s) 280
PpsI GAGTC 1 cut(s) 712
PpuMI RGGWCCY 1 cut(s) 659
Psp5II RGGWCCY 1 cut(s) 659
PspN4I GGNNCC 2 cut(s) 278, 661
PspPI GGNCC 2 cut(s) 343, 659
PspPPI RGGWCCY 1 cut(s) 659
RsaI GTAC 2 cut(s) 306, 377
RsaNI GTAC 2 cut(s) 305, 376
SaqAI TTAA 3 cut(s) 513, 543, 630
SatI GCNGC 1 cut(s) 741
Sau3AI GATC 2 cut(s) 414, 608
Sau96I GGNCC 2 cut(s) 343, 659
ScaI AGTACT 1 cut(s) 377
SchI GAGTC 1 cut(s) 713
SfaNI GCATC 2 cut(s) 198, 673
SfoI GGCGCC 1 cut(s) 278
SinI GGWCC 1 cut(s) 659
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
Sse9I AATT 4 cut(s) 262, 437, 487, 691
SseBI AGGCCT 2 cut(s) 163, 215
SsiI CCGC 2 cut(s) 15, 322
SspDI GGCGCC 1 cut(s) 276
SspMI CTAG 3 cut(s) 429, 638, 719
StuI AGGCCT 2 cut(s) 163, 215
TaaI ACNGT 1 cut(s) 28
TaqI TCGA 3 cut(s) 192, 291, 453
TasI AATT 4 cut(s) 262, 437, 487, 691
TatI WGTACW 1 cut(s) 375
TfiI GAWTC 2 cut(s) 181, 641
Tru1I TTAA 3 cut(s) 513, 543, 630
Tru9I TTAA 3 cut(s) 513, 543, 630
TscAI CASTG 1 cut(s) 651
TseI GCWGC 1 cut(s) 740
TspDTI ATGAA 5 cut(s) 49, 345, 450, 596, 744
TspRI CASTG 1 cut(s) 651
VpaK11BI GGWCC 1 cut(s) 659
XagI CCTNNNNNAGG 1 cut(s) 61
XapI RAATTY 1 cut(s) 691
XbaI TCTAGA 2 cut(s) 637, 718
XmnI GAANNNNTTC 1 cut(s) 198
XspI CTAG 3 cut(s) 429, 638, 719
ZrmI AGTACT 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.