Rmu_sc0000847.1_g000051

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000847.1
OG0012981
Physical Location & Seq
Forward (+)
223238 .. 225468
2231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000847.1_g000051.1.cds

Sequence Viewer

Length: 774 bp
atgagagacagaagcaagaacccgaggcctttgcagaagggaaggaatctcagcatcgaagccattcagacaattcaagctttgaagagagccaagaaaaacgagggtcttatggagcaagtcttcaattctaagttcaggcgcttattgaagctcgacatgatggccgtgctcaaagacctcctccgccaaaatgaatgcatcttggccctcaaggtctttgaagacattagaaaggagtactggtataagccacaggttttgctttatgttgatatgatcaaggtaatggctagcaatgaattgtttgaacaagtcgaaaatctttgcttgtgcttgaaaaaggaaactaatttacagcctgacattgagggttttaacgctctcttgacagcattattaagttttaacctccctacacttgctatggagtgctattacttgatgaaaggcgtagggtgtgaaccagataggtcatcatttagaatacttattaaaggtctagaatcagtgggagagacaggtcccttaggtattgtaaggcaggatgctcaaaatttgtatggcgagtctctggagtttctagaggaggatgaagaaatggcacctggtgaacccgccgttaattcccaagctttggaagatgatcccgactatgatcaaagttttgctgcatcgttttcagggcctgtagagtgtagacccagcctcagccccaccgaagtaccagctgctactgatgtcaacacaaatgcagctgatctaaaaggctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR_2 PPR_3

Protein Analysis

257

Amino Acids

28.96

Weight (kDa)

4.8

Isoelectric Point (pI)

46.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012981)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09315
fragaria_vesca FvH4_2g17040
malus_domestica MD10G1143100.v1.1
prunus_persica Prupe.8G182100_v2.0.a1 Prupe.8G182100_v2.0.a1
pyrus_communis pycom05g13780 pycom10g12300
rosa_chinensis RchiOBHm_Chr6g0281221
rosa_laevigata RLG00000012983
rosa_multiflora Rmu_sc0000847.1_g000051 Rmu_sc0027531.1_g000002
rosa_roxburghii Rroxscaffold_7G00187210
rosa_rugosa Rorug06G0139800
rosa_samantha Rh6AG251700 Rh6BG255000 Rh6CG254500 Rh6DG246300
rosa_wichuraiana Rw6G021860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 604
AccB7I CCANNNNNTGG 1 cut(s) 637
AccI GTMKAC 1 cut(s) 700
AciI CCGC 2 cut(s) 187, 618
AclWI GGATC 1 cut(s) 641
AcoI YGGCCR 1 cut(s) 165
AcsI RAATTY 1 cut(s) 556
AdeI CACNNNGTG 1 cut(s) 611
AfaI GTAC 2 cut(s) 242, 726
AfiI CCNNNNNNNGG 1 cut(s) 637
AgsI TTSAA 7 cut(s) 77, 85, 127, 151, 224, 311, 340
AjnI CCWGG 1 cut(s) 607
AluBI AGCT 5 cut(s) 80, 154, 635, 731, 758
AluI AGCT 5 cut(s) 80, 154, 635, 731, 758
Alw21I GWGCWC 1 cut(s) 174
Alw26I GTCTC 2 cut(s) 512, 576
AlwI GGATC 1 cut(s) 641
AlwNI CAGNNNCTG 1 cut(s) 689
Ama87I CYCGRG 1 cut(s) 22
AoxI GGCC 4 cut(s) 26, 165, 207, 686
ApeKI GCWGC 3 cut(s) 671, 731, 755
ApoI RAATTY 1 cut(s) 556
Asp700I GAANNNNTTC 1 cut(s) 63
AspLEI GCGC 1 cut(s) 144
AspS9I GGNCC 3 cut(s) 208, 524, 686
AsuHPI GGTGA 1 cut(s) 623
AsuNHI GCTAGC 1 cut(s) 293
AvaI CYCGRG 1 cut(s) 22
AvaII GGWCC 1 cut(s) 524
AxyI CCTNAGG 1 cut(s) 529
BaeI ACNNNNGTAYC 2 cut(s) 708, 741
BanI GGYRCC 1 cut(s) 604
BbsI GAAGAC 2 cut(s) 115, 231
Bbv12I GWGCWC 1 cut(s) 174
BbvCI CCTCAGC 1 cut(s) 710
BbvI GCAGC 3 cut(s) 658, 718, 767
BccI CCATC 1 cut(s) 157
BceAI ACGGC 2 cut(s) 152, 605
BcgI CGANNNNNNTGC 2 cut(s) 13, 47
BciT130I CCWGG 1 cut(s) 609
BclI TGATCA 2 cut(s) 279, 658
BcoDI GTCTC 2 cut(s) 512, 576
BfaI CTAG 3 cut(s) 294, 503, 584
BfmI CTRYAG 1 cut(s) 690
BfoI RGCGCY 1 cut(s) 145
BisI GCNGC 3 cut(s) 672, 732, 756
BlsI GCNGC 3 cut(s) 673, 733, 757
BmcAI AGTACT 1 cut(s) 242
Bme1390I CCNGG 1 cut(s) 609
Bme18I GGWCC 1 cut(s) 524
BmeT110I CYCGRG 1 cut(s) 22
BmgT120I GGNCC 3 cut(s) 208, 524, 686
BmiI GGNNCC 2 cut(s) 526, 606
BmrFI CCNGG 1 cut(s) 609
BmsI GCATC 4 cut(s) 63, 210, 538, 683
BmtI GCTAGC 1 cut(s) 297
BpiI GAAGAC 2 cut(s) 115, 231
BpmI CTGGAG 1 cut(s) 596
Bpu10I CCTNAGC 1 cut(s) 710
BpuEI CTTGAG 1 cut(s) 197
BsaJI CCNNGG 1 cut(s) 23
BsaXI ACNNNNNCTCC 2 cut(s) 230, 260
Bsc4I CCNNNNNNNGG 1 cut(s) 637
Bse1I ACTGG 1 cut(s) 248
Bse21I CCTNAGG 1 cut(s) 529
Bse3DI GCAATG 1 cut(s) 304
BseBI CCWGG 1 cut(s) 609
BseDI CCNNGG 1 cut(s) 23
BseGI GGATG 2 cut(s) 553, 598
BseLI CCNNNNNNNGG 1 cut(s) 637
BseMI GCAATG 1 cut(s) 304
BseMII CTCAG 2 cut(s) 64, 724
BseNI ACTGG 1 cut(s) 248
BseRI GAGGAG 2 cut(s) 173, 602
BseXI GCAGC 3 cut(s) 658, 718, 767
BseYI CCCAGC 1 cut(s) 704
BshFI GGCC 4 cut(s) 28, 167, 209, 688
BshNI GGYRCC 1 cut(s) 604
BsiHKAI GWGCWC 1 cut(s) 174
BsiHKCI CYCGRG 1 cut(s) 22
BslFI GGGAC 1 cut(s) 510
BslI CCNNNNNNNGG 1 cut(s) 637
BsmAI GTCTC 2 cut(s) 512, 576
BsmFI GGGAC 1 cut(s) 510
BsmI GAATGC 1 cut(s) 203
BsnI GGCC 4 cut(s) 28, 167, 209, 688
BsoBI CYCGRG 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 174
Bsp143I GATC 4 cut(s) 279, 646, 658, 760
BspACI CCGC 2 cut(s) 187, 618
BspANI GGCC 4 cut(s) 28, 167, 209, 688
BspCNI CTCAG 2 cut(s) 63, 723
BspLI GGNNCC 2 cut(s) 526, 606
BspOI GCTAGC 1 cut(s) 297
BspPI GGATC 1 cut(s) 641
BspT107I GGYRCC 1 cut(s) 604
BsrDI GCAATG 1 cut(s) 304
BsrI ACTGG 1 cut(s) 248
BssECI CCNNGG 1 cut(s) 23
BssMI GATC 4 cut(s) 279, 646, 658, 760
Bst2UI CCWGG 1 cut(s) 609
Bst6I CTCTTC 1 cut(s) 80
BstC8I GCNNGC 1 cut(s) 295
BstDEI CTNAG 4 cut(s) 50, 132, 529, 710
BstF5I GGATG 2 cut(s) 553, 598
BstH2I RGCGCY 1 cut(s) 145
BstHHI GCGC 1 cut(s) 144
BstKTI GATC 4 cut(s) 282, 649, 661, 763
BstMAI GTCTC 2 cut(s) 512, 576
BstMBI GATC 4 cut(s) 279, 646, 658, 760
BstNI CCWGG 1 cut(s) 609
BstSCI CCNGG 1 cut(s) 607
BstSFI CTRYAG 1 cut(s) 690
BstV1I GCAGC 3 cut(s) 658, 718, 767
BstV2I GAAGAC 2 cut(s) 115, 231
Bsu36I CCTNAGG 1 cut(s) 529
BsuRI GGCC 4 cut(s) 28, 167, 209, 688
BtsCI GGATG 2 cut(s) 553, 598
BtsIMutI CAGTG 1 cut(s) 516
Cac8I GCNNGC 1 cut(s) 295
CaiI CAGNNNCTG 1 cut(s) 689
CfoI GCGC 1 cut(s) 144
Cfr13I GGNCC 3 cut(s) 208, 524, 686
CsiI ACCWGGT 1 cut(s) 607
Csp6I GTAC 2 cut(s) 241, 725
CspCI CAANNNNNGTGG 2 cut(s) 243, 278
CviAII CATG 1 cut(s) 160
CviQI GTAC 2 cut(s) 241, 725
DdeI CTNAG 4 cut(s) 50, 132, 529, 710
DpnI GATC 4 cut(s) 281, 648, 660, 762
DpnII GATC 4 cut(s) 279, 646, 658, 760
DraIII CACNNNGTG 1 cut(s) 611
EaeI YGGCCR 1 cut(s) 165
Eam1104I CTCTTC 1 cut(s) 80
EarI CTCTTC 1 cut(s) 80
EciI GGCGGA 1 cut(s) 176
Eco147I AGGCCT 1 cut(s) 28
Eco47I GGWCC 1 cut(s) 524
Eco81I CCTNAGG 1 cut(s) 529
Eco88I CYCGRG 1 cut(s) 22
EcoO109I RGGNCCY 2 cut(s) 524, 686
EcoRII CCWGG 1 cut(s) 607
EcoT22I ATGCAT 1 cut(s) 203
FaeI CATG 1 cut(s) 163
FaiI YATR 8 cut(s) 113, 161, 249, 270, 278, 428, 564, 657
FaqI GGGAC 1 cut(s) 510
FatI CATG 1 cut(s) 159
FauI CCCGC 1 cut(s) 625
FbaI TGATCA 2 cut(s) 279, 658
FblI GTMKAC 1 cut(s) 700
Fnu4HI GCNGC 3 cut(s) 672, 732, 756
FokI GGATG 2 cut(s) 560, 605
Fsp4HI GCNGC 3 cut(s) 672, 732, 756
FspBI CTAG 3 cut(s) 294, 503, 584
GlaI GCGC 1 cut(s) 143
GluI GCNGC 3 cut(s) 672, 732, 756
GsaI CCCAGC 1 cut(s) 708
GsuI CTGGAG 1 cut(s) 596
HaeII RGCGCY 1 cut(s) 145
HaeIII GGCC 4 cut(s) 28, 167, 209, 688
HhaI GCGC 1 cut(s) 144
Hin1II CATG 1 cut(s) 163
Hin6I GCGC 1 cut(s) 142
HinP1I GCGC 1 cut(s) 142
HincII GTYRAC 1 cut(s) 745
HindII GTYRAC 1 cut(s) 745
HindIII AAGCTT 2 cut(s) 78, 633
HinfI GANTC 3 cut(s) 46, 506, 569
HphI GGTGA 1 cut(s) 623
Hpy166II GTNNAC 4 cut(s) 464, 614, 701, 745
Hpy188I TCNGA 1 cut(s) 69
Hpy188III TCNNGA 5 cut(s) 388, 503, 575, 584, 650
Hpy8I GTNNAC 4 cut(s) 464, 614, 701, 745
HpyAV CCTTC 2 cut(s) 31, 36
HpyCH4V TGCA 4 cut(s) 34, 201, 674, 755
HpyF3I CTNAG 4 cut(s) 50, 132, 529, 710
Hsp92II CATG 1 cut(s) 163
HspAI GCGC 1 cut(s) 142
Ksp22I TGATCA 2 cut(s) 279, 658
Kzo9I GATC 4 cut(s) 279, 646, 658, 760
LmnI GCTCC 1 cut(s) 115
Lsp1109I GCAGC 3 cut(s) 658, 718, 767
LweI GCATC 4 cut(s) 63, 210, 538, 683
MabI ACCWGGT 1 cut(s) 607
MaeI CTAG 3 cut(s) 294, 503, 584
MalI GATC 4 cut(s) 281, 648, 660, 762
MboI GATC 4 cut(s) 279, 646, 658, 760
MboII GAAGA 5 cut(s) 97, 115, 236, 608, 653
MhlI GDGCHC 1 cut(s) 174
MluCI AATT 6 cut(s) 72, 127, 302, 352, 556, 625
MlyI GAGTC 1 cut(s) 578
Mph1103I ATGCAT 1 cut(s) 203
MroXI GAANNNNTTC 1 cut(s) 63
MseI TTAA 5 cut(s) 378, 401, 408, 495, 624
MspA1I CMGCKG 2 cut(s) 731, 758
MspR9I CCNGG 1 cut(s) 609
Mva1269I GAATGC 1 cut(s) 203
MvaI CCWGG 1 cut(s) 609
NdeII GATC 4 cut(s) 279, 646, 658, 760
NheI GCTAGC 1 cut(s) 293
NlaIII CATG 1 cut(s) 163
NlaIV GGNNCC 2 cut(s) 526, 606
NsiI ATGCAT 1 cut(s) 203
PceI AGGCCT 1 cut(s) 28
PctI GAATGC 1 cut(s) 203
PdmI GAANNNNTTC 1 cut(s) 63
PfeI GAWTC 2 cut(s) 46, 506
PflMI CCANNNNNTGG 1 cut(s) 637
PkrI GCNGC 3 cut(s) 673, 733, 757
PleI GAGTC 1 cut(s) 577
PpsI GAGTC 1 cut(s) 577
PpuMI RGGWCCY 1 cut(s) 524
Psp5II RGGWCCY 1 cut(s) 524
Psp6I CCWGG 1 cut(s) 607
PspFI CCCAGC 1 cut(s) 704
PspGI CCWGG 1 cut(s) 607
PspN4I GGNNCC 2 cut(s) 526, 606
PspPI GGNCC 3 cut(s) 208, 524, 686
PspPPI RGGWCCY 1 cut(s) 524
PstNI CAGNNNCTG 1 cut(s) 689
PvuII CAGCTG 2 cut(s) 731, 758
RsaI GTAC 2 cut(s) 242, 726
RsaNI GTAC 2 cut(s) 241, 725
SaqAI TTAA 5 cut(s) 378, 401, 408, 495, 624
SatI GCNGC 3 cut(s) 672, 732, 756
Sau3AI GATC 4 cut(s) 279, 646, 658, 760
Sau96I GGNCC 3 cut(s) 208, 524, 686
ScaI AGTACT 1 cut(s) 242
SchI GAGTC 1 cut(s) 578
ScrFI CCNGG 1 cut(s) 609
SduI GDGCHC 1 cut(s) 174
SexAI ACCWGGT 1 cut(s) 607
SfaNI GCATC 4 cut(s) 63, 210, 538, 683
SfcI CTRYAG 1 cut(s) 690
SinI GGWCC 1 cut(s) 524
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
Sse9I AATT 6 cut(s) 72, 127, 302, 352, 556, 625
SseBI AGGCCT 1 cut(s) 28
SsiI CCGC 2 cut(s) 187, 618
SspMI CTAG 3 cut(s) 294, 503, 584
StuI AGGCCT 1 cut(s) 28
StyD4I CCNGG 1 cut(s) 607
TaqI TCGA 3 cut(s) 57, 156, 318
TasI AATT 6 cut(s) 72, 127, 302, 352, 556, 625
TatI WGTACW 1 cut(s) 240
TfiI GAWTC 2 cut(s) 46, 506
Tru1I TTAA 5 cut(s) 378, 401, 408, 495, 624
Tru9I TTAA 5 cut(s) 378, 401, 408, 495, 624
TscAI CASTG 1 cut(s) 516
TseI GCWGC 3 cut(s) 671, 731, 755
TspDTI ATGAA 4 cut(s) 210, 315, 461, 609
TspRI CASTG 1 cut(s) 516
Van91I CCANNNNNTGG 1 cut(s) 637
VpaK11BI GGWCC 1 cut(s) 524
XapI RAATTY 1 cut(s) 556
XbaI TCTAGA 2 cut(s) 502, 583
XmiI GTMKAC 1 cut(s) 700
XmnI GAANNNNTTC 1 cut(s) 63
XspI CTAG 3 cut(s) 294, 503, 584
ZrmI AGTACT 1 cut(s) 242
Zsp2I ATGCAT 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.