Rmu_sc0027531.1_g000002

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0027531.1
OG0012981
Physical Location & Seq
Forward (+)
7729 .. 11438
3710 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0027531.1_g000002.1.cds

Sequence Viewer

Length: 1305 bp
atgagcattggtgtccgacgacgatgcgtgcagaggcgctgggcagagcacgctaggcaccgggggctaggtagcgaggtggcaggtgggctgctacaggagtcgtcgttgaggtcgagattgggtctcaagggcaacgcggagatcaattgctctggtcctactgttggctggattctggtgaccggttgcaggattcttgtcatcgcttgccagattccggtgatctgttgtcggattaagattaatcgaaaatcggaccacaaatgtcggttcagttcatcacttcatcttgttaataccacgattccgggtcggctcggttcgggtaagttcggttcaagtcggttcggttcgtatcggacactgaaaacgcagggtatttatacgactatcttcttctccaaagagactggctttggtcagcaaaagccaaacacaatgagaccctctgccgcacttcaaactgtcaccatcttcagctctctatccaaaaccttcataggctttaatgcacagccacactgtcagtatctgcaactttcaaaacccaagagatgtttactgataataacaatgagagacagaagcaagaacccgaggcctttgcagaagggaaggaatctcagcatcgaagccattcagacaattcaagctttgaagagagccaagaaaaacgagggtcttatggagcaagtcttcaattctaagttcaggcgcttattgaagctcgacatgatggccgtgctcaaagacctcctccgccaaaatgaatgcttcttggccctcaaggtctttgaagacattagaaaggagtactggtataagccacaggttttgctttatgctgacatgatcaaggtaatggctagcaatgaattgtttgagcaagtcgaaaatctttgcttgtgcttgaaaaaggaaactaatttacagcccgacattgagggttttaacgctctcttgacagcattattaagttttaacctccctacacttgctatggagtgctattacttgatgaaaggcgtagggtgtgaaccagataggtcatcatttagaatacttattaaaggtctagaatcagtgggagagacaggtcccttagatattgtaaggcaggatgctcaaaatttgtatggcgagtctctggagtttctagaggaggatgaagaaatggcacctggtgaacccgccgttaattcccaagctttggaagatgatcccgactatgatcaaagttttgctgcatcgttttcagggcctgtagagtgtagacccagcctcagccccaccggttgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR_2 PPR_3

Protein Analysis

434

Amino Acids

48.76

Weight (kDa)

9.1

Isoelectric Point (pI)

47.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012981)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09315
fragaria_vesca FvH4_2g17040
malus_domestica MD10G1143100.v1.1
prunus_persica Prupe.8G182100_v2.0.a1 Prupe.8G182100_v2.0.a1
pyrus_communis pycom05g13780 pycom10g12300
rosa_chinensis RchiOBHm_Chr6g0281221
rosa_laevigata RLG00000012983
rosa_multiflora Rmu_sc0000847.1_g000051 Rmu_sc0027531.1_g000002
rosa_roxburghii Rroxscaffold_7G00187210
rosa_rugosa Rorug06G0139800
rosa_samantha Rh6AG251700 Rh6BG255000 Rh6CG254500 Rh6DG246300
rosa_wichuraiana Rw6G021860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 74
Acc36I ACCTGC 1 cut(s) 74
AccB1I GGYRCC 2 cut(s) 57, 1180
AccB7I CCANNNNNTGG 1 cut(s) 1213
AccI GTMKAC 1 cut(s) 1276
AccII CGCG 1 cut(s) 140
AciI CCGC 4 cut(s) 140, 456, 763, 1194
AclWI GGATC 1 cut(s) 1217
AcoI YGGCCR 1 cut(s) 741
AcsI RAATTY 1 cut(s) 1132
AcuI CTGAAG 1 cut(s) 463
AdeI CACNNNGTG 1 cut(s) 1187
AfaI GTAC 1 cut(s) 818
AfiI CCNNNNNNNGG 4 cut(s) 167, 192, 220, 1213
AgeI ACCGGT 2 cut(s) 185, 1295
AgsI TTSAA 9 cut(s) 342, 464, 546, 653, 661, 703, 727, 800, 916
AjnI CCWGG 1 cut(s) 1183
AluBI AGCT 4 cut(s) 483, 656, 730, 1211
AluI AGCT 4 cut(s) 483, 656, 730, 1211
Alw21I GWGCWC 2 cut(s) 51, 750
Alw26I GTCTC 6 cut(s) 131, 404, 439, 576, 1088, 1152
AlwI GGATC 1 cut(s) 1217
AlwNI CAGNNNCTG 2 cut(s) 535, 1265
Ama87I CYCGRG 1 cut(s) 598
AoxI GGCC 4 cut(s) 602, 741, 783, 1262
ApeKI GCWGC 2 cut(s) 91, 1247
ApoI RAATTY 1 cut(s) 1132
AseI ATTAAT 1 cut(s) 246
AsiGI ACCGGT 2 cut(s) 185, 1295
Asp700I GAANNNNTTC 1 cut(s) 639
AspLEI GCGC 2 cut(s) 39, 720
AspS9I GGNCC 5 cut(s) 158, 259, 784, 1100, 1262
AsuC2I CCSGG 2 cut(s) 62, 312
AsuHPI GGTGA 4 cut(s) 193, 235, 463, 1199
AsuNHI GCTAGC 1 cut(s) 869
AvaI CYCGRG 1 cut(s) 598
AvaII GGWCC 3 cut(s) 158, 259, 1100
BanI GGYRCC 2 cut(s) 57, 1180
BbsI GAAGAC 2 cut(s) 691, 807
Bbv12I GWGCWC 2 cut(s) 51, 750
BbvCI CCTCAGC 1 cut(s) 1286
BbvI GCAGC 2 cut(s) 78, 1234
BccI CCATC 2 cut(s) 482, 733
BceAI ACGGC 2 cut(s) 728, 1181
BcgI CGANNNNNNTGC 4 cut(s) 6, 40, 589, 623
BciT130I CCWGG 1 cut(s) 1185
BclI TGATCA 2 cut(s) 855, 1234
BcnI CCSGG 2 cut(s) 62, 312
BcoDI GTCTC 6 cut(s) 131, 404, 439, 576, 1088, 1152
BfaI CTAG 5 cut(s) 54, 68, 870, 1079, 1160
BfmI CTRYAG 2 cut(s) 95, 1266
BfoI RGCGCY 2 cut(s) 40, 721
BfuAI ACCTGC 1 cut(s) 74
BisI GCNGC 3 cut(s) 92, 456, 1248
BlsI GCNGC 3 cut(s) 93, 457, 1249
BmcAI AGTACT 1 cut(s) 818
Bme1390I CCNGG 3 cut(s) 62, 312, 1185
Bme18I GGWCC 3 cut(s) 158, 259, 1100
BmeT110I CYCGRG 1 cut(s) 598
BmgT120I GGNCC 5 cut(s) 158, 259, 784, 1100, 1262
BmiI GGNNCC 3 cut(s) 59, 1102, 1182
BmrFI CCNGG 3 cut(s) 62, 312, 1185
BmsI GCATC 4 cut(s) 14, 639, 1114, 1259
BmtI GCTAGC 1 cut(s) 873
BpiI GAAGAC 2 cut(s) 691, 807
BpmI CTGGAG 1 cut(s) 1172
Bpu10I CCTNAGC 1 cut(s) 1286
BpuEI CTTGAG 2 cut(s) 113, 773
BpuMI CCSGG 2 cut(s) 62, 312
BsaI GGTCTC 2 cut(s) 131, 439
BsaJI CCNNGG 2 cut(s) 61, 599
BsaWI WCCGGW 3 cut(s) 185, 220, 1295
BsaXI ACNNNNNCTCC 4 cut(s) 92, 122, 806, 836
Bsc4I CCNNNNNNNGG 4 cut(s) 167, 192, 220, 1213
Bse118I RCCGGY 2 cut(s) 185, 1295
Bse1I ACTGG 2 cut(s) 418, 824
Bse3DI GCAATG 1 cut(s) 880
BseBI CCWGG 1 cut(s) 1185
BseDI CCNNGG 2 cut(s) 61, 599
BseGI GGATG 2 cut(s) 1129, 1174
BseLI CCNNNNNNNGG 4 cut(s) 167, 192, 220, 1213
BseMI GCAATG 1 cut(s) 880
BseMII CTCAG 2 cut(s) 640, 1300
BseNI ACTGG 2 cut(s) 418, 824
BseRI GAGGAG 2 cut(s) 749, 1178
BseXI GCAGC 2 cut(s) 78, 1234
BseYI CCCAGC 2 cut(s) 39, 1280
BsgI GTGCAG 1 cut(s) 50
Bsh1236I CGCG 1 cut(s) 140
BshFI GGCC 4 cut(s) 604, 743, 785, 1264
BshNI GGYRCC 2 cut(s) 57, 1180
BshTI ACCGGT 2 cut(s) 185, 1295
BsiHKAI GWGCWC 2 cut(s) 51, 750
BsiHKCI CYCGRG 1 cut(s) 598
BsiSI CCGG 5 cut(s) 61, 186, 221, 311, 1296
BslFI GGGAC 1 cut(s) 1086
BslI CCNNNNNNNGG 4 cut(s) 167, 192, 220, 1213
BsmAI GTCTC 6 cut(s) 131, 404, 439, 576, 1088, 1152
BsmFI GGGAC 1 cut(s) 1086
BsmI GAATGC 1 cut(s) 779
BsnI GGCC 4 cut(s) 604, 743, 785, 1264
Bso31I GGTCTC 2 cut(s) 131, 439
BsoBI CYCGRG 1 cut(s) 598
Bsp1286I GDGCHC 2 cut(s) 51, 750
Bsp143I GATC 5 cut(s) 144, 225, 855, 1222, 1234
BspACI CCGC 4 cut(s) 140, 456, 763, 1194
BspANI GGCC 4 cut(s) 604, 743, 785, 1264
BspCNI CTCAG 2 cut(s) 639, 1299
BspFNI CGCG 1 cut(s) 140
BspLI GGNNCC 3 cut(s) 59, 1102, 1182
BspMI ACCTGC 1 cut(s) 74
BspOI GCTAGC 1 cut(s) 873
BspPI GGATC 1 cut(s) 1217
BspT107I GGYRCC 2 cut(s) 57, 1180
BspTNI GGTCTC 2 cut(s) 131, 439
BsrDI GCAATG 1 cut(s) 880
BsrFI RCCGGY 2 cut(s) 185, 1295
BsrI ACTGG 2 cut(s) 418, 824
BssAI RCCGGY 2 cut(s) 185, 1295
BssECI CCNNGG 2 cut(s) 61, 599
BssMI GATC 5 cut(s) 144, 225, 855, 1222, 1234
Bst2UI CCWGG 1 cut(s) 1185
Bst4CI ACNGT 3 cut(s) 166, 469, 527
Bst6I CTCTTC 1 cut(s) 656
BstC8I GCNNGC 4 cut(s) 29, 51, 211, 871
BstDEI CTNAG 4 cut(s) 626, 708, 1105, 1286
BstEII GGTNACC 1 cut(s) 181
BstF5I GGATG 2 cut(s) 1129, 1174
BstFNI CGCG 1 cut(s) 140
BstH2I RGCGCY 2 cut(s) 40, 721
BstHHI GCGC 2 cut(s) 39, 720
BstKTI GATC 5 cut(s) 147, 228, 858, 1225, 1237
BstMAI GTCTC 6 cut(s) 131, 404, 439, 576, 1088, 1152
BstMBI GATC 5 cut(s) 144, 225, 855, 1222, 1234
BstMWI GCNNNNNNNGC 3 cut(s) 50, 55, 64
BstNI CCWGG 1 cut(s) 1185
BstPI GGTNACC 1 cut(s) 181
BstSCI CCNGG 3 cut(s) 60, 310, 1183
BstSFI CTRYAG 2 cut(s) 95, 1266
BstUI CGCG 1 cut(s) 140
BstV1I GCAGC 2 cut(s) 78, 1234
BstV2I GAAGAC 2 cut(s) 691, 807
BsuRI GGCC 4 cut(s) 604, 743, 785, 1264
BtgZI GCGATG 1 cut(s) 190
BtsCI GGATG 2 cut(s) 1129, 1174
BtsIMutI CAGTG 3 cut(s) 365, 523, 1092
BveI ACCTGC 1 cut(s) 74
Cac8I GCNNGC 4 cut(s) 29, 51, 211, 871
CaiI CAGNNNCTG 2 cut(s) 535, 1265
CfoI GCGC 2 cut(s) 39, 720
Cfr10I RCCGGY 2 cut(s) 185, 1295
Cfr13I GGNCC 5 cut(s) 158, 259, 784, 1100, 1262
CsiI ACCWGGT 1 cut(s) 1183
Csp6I GTAC 1 cut(s) 817
CspAI ACCGGT 2 cut(s) 185, 1295
CspCI CAANNNNNGTGG 2 cut(s) 819, 854
CviAII CATG 2 cut(s) 736, 853
CviQI GTAC 1 cut(s) 817
DdeI CTNAG 4 cut(s) 626, 708, 1105, 1286
DpnI GATC 5 cut(s) 146, 227, 857, 1224, 1236
DpnII GATC 5 cut(s) 144, 225, 855, 1222, 1234
DraIII CACNNNGTG 1 cut(s) 1187
EaeI YGGCCR 1 cut(s) 741
Eam1104I CTCTTC 1 cut(s) 656
EarI CTCTTC 1 cut(s) 656
EciI GGCGGA 1 cut(s) 752
Eco147I AGGCCT 1 cut(s) 604
Eco31I GGTCTC 2 cut(s) 131, 439
Eco47I GGWCC 3 cut(s) 158, 259, 1100
Eco57I CTGAAG 1 cut(s) 463
Eco88I CYCGRG 1 cut(s) 598
Eco91I GGTNACC 1 cut(s) 181
EcoO109I RGGNCCY 2 cut(s) 1100, 1262
EcoO65I GGTNACC 1 cut(s) 181
EcoRII CCWGG 1 cut(s) 1183
FaeI CATG 2 cut(s) 739, 856
FaqI GGGAC 1 cut(s) 1086
FatI CATG 2 cut(s) 735, 852
FauI CCCGC 1 cut(s) 1201
FbaI TGATCA 2 cut(s) 855, 1234
FblI GTMKAC 1 cut(s) 1276
Fnu4HI GCNGC 3 cut(s) 92, 456, 1248
FokI GGATG 2 cut(s) 1136, 1181
Fsp4HI GCNGC 3 cut(s) 92, 456, 1248
FspBI CTAG 5 cut(s) 54, 68, 870, 1079, 1160
GlaI GCGC 2 cut(s) 38, 719
GluI GCNGC 3 cut(s) 92, 456, 1248
GsaI CCCAGC 2 cut(s) 43, 1284
GsuI CTGGAG 1 cut(s) 1172
HaeII RGCGCY 2 cut(s) 40, 721
HaeIII GGCC 4 cut(s) 604, 743, 785, 1264
HapII CCGG 5 cut(s) 61, 186, 221, 311, 1296
HhaI GCGC 2 cut(s) 39, 720
Hin1II CATG 2 cut(s) 739, 856
Hin6I GCGC 2 cut(s) 37, 718
HinP1I GCGC 2 cut(s) 37, 718
HindIII AAGCTT 2 cut(s) 654, 1209
HinfI GANTC 8 cut(s) 101, 175, 196, 217, 307, 622, 1082, 1145
HpaII CCGG 5 cut(s) 61, 186, 221, 311, 1296
HphI GGTGA 4 cut(s) 193, 235, 463, 1199
Hpy166II GTNNAC 4 cut(s) 563, 1040, 1190, 1277
Hpy188I TCNGA 5 cut(s) 17, 237, 259, 363, 645
Hpy188III TCNNGA 6 cut(s) 117, 964, 1079, 1151, 1160, 1226
Hpy8I GTNNAC 4 cut(s) 563, 1040, 1190, 1277
Hpy99I CGWCG 3 cut(s) 21, 24, 109
HpyAV CCTTC 3 cut(s) 508, 607, 612
HpyCH4III ACNGT 3 cut(s) 166, 469, 527
HpyCH4V TGCA 6 cut(s) 31, 192, 515, 538, 610, 1250
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 55, 64
HpyF3I CTNAG 4 cut(s) 626, 708, 1105, 1286
Hsp92II CATG 2 cut(s) 739, 856
HspAI GCGC 2 cut(s) 37, 718
Ksp22I TGATCA 2 cut(s) 855, 1234
Kzo9I GATC 5 cut(s) 144, 225, 855, 1222, 1234
LmnI GCTCC 1 cut(s) 691
Lsp1109I GCAGC 2 cut(s) 78, 1234
LweI GCATC 4 cut(s) 14, 639, 1114, 1259
MabI ACCWGGT 1 cut(s) 1183
MaeI CTAG 5 cut(s) 54, 68, 870, 1079, 1160
MaeIII GTNAC 2 cut(s) 181, 469
MalI GATC 5 cut(s) 146, 227, 857, 1224, 1236
MboI GATC 5 cut(s) 144, 225, 855, 1222, 1234
MboII GAAGA 8 cut(s) 388, 391, 469, 673, 691, 812, 1184, 1229
MfeI CAATTG 1 cut(s) 148
MhlI GDGCHC 2 cut(s) 51, 750
MluCI AATT 7 cut(s) 148, 648, 703, 878, 928, 1132, 1201
MlyI GAGTC 2 cut(s) 110, 1154
MmeI TCCRAC 2 cut(s) 40, 215
MroXI GAANNNNTTC 1 cut(s) 639
MseI TTAA 9 cut(s) 240, 246, 297, 510, 954, 977, 984, 1071, 1200
MspI CCGG 5 cut(s) 61, 186, 221, 311, 1296
MspR9I CCNGG 3 cut(s) 62, 312, 1185
MunI CAATTG 1 cut(s) 148
Mva1269I GAATGC 1 cut(s) 779
MvaI CCWGG 1 cut(s) 1185
MvnI CGCG 1 cut(s) 140
MwoI GCNNNNNNNGC 3 cut(s) 50, 55, 64
NciI CCSGG 2 cut(s) 62, 312
NdeII GATC 5 cut(s) 144, 225, 855, 1222, 1234
NheI GCTAGC 1 cut(s) 869
NlaIII CATG 2 cut(s) 739, 856
NlaIV GGNNCC 3 cut(s) 59, 1102, 1182
NmuCI GTSAC 2 cut(s) 181, 469
PaqCI CACCTGC 1 cut(s) 74
PceI AGGCCT 1 cut(s) 604
PcsI WCGNNNNNNNCGW 1 cut(s) 113
PctI GAATGC 1 cut(s) 779
PdmI GAANNNNTTC 1 cut(s) 639
PfeI GAWTC 6 cut(s) 175, 196, 217, 307, 622, 1082
PflMI CCANNNNNTGG 1 cut(s) 1213
PinAI ACCGGT 2 cut(s) 185, 1295
PkrI GCNGC 3 cut(s) 93, 457, 1249
PleI GAGTC 2 cut(s) 109, 1153
PpsI GAGTC 2 cut(s) 109, 1153
PpuMI RGGWCCY 1 cut(s) 1100
PshBI ATTAAT 1 cut(s) 246
Psp5II RGGWCCY 1 cut(s) 1100
Psp6I CCWGG 1 cut(s) 1183
PspEI GGTNACC 1 cut(s) 181
PspFI CCCAGC 2 cut(s) 39, 1280
PspGI CCWGG 1 cut(s) 1183
PspN4I GGNNCC 3 cut(s) 59, 1102, 1182
PspPI GGNCC 5 cut(s) 158, 259, 784, 1100, 1262
PspPPI RGGWCCY 1 cut(s) 1100
PsrI GAACNNNNNNTAC 2 cut(s) 322, 354
PstNI CAGNNNCTG 2 cut(s) 535, 1265
RsaI GTAC 1 cut(s) 818
RsaNI GTAC 1 cut(s) 817
SaqAI TTAA 9 cut(s) 240, 246, 297, 510, 954, 977, 984, 1071, 1200
SatI GCNGC 3 cut(s) 92, 456, 1248
Sau3AI GATC 5 cut(s) 144, 225, 855, 1222, 1234
Sau96I GGNCC 5 cut(s) 158, 259, 784, 1100, 1262
ScaI AGTACT 1 cut(s) 818
SchI GAGTC 2 cut(s) 110, 1154
ScrFI CCNGG 3 cut(s) 62, 312, 1185
SduI GDGCHC 2 cut(s) 51, 750
SexAI ACCWGGT 1 cut(s) 1183
SfaNI GCATC 4 cut(s) 14, 639, 1114, 1259
SfcI CTRYAG 2 cut(s) 95, 1266
SinI GGWCC 3 cut(s) 158, 259, 1100
SmlI CTYRAG 2 cut(s) 128, 788
SmoI CTYRAG 2 cut(s) 128, 788
Sse9I AATT 7 cut(s) 148, 648, 703, 878, 928, 1132, 1201
SseBI AGGCCT 1 cut(s) 604
SsiI CCGC 4 cut(s) 140, 456, 763, 1194
SspMI CTAG 5 cut(s) 54, 68, 870, 1079, 1160
StuI AGGCCT 1 cut(s) 604
StyD4I CCNGG 3 cut(s) 60, 310, 1183
TaaI ACNGT 3 cut(s) 166, 469, 527
TaqI TCGA 5 cut(s) 116, 250, 633, 732, 894
TasI AATT 7 cut(s) 148, 648, 703, 878, 928, 1132, 1201
TatI WGTACW 1 cut(s) 816
TauI GCSGC 1 cut(s) 458
TfiI GAWTC 6 cut(s) 175, 196, 217, 307, 622, 1082
Tru1I TTAA 9 cut(s) 240, 246, 297, 510, 954, 977, 984, 1071, 1200
Tru9I TTAA 9 cut(s) 240, 246, 297, 510, 954, 977, 984, 1071, 1200
TscAI CASTG 3 cut(s) 372, 530, 1092
TseFI GTSAC 2 cut(s) 181, 469
TseI GCWGC 2 cut(s) 91, 1247
Tsp45I GTSAC 2 cut(s) 181, 469
TspDTI ATGAA 7 cut(s) 270, 278, 490, 786, 891, 1037, 1185
TspRI CASTG 3 cut(s) 372, 530, 1092
Van91I CCANNNNNTGG 1 cut(s) 1213
VpaK11BI GGWCC 3 cut(s) 158, 259, 1100
VspI ATTAAT 1 cut(s) 246
XapI RAATTY 1 cut(s) 1132
XbaI TCTAGA 2 cut(s) 1078, 1159
XmiI GTMKAC 1 cut(s) 1276
XmnI GAANNNNTTC 1 cut(s) 639
XspI CTAG 5 cut(s) 54, 68, 870, 1079, 1160
ZrmI AGTACT 1 cut(s) 818
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.