Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G09315 |
| fragaria_vesca | FvH4_2g17040 |
| malus_domestica | MD10G1143100.v1.1 |
| prunus_persica | Prupe.8G182100_v2.0.a1 Prupe.8G182100_v2.0.a1 |
| pyrus_communis | pycom05g13780 pycom10g12300 |
| rosa_chinensis | RchiOBHm_Chr6g0281221 |
| rosa_laevigata | RLG00000012983 |
| rosa_multiflora | Rmu_sc0000847.1_g000051 Rmu_sc0027531.1_g000002 |
| rosa_roxburghii | Rroxscaffold_7G00187210 |
| rosa_rugosa | Rorug06G0139800 |
| rosa_samantha | Rh6AG251700 Rh6BG255000 Rh6CG254500 Rh6DG246300 |
| rosa_wichuraiana | Rw6G021860 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 10 |
| AfaI | GTAC | 1 cut(s) | 212 |
| AgsI | TTSAA | 3 cut(s) | 188, 197, 217 |
| Alw26I | GTCTC | 1 cut(s) | 338 |
| AoxI | GGCC | 1 cut(s) | 128 |
| ApoI | RAATTY | 1 cut(s) | 10 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 337, 369 |
| AseI | ATTAAT | 2 cut(s) | 164, 321 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 105 |
| AsuII | TTCGAA | 1 cut(s) | 99 |
| AsuNHI | GCTAGC | 1 cut(s) | 170 |
| BbsI | GAAGAC | 2 cut(s) | 88, 108 |
| BccI | CCATC | 1 cut(s) | 331 |
| BcoDI | GTCTC | 1 cut(s) | 338 |
| BfaI | CTAG | 2 cut(s) | 171, 329 |
| BfmI | CTRYAG | 1 cut(s) | 124 |
| BmsI | GCATC | 1 cut(s) | 364 |
| BmtI | GCTAGC | 1 cut(s) | 174 |
| BpiI | GAAGAC | 2 cut(s) | 88, 108 |
| Bpu14I | TTCGAA | 1 cut(s) | 99 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 48, 78 |
| Bse3DI | GCAATG | 3 cut(s) | 71, 118, 181 |
| BseGI | GGATG | 2 cut(s) | 302, 379 |
| BseMI | GCAATG | 3 cut(s) | 71, 118, 181 |
| BshFI | GGCC | 1 cut(s) | 130 |
| BslFI | GGGAC | 1 cut(s) | 407 |
| BsmAI | GTCTC | 1 cut(s) | 338 |
| BsmFI | GGGAC | 1 cut(s) | 407 |
| BsnI | GGCC | 1 cut(s) | 130 |
| Bsp119I | TTCGAA | 1 cut(s) | 99 |
| BspANI | GGCC | 1 cut(s) | 130 |
| BspOI | GCTAGC | 1 cut(s) | 174 |
| BspT104I | TTCGAA | 1 cut(s) | 99 |
| BsrDI | GCAATG | 3 cut(s) | 71, 118, 181 |
| Bst4CI | ACNGT | 4 cut(s) | 28, 64, 144, 433 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 257 |
| BstBI | TTCGAA | 1 cut(s) | 99 |
| BstC8I | GCNNGC | 1 cut(s) | 172 |
| BstF5I | GGATG | 2 cut(s) | 302, 379 |
| BstMAI | GTCTC | 1 cut(s) | 338 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 257 |
| BstSFI | CTRYAG | 1 cut(s) | 124 |
| BstV2I | GAAGAC | 2 cut(s) | 88, 108 |
| BsuRI | GGCC | 1 cut(s) | 130 |
| BtsCI | GGATG | 2 cut(s) | 302, 379 |
| BtsIMutI | CAGTG | 2 cut(s) | 140, 438 |
| Cac8I | GCNNGC | 1 cut(s) | 172 |
| Csp6I | GTAC | 1 cut(s) | 211 |
| CviJI | RGCY | 2 cut(s) | 130, 238 |
| CviKI_1 | RGCY | 2 cut(s) | 130, 238 |
| CviQI | GTAC | 1 cut(s) | 211 |
| FaiI | YATR | 4 cut(s) | 32, 68, 111, 390 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 183, 215 |
| FaqI | GGGAC | 1 cut(s) | 407 |
| FokI | GGATG | 2 cut(s) | 289, 386 |
| FspBI | CTAG | 2 cut(s) | 171, 329 |
| HaeIII | GGCC | 1 cut(s) | 130 |
| HinfI | GANTC | 2 cut(s) | 332, 395 |
| Hpy166II | GTNNAC | 1 cut(s) | 436 |
| Hpy188I | TCNGA | 1 cut(s) | 151 |
| Hpy188III | TCNNGA | 1 cut(s) | 329 |
| Hpy8I | GTNNAC | 1 cut(s) | 436 |
| HpyAV | CCTTC | 1 cut(s) | 309 |
| HpyCH4III | ACNGT | 4 cut(s) | 28, 64, 144, 433 |
| HpyCH4IV | ACGT | 1 cut(s) | 105 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 257 |
| HpySE526I | ACGT | 1 cut(s) | 105 |
| LmnI | GCTCC | 1 cut(s) | 115 |
| LpnPI | CCDG | 7 cut(s) | 77, 112, 119, 252, 333, 356, 386 |
| LweI | GCATC | 1 cut(s) | 364 |
| MaeI | CTAG | 2 cut(s) | 171, 329 |
| MaeII | ACGT | 1 cut(s) | 105 |
| MaeIII | GTNAC | 1 cut(s) | 58 |
| MboII | GAAGA | 3 cut(s) | 32, 88, 113 |
| MluCI | AATT | 5 cut(s) | 10, 161, 165, 229, 243 |
| MlyI | GAGTC | 2 cut(s) | 341, 389 |
| MnlI | CCTC | 2 cut(s) | 241, 299 |
| MroXI | GAANNNNTTC | 1 cut(s) | 105 |
| MseI | TTAA | 5 cut(s) | 159, 164, 255, 285, 321 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 257 |
| NheI | GCTAGC | 1 cut(s) | 170 |
| NspV | TTCGAA | 1 cut(s) | 99 |
| PdmI | GAANNNNTTC | 1 cut(s) | 105 |
| PleI | GAGTC | 2 cut(s) | 340, 389 |
| PpsI | GAGTC | 2 cut(s) | 340, 389 |
| PshBI | ATTAAT | 2 cut(s) | 164, 321 |
| RsaI | GTAC | 1 cut(s) | 212 |
| RsaNI | GTAC | 1 cut(s) | 211 |
| SaqAI | TTAA | 5 cut(s) | 159, 164, 255, 285, 321 |
| SchI | GAGTC | 2 cut(s) | 341, 389 |
| SetI | ASST | 6 cut(s) | 96, 108, 138, 291, 301, 352 |
| SfaNI | GCATC | 1 cut(s) | 364 |
| SfcI | CTRYAG | 1 cut(s) | 124 |
| SfuI | TTCGAA | 1 cut(s) | 99 |
| Sse9I | AATT | 5 cut(s) | 10, 161, 165, 229, 243 |
| SspMI | CTAG | 2 cut(s) | 171, 329 |
| TaaI | ACNGT | 4 cut(s) | 28, 64, 144, 433 |
| TaiI | ACGT | 1 cut(s) | 108 |
| TaqI | TCGA | 2 cut(s) | 99, 335 |
| TasI | AATT | 5 cut(s) | 10, 161, 165, 229, 243 |
| TatI | WGTACW | 1 cut(s) | 210 |
| Tru1I | TTAA | 5 cut(s) | 159, 164, 255, 285, 321 |
| Tru9I | TTAA | 5 cut(s) | 159, 164, 255, 285, 321 |
| TscAI | CASTG | 2 cut(s) | 147, 438 |
| TspDTI | ATGAA | 2 cut(s) | 98, 291 |
| TspRI | CASTG | 2 cut(s) | 147, 438 |
| VspI | ATTAAT | 2 cut(s) | 164, 321 |
| XapI | RAATTY | 1 cut(s) | 10 |
| XbaI | TCTAGA | 1 cut(s) | 328 |
| XmnI | GAANNNNTTC | 1 cut(s) | 105 |
| XspI | CTAG | 2 cut(s) | 171, 329 |