Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007691

Physical Location & Seq

Genomic Coordinates Reverse (-)

3038978 .. 3041206

Gene Structure 2229 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G09790.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGCCACATGGAACGCATCCTCCCCTGCGGCGTCTCCTTGCTCATCGAGGCGACGAACGAAAGCTCCAGCGAGACGCCCTTCCTCCGAATCTCCACCACCGAGGAAGATGAAATCAATGGCTGAGATAATGGCGAAATCTGTCCCTGTGGTTGAACAAGAAGAAGAAGAAGACGAAGACAGCTACAGTAACGTCACCTGCGAGAAATGTGGTTCTGGAGAAGGAGACGATGAGCTTCTTCTCTGTGACAAATGCGATAGAGGCTTTCACATGAAATGCCTTAGACCCATTGTTGTTCGTGTCCCCATTGGAACTTGGCTTTGTGTCGATTGTTCCGACCAACGACCTGTAAGAAGGTTATCTCAGAAGAAGATTTTACATTTCTTTCGGATTGAGAAGCATACTCATCAAACAGACAAATTGGAATTGAGTCAAGAAACTAGAAAGCGGAGACGATCTTGCTCTTTGACAGTGAAGAAAAGAAGGAGAAAACTCTTACCTTTGGTTCCATCAGAAGATCCTGATCAGAGGCTTGCACAAATGGGAACACTTGCTTCTGCATTAACGGCATTGGGTATCAAATACAGCGATGGTTTAAATTATGTTCCCGGAATGGCTCCTCGGTCTGCAAATCAATCCAAGTTAGAGAAAGGTGGGATGCAGGTGCTATGCAAAGAAGATTTAGAGACATTGGAACAATGTCAATCTATGTATAGACGAGGAGAATGCCCTCCTCTCGTTGTGGTATTTGATCCGCTTGAAGGTTACACAGTTGAAGCAGATGGTCCTATTAAGGACTTAACATTCATAGCTGAATATACAGGGGATGTTGATTACTTGAAAAACCGAGAAAAAGACGATTGTGACAGCATCATGACTCTCCTTTTATCAGAAGATCCTTCAAAGACTCTTGTTATCTGTCCAGACAAGTTTGGAAACATATCTCGCTTCATTAATGGCATTAACAATCACAATCCGGTTGCTAAGAAGAAGCAGAACTGCAAATGCGTGAGGTATAGCATAAACGGCGAATGTCGAGTTCTTCTAGTGGCTACACGCGATATATCGAAAGGGGAAAGGCTCTATTATGACTACAATGGTTATGAACATGAGTATCCTACTCATCACTTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009292 GO:0009294 GO:0009507 GO:0009536 GO:0009555 GO:0009889 GO:0009987 GO:0010556 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0046976 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051276 GO:0051704 GO:0051726 GO:0060255 GO:0065007 GO:0070734 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD SET

Protein Analysis

378

Amino Acids

42.9

Weight (kDa)

8.36

Isoelectric Point (pI)

60.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	67 - 111	7e-10	PHD-finger
SET	PF00856	256 - 367	4e-10	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007691)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09790 AT5G09790
fragaria_vesca	FvH4_1g24041 FvH4_1g24041 FvH4_1g24041 FvH4_1g24041
malus_domestica	MD01G1012000.v1.1 MD15G1338000.v1.1
pyrus_communis	pycom01g04290 pycom15g28850
rosa_chinensis	RchiOBHm_Chr2g0120191
rosa_laevigata	RLG00000018530 RLG00000018538
rosa_multiflora	Rmu_sc0000394.1_g000029 Rmu_sc0004700.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123630
rosa_rugosa	Rorug02G0227600
rosa_samantha	Rh2AG284200 Rh2AG284300 Rh2BG295400 Rh2CG272800 Rh2DG309200 Rh2DG309300
rosa_wichuraiana	Rw2G022770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	206, 652
Acc36I	ACCTGC	2 cut(s)	206, 652
AccII	CGCG	1 cut(s)	1059
AciI	CCGC	3 cut(s)	29, 448, 755
AclWI	GGATC	3 cut(s)	512, 746, 890
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	2 cut(s)	32, 76
AfiI	CCNNNNNNNGG	1 cut(s)	761
AgsI	TTSAA	5 cut(s)	155, 761, 776, 841, 903
AloI	GAACNNNNNNTCC	3 cut(s)	37, 49, 81
AluBI	AGCT	4 cut(s)	65, 183, 235, 812
AluI	AGCT	4 cut(s)	65, 183, 235, 812
Alw26I	GTCTC	5 cut(s)	39, 67, 219, 445, 680
AlwI	GGATC	3 cut(s)	512, 746, 890
AoxI	GGCC	1 cut(s)	3
AseI	ATTAAT	1 cut(s)	954
AspS9I	GGNCC	1 cut(s)	785
AsuC2I	CCSGG	1 cut(s)	609
AsuHPI	GGTGA	1 cut(s)	187
AvaII	GGWCC	1 cut(s)	785
BaeI	ACNNNNGTAYC	2 cut(s)	1097, 1130
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	2 cut(s)	177, 183
BccI	CCATC	3 cut(s)	517, 584, 776
BceAI	ACGGC	2 cut(s)	582, 1042
BcgI	CGANNNNNNTGC	2 cut(s)	708, 742
BciVI	GTATCC	1 cut(s)	1125
BclI	TGATCA	1 cut(s)	523
BcnI	CCSGG	1 cut(s)	609
BcoDI	GTCTC	5 cut(s)	39, 67, 219, 445, 680
BfaI	CTAG	2 cut(s)	441, 1046
BfmI	CTRYAG	1 cut(s)	184
BfuAI	ACCTGC	2 cut(s)	206, 652
BfuI	GTATCC	1 cut(s)	1125
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
Bme1390I	CCNGG	1 cut(s)	609
Bme18I	GGWCC	1 cut(s)	785
BmgT120I	GGNCC	1 cut(s)	785
BmiI	GGNNCC	2 cut(s)	507, 618
BmrFI	CCNGG	1 cut(s)	609
BmsI	GCATC	3 cut(s)	26, 648, 879
BpiI	GAAGAC	2 cut(s)	177, 183
BpmI	CTGGAG	2 cut(s)	51, 237
BpuMI	CCSGG	1 cut(s)	609
BsaBI	GATNNNNATC	1 cut(s)	522
BsaHI	GRCGYC	2 cut(s)	32, 76
BsaJI	CCNNGG	2 cut(s)	101, 620
BsaWI	WCCGGW	1 cut(s)	976
BsaXI	ACNNNNNCTCC	4 cut(s)	5, 35, 49, 79
Bsc4I	CCNNNNNNNGG	1 cut(s)	761
Bse8I	GATNNNNATC	1 cut(s)	522
BseDI	CCNNGG	2 cut(s)	101, 620
BseGI	GGATG	3 cut(s)	17, 663, 832
BseJI	GATNNNNATC	1 cut(s)	522
BseLI	CCNNNNNNNGG	1 cut(s)	761
BseMII	CTCAG	2 cut(s)	114, 377
BseRI	GAGGAG	3 cut(s)	609, 723, 735
Bsh1236I	CGCG	1 cut(s)	1059
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	2 cut(s)	609, 977
BslFI	GGGAC	2 cut(s)	128, 287
BslI	CCNNNNNNNGG	1 cut(s)	761
BsmAI	GTCTC	5 cut(s)	39, 67, 219, 445, 680
BsmBI	CGTCTC	4 cut(s)	39, 67, 219, 445
BsmFI	GGGAC	2 cut(s)	128, 287
BsmI	GAATGC	1 cut(s)	731
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	5 cut(s)	455, 517, 523, 751, 895
BspACI	CCGC	3 cut(s)	29, 448, 755
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	115, 376
BspFNI	CGCG	1 cut(s)	1059
BspHI	TCATGA	1 cut(s)	873
BspLI	GGNNCC	2 cut(s)	507, 618
BspMI	ACCTGC	2 cut(s)	206, 652
BspPI	GGATC	3 cut(s)	512, 746, 890
BssECI	CCNNGG	2 cut(s)	101, 620
BssMI	GATC	5 cut(s)	455, 517, 523, 751, 895
BssNI	GRCGYC	2 cut(s)	32, 76
Bst4CI	ACNGT	3 cut(s)	188, 472, 772
BstACI	GRCGYC	2 cut(s)	32, 76
BstC8I	GCNNGC	1 cut(s)	534
BstDEI	CTNAG	4 cut(s)	123, 281, 363, 984
BstF5I	GGATG	3 cut(s)	17, 663, 832
BstFNI	CGCG	1 cut(s)	1059
BstKTI	GATC	5 cut(s)	458, 520, 526, 754, 898
BstMAI	GTCTC	5 cut(s)	39, 67, 219, 445, 680
BstMBI	GATC	5 cut(s)	455, 517, 523, 751, 895
BstMWI	GCNNNNNNNGC	3 cut(s)	261, 566, 1026
BstSCI	CCNGG	1 cut(s)	607
BstSFI	CTRYAG	1 cut(s)	184
BstUI	CGCG	1 cut(s)	1059
BstV2I	GAAGAC	2 cut(s)	177, 183
BstX2I	RGATCY	2 cut(s)	517, 895
BstYI	RGATCY	2 cut(s)	517, 895
BsuI	GTATCC	1 cut(s)	1125
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	603
BtsCI	GGATG	3 cut(s)	17, 663, 832
BtsIMutI	CAGTG	1 cut(s)	477
BveI	ACCTGC	2 cut(s)	206, 652
Cac8I	GCNNGC	1 cut(s)	534
CciI	TCATGA	1 cut(s)	873
Cfr13I	GGNCC	1 cut(s)	785
CseI	GACGC	2 cut(s)	21, 84
CviAII	CATG	4 cut(s)	9, 271, 874, 1109
DdeI	CTNAG	4 cut(s)	123, 281, 363, 984
DpnI	GATC	5 cut(s)	457, 519, 525, 753, 897
DpnII	GATC	5 cut(s)	455, 517, 523, 751, 895
DraI	TTTAAA	1 cut(s)	597
EaeI	YGGCCR	1 cut(s)	3
Eco47I	GGWCC	1 cut(s)	785
Esp3I	CGTCTC	4 cut(s)	39, 67, 219, 445
FaeI	CATG	4 cut(s)	12, 274, 877, 1112
FaqI	GGGAC	2 cut(s)	128, 287
FatI	CATG	4 cut(s)	8, 270, 873, 1108
FbaI	TGATCA	1 cut(s)	523
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	3 cut(s)	4, 670, 839
Fsp4HI	GCNGC	1 cut(s)	30
FspBI	CTAG	2 cut(s)	441, 1046
GluI	GCNGC	1 cut(s)	30
GsuI	CTGGAG	2 cut(s)	51, 237
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	609, 977
HgaI	GACGC	2 cut(s)	21, 84
Hin1I	GRCGYC	2 cut(s)	32, 76
Hin1II	CATG	4 cut(s)	12, 274, 877, 1112
HinfI	GANTC	4 cut(s)	89, 430, 877, 907
HpaII	CCGG	2 cut(s)	609, 977
HphI	GGTGA	1 cut(s)	187
Hpy188I	TCNGA	8 cut(s)	88, 337, 366, 390, 514, 528, 892, 1136
Hpy188III	TCNNGA	5 cut(s)	216, 434, 521, 874, 923
Hpy99I	CGWCG	1 cut(s)	57
HpyAV	CCTTC	6 cut(s)	90, 215, 348, 477, 755, 909
HpyCH4III	ACNGT	3 cut(s)	188, 472, 772
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	6 cut(s)	536, 560, 629, 661, 672, 1002
HpyF10VI	GCNNNNNNNGC	3 cut(s)	261, 566, 1026
HpyF3I	CTNAG	4 cut(s)	123, 281, 363, 984
HpySE526I	ACGT	1 cut(s)	192
Hsp92I	GRCGYC	2 cut(s)	32, 76
Hsp92II	CATG	4 cut(s)	12, 274, 877, 1112
Ksp22I	TGATCA	1 cut(s)	523
Kzo9I	GATC	5 cut(s)	455, 517, 523, 751, 895
LmnI	GCTCC	2 cut(s)	70, 622
LweI	GCATC	3 cut(s)	26, 648, 879
MaeI	CTAG	2 cut(s)	441, 1046
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	5 cut(s)	188, 193, 245, 764, 863
MalI	GATC	5 cut(s)	457, 519, 525, 753, 897
MboI	GATC	5 cut(s)	455, 517, 523, 751, 895
MflI	RGATCY	2 cut(s)	517, 895
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	419, 425, 598
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	439, 871, 901
MmeI	TCCRAC	1 cut(s)	360
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	6 cut(s)	563, 596, 792, 800, 954, 963
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	609, 977
MspR9I	CCNGG	1 cut(s)	609
Mva1269I	GAATGC	1 cut(s)	731
MvnI	CGCG	1 cut(s)	1059
MwoI	GCNNNNNNNGC	3 cut(s)	261, 566, 1026
NciI	CCSGG	1 cut(s)	609
NdeII	GATC	5 cut(s)	455, 517, 523, 751, 895
NlaIII	CATG	4 cut(s)	12, 274, 877, 1112
NlaIV	GGNNCC	2 cut(s)	507, 618
NmuCI	GTSAC	3 cut(s)	193, 245, 863
PagI	TCATGA	1 cut(s)	873
PaqCI	CACCTGC	2 cut(s)	206, 652
PcsI	WCGNNNNNNNCGW	2 cut(s)	198, 333
PctI	GAATGC	1 cut(s)	731
PfeI	GAWTC	1 cut(s)	89
PfoI	TCCNGGA	1 cut(s)	607
PkrI	GCNGC	1 cut(s)	31
PleI	GAGTC	3 cut(s)	438, 871, 901
PpsI	GAGTC	3 cut(s)	438, 871, 901
PshBI	ATTAAT	1 cut(s)	954
PspN4I	GGNNCC	2 cut(s)	507, 618
PspPI	GGNCC	1 cut(s)	785
PsuI	RGATCY	2 cut(s)	517, 895
SaqAI	TTAA	6 cut(s)	563, 596, 792, 800, 954, 963
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	5 cut(s)	455, 517, 523, 751, 895
Sau96I	GGNCC	1 cut(s)	785
SchI	GAGTC	3 cut(s)	439, 871, 901
ScrFI	CCNGG	1 cut(s)	609
SfaNI	GCATC	3 cut(s)	26, 648, 879
SfcI	CTRYAG	1 cut(s)	184
SinI	GGWCC	1 cut(s)	785
Sse9I	AATT	3 cut(s)	419, 425, 598
SsiI	CCGC	3 cut(s)	29, 448, 755
SspMI	CTAG	2 cut(s)	441, 1046
StyD4I	CCNGG	1 cut(s)	607
TaaI	ACNGT	3 cut(s)	188, 472, 772
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	4 cut(s)	47, 327, 1036, 1067
TaqII	GACCGA	1 cut(s)	612
TasI	AATT	3 cut(s)	419, 425, 598
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	6 cut(s)	563, 596, 792, 800, 954, 963
Tru9I	TTAA	6 cut(s)	563, 596, 792, 800, 954, 963
TscAI	CASTG	1 cut(s)	477
TseFI	GTSAC	3 cut(s)	193, 245, 863
Tsp45I	GTSAC	3 cut(s)	193, 245, 863
TspDTI	ATGAA	5 cut(s)	125, 287, 796, 940, 1119
TspRI	CASTG	1 cut(s)	477
VpaK11BI	GGWCC	1 cut(s)	785
VspI	ATTAAT	1 cut(s)	954
XspI	CTAG	2 cut(s)	441, 1046

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.