Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007691

Physical Location & Seq

Genomic Coordinates Forward (+)

22490756 .. 22491616

Gene Structure 861 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0227600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGTTGATTGGCAATCTGTTGGGTGGATTCTTGGACTATGACAAGAAGGAGTTTAAGAAGGGGGTCAATAGGGTTTTGTTCACCCATGACACATCCAAACCTATCCTGCTTGAAAGAAGAGTCTTTCTTGATACCGGAGTTGAACCTGTATTGCAATTCCAGTTCGAGCATCTGCGGGGGCGATGTTCTCAGTGTGGTTTGGTCACACATGCCGGAATTGCTTGTGAGGAGCCAACTGCAGTCAACCCTACTTCCAGGGTTCTTCACTTTCCAGGAGGTTCGACCTCAGGGAATTCCTTTGCTTTTTCTGCCAAGAGCAAGGGAGACCTTCTCTATCCTTCCCAGGTCATTCCAAAGAAGAAGAGACCTGCTTTTCGCCGAGTGGAGCGTCTGAACTCTGATTCTCCTCCTCCCCTTGATCAGGTTCCAACTGAAATCAGTCCTACTTCTGCGGGTAGTCCTTTGGAACACAGGTTGGAGAGTACTGGGGCCTCAGGTGAGGAACCTGTTATGGACGTTTCTTGTGATCTTGTTGTCCCTACAGATATGCAGAAGACACAGATTGATCTGGTTTCCAAGAAACGGGAACGGAGCGGTGCTAACCATCCTTCTCCCAAGAAGTTCAAAACAATCTTGGGTGGCAAGATTCCTACACTGCAGGCGGAGGCACTTGGCCTCATTGAAGAGGATGGTGACCTTACTTTGGTCACTCTGAAGAAGAGGTCTGGTAAGCCTCTTGGAAGCAAGAATAAAGCTCAGAGTGTCAATAAGAAGTTTGGTGGTACTCCTCTGAAGATCACTTACCCTACTAGCAATGGAACAGTCCCCAGCCCTAGCGACAAGGGCAAAGGAAAGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009292 GO:0009294 GO:0009507 GO:0009536 GO:0009555 GO:0009889 GO:0009987 GO:0010556 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0046976 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051276 GO:0051704 GO:0051726 GO:0060255 GO:0065007 GO:0070734 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD SET

Protein Analysis

286

Amino Acids

30.96

Weight (kDa)

9.53

Isoelectric Point (pI)

49.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCHC_4	PF14392	30 - 76	1.1e-08	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007691)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09790 AT5G09790
fragaria_vesca	FvH4_1g24041 FvH4_1g24041 FvH4_1g24041 FvH4_1g24041
malus_domestica	MD01G1012000.v1.1 MD15G1338000.v1.1
pyrus_communis	pycom01g04290 pycom15g28850
rosa_chinensis	RchiOBHm_Chr2g0120191
rosa_laevigata	RLG00000018530 RLG00000018538
rosa_multiflora	Rmu_sc0000394.1_g000029 Rmu_sc0004700.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123630
rosa_rugosa	Rorug02G0227600
rosa_samantha	Rh2AG284200 Rh2AG284300 Rh2BG295400 Rh2CG272800 Rh2DG309200 Rh2DG309300
rosa_wichuraiana	Rw2G022770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	376
AccBSI	CCGCTC	1 cut(s)	594
AciI	CCGC	4 cut(s)	175, 452, 594, 662
AcsI	RAATTY	1 cut(s)	292
AcuI	CTGAAG	2 cut(s)	734, 812
AfaI	GTAC	2 cut(s)	484, 784
AfiI	CCNNNNNNNGG	3 cut(s)	421, 582, 703
AgsI	TTSAA	4 cut(s)	113, 143, 625, 683
AjnI	CCWGG	3 cut(s)	254, 271, 342
AluBI	AGCT	1 cut(s)	755
AluI	AGCT	1 cut(s)	755
Alw26I	GTCTC	2 cut(s)	318, 358
AoxI	GGCC	2 cut(s)	489, 673
ApoI	RAATTY	1 cut(s)	292
ArsI	GACNNNNNNTTYG	2 cut(s)	357, 389
AspS9I	GGNCC	1 cut(s)	489
AsuHPI	GGTGA	3 cut(s)	73, 509, 704
AxyI	CCTNAGG	2 cut(s)	286, 493
BaeI	ACNNNNGTAYC	2 cut(s)	123, 156
BarI	GAAGNNNNNNTAC	2 cut(s)	785, 817
BbsI	GAAGAC	1 cut(s)	560
BccI	CCATC	2 cut(s)	612, 683
BciT130I	CCWGG	3 cut(s)	256, 273, 344
BclI	TGATCA	1 cut(s)	418
BcoDI	GTCTC	2 cut(s)	318, 358
BfaI	CTAG	2 cut(s)	810, 834
BfmI	CTRYAG	3 cut(s)	237, 540, 656
BfuAI	ACCTGC	1 cut(s)	376
BmcAI	AGTACT	1 cut(s)	484
Bme1390I	CCNGG	3 cut(s)	256, 273, 344
BmgT120I	GGNCC	1 cut(s)	489
BmiI	GGNNCC	4 cut(s)	231, 426, 490, 504
BmrFI	CCNGG	3 cut(s)	256, 273, 344
BmrI	ACTGGG	1 cut(s)	495
BmsI	GCATC	1 cut(s)	178
BmuI	ACTGGG	1 cut(s)	495
BpiI	GAAGAC	1 cut(s)	560
BplI	GAGNNNNNCTC	2 cut(s)	315, 347
BsaI	GGTCTC	2 cut(s)	318, 358
BsaJI	CCNNGG	2 cut(s)	255, 342
BsaWI	WCCGGW	1 cut(s)	134
Bsc4I	CCNNNNNNNGG	3 cut(s)	421, 582, 703
Bse1I	ACTGG	2 cut(s)	160, 490
Bse21I	CCTNAGG	2 cut(s)	286, 493
Bse3DI	GCAATG	1 cut(s)	820
BseBI	CCWGG	3 cut(s)	256, 273, 344
BseDI	CCNNGG	2 cut(s)	255, 342
BseGI	GGATG	3 cut(s)	92, 604, 694
BseLI	CCNNNNNNNGG	3 cut(s)	421, 582, 703
BseMI	GCAATG	1 cut(s)	820
BseMII	CTCAG	4 cut(s)	203, 300, 507, 770
BseNI	ACTGG	2 cut(s)	160, 490
BseRI	GAGGAG	4 cut(s)	242, 396, 399, 777
BseYI	CCCAGC	1 cut(s)	827
BshFI	GGCC	2 cut(s)	491, 675
BsiSI	CCGG	2 cut(s)	135, 213
BslFI	GGGAC	2 cut(s)	521, 809
BslI	CCNNNNNNNGG	3 cut(s)	421, 582, 703
BsmAI	GTCTC	2 cut(s)	318, 358
BsmFI	GGGAC	2 cut(s)	521, 809
BsnI	GGCC	2 cut(s)	491, 675
Bso31I	GGTCTC	2 cut(s)	318, 358
Bsp143I	GATC	4 cut(s)	418, 526, 565, 795
BspACI	CCGC	4 cut(s)	175, 452, 594, 662
BspANI	GGCC	2 cut(s)	491, 675
BspCNI	CTCAG	4 cut(s)	202, 299, 506, 769
BspLI	GGNNCC	4 cut(s)	231, 426, 490, 504
BspMAI	CTGCAG	2 cut(s)	241, 660
BspMI	ACCTGC	1 cut(s)	376
BspTNI	GGTCTC	2 cut(s)	318, 358
BsrBI	CCGCTC	1 cut(s)	594
BsrDI	GCAATG	1 cut(s)	820
BsrI	ACTGG	2 cut(s)	160, 490
BssECI	CCNNGG	2 cut(s)	255, 342
BssMI	GATC	4 cut(s)	418, 526, 565, 795
Bst2UI	CCWGG	3 cut(s)	256, 273, 344
Bst4CI	ACNGT	1 cut(s)	823
Bst6I	CTCTTC	4 cut(s)	112, 356, 678, 713
BstC8I	GCNNGC	1 cut(s)	660
BstDEI	CTNAG	4 cut(s)	189, 286, 493, 756
BstEII	GGTNACC	1 cut(s)	692
BstENI	CCTNNNNNAGG	1 cut(s)	419
BstF5I	GGATG	3 cut(s)	92, 604, 694
BstKTI	GATC	4 cut(s)	421, 529, 568, 798
BstMAI	GTCTC	2 cut(s)	318, 358
BstMBI	GATC	4 cut(s)	418, 526, 565, 795
BstMWI	GCNNNNNNNGC	3 cut(s)	218, 308, 843
BstNI	CCWGG	3 cut(s)	256, 273, 344
BstNSI	RCATGY	1 cut(s)	212
BstPI	GGTNACC	1 cut(s)	692
BstSCI	CCNGG	3 cut(s)	254, 271, 342
BstSFI	CTRYAG	3 cut(s)	237, 540, 656
BstV2I	GAAGAC	1 cut(s)	560
Bsu36I	CCTNAGG	2 cut(s)	286, 493
BsuRI	GGCC	2 cut(s)	491, 675
BtgZI	GCGATG	1 cut(s)	196
BtsCI	GGATG	3 cut(s)	92, 604, 694
BtsI	GCAGTG	1 cut(s)	653
BtsIMutI	CAGTG	2 cut(s)	197, 653
BveI	ACCTGC	1 cut(s)	376
Cac8I	GCNNGC	1 cut(s)	660
Cfr13I	GGNCC	1 cut(s)	489
CseI	GACGC	1 cut(s)	377
Csp6I	GTAC	2 cut(s)	483, 783
CviAII	CATG	2 cut(s)	86, 209
CviJI	RGCY	6 cut(s)	232, 491, 675, 733, 755, 831
CviKI_1	RGCY	6 cut(s)	232, 491, 675, 733, 755, 831
CviQI	GTAC	2 cut(s)	483, 783
DdeI	CTNAG	4 cut(s)	189, 286, 493, 756
DpnI	GATC	4 cut(s)	420, 528, 567, 797
DpnII	GATC	4 cut(s)	418, 526, 565, 795
Eam1104I	CTCTTC	4 cut(s)	112, 356, 678, 713
EarI	CTCTTC	4 cut(s)	112, 356, 678, 713
EciI	GGCGGA	1 cut(s)	677
Eco31I	GGTCTC	2 cut(s)	318, 358
Eco57I	CTGAAG	2 cut(s)	734, 812
Eco81I	CCTNAGG	2 cut(s)	286, 493
Eco91I	GGTNACC	1 cut(s)	692
EcoNI	CCTNNNNNAGG	1 cut(s)	419
EcoO109I	RGGNCCY	1 cut(s)	489
EcoO65I	GGTNACC	1 cut(s)	692
EcoRI	GAATTC	1 cut(s)	292
EcoRII	CCWGG	3 cut(s)	254, 271, 342
FaeI	CATG	2 cut(s)	89, 212
FaiI	YATR	5 cut(s)	39, 87, 210, 512, 548
FaqI	GGGAC	2 cut(s)	521, 809
FatI	CATG	2 cut(s)	85, 208
FauI	CCCGC	2 cut(s)	168, 445
FbaI	TGATCA	1 cut(s)	418
FokI	GGATG	3 cut(s)	79, 591, 701
FspBI	CTAG	2 cut(s)	810, 834
GsaI	CCCAGC	1 cut(s)	831
HaeIII	GGCC	2 cut(s)	491, 675
HapII	CCGG	2 cut(s)	135, 213
HgaI	GACGC	1 cut(s)	377
Hin1II	CATG	2 cut(s)	89, 212
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HinfI	GANTC	4 cut(s)	27, 120, 401, 646
HpaII	CCGG	2 cut(s)	135, 213
HphI	GGTGA	3 cut(s)	73, 509, 704
Hpy166II	GTNNAC	2 cut(s)	81, 244
Hpy188I	TCNGA	5 cut(s)	393, 400, 714, 759, 792
Hpy188III	TCNNGA	1 cut(s)	128
Hpy8I	GTNNAC	2 cut(s)	81, 244
HpyAV	CCTTC	5 cut(s)	40, 52, 338, 348, 618
HpyCH4III	ACNGT	1 cut(s)	823
HpyCH4IV	ACGT	1 cut(s)	516
HpyCH4V	TGCA	4 cut(s)	154, 239, 550, 658
HpyF10VI	GCNNNNNNNGC	3 cut(s)	218, 308, 843
HpyF3I	CTNAG	4 cut(s)	189, 286, 493, 756
HpySE526I	ACGT	1 cut(s)	516
Hsp92II	CATG	2 cut(s)	89, 212
Ksp22I	TGATCA	1 cut(s)	418
Kzo9I	GATC	4 cut(s)	418, 526, 565, 795
LmnI	GCTCC	3 cut(s)	229, 385, 591
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	2 cut(s)	810, 834
MaeII	ACGT	1 cut(s)	516
MaeIII	GTNAC	3 cut(s)	202, 692, 706
MalI	GATC	4 cut(s)	420, 528, 567, 797
MbiI	CCGCTC	1 cut(s)	594
MboI	GATC	4 cut(s)	418, 526, 565, 795
MboII	GAAGA	9 cut(s)	129, 254, 370, 373, 565, 695, 727, 730, 805
MluCI	AATT	3 cut(s)	155, 216, 292
MlyI	GAGTC	1 cut(s)	129
MmeI	TCCRAC	2 cut(s)	452, 456
MseI	TTAA	1 cut(s)	54
MspI	CCGG	2 cut(s)	135, 213
MspR9I	CCNGG	3 cut(s)	256, 273, 344
MvaI	CCWGG	3 cut(s)	256, 273, 344
MwoI	GCNNNNNNNGC	3 cut(s)	218, 308, 843
NdeII	GATC	4 cut(s)	418, 526, 565, 795
NlaIII	CATG	2 cut(s)	89, 212
NlaIV	GGNNCC	4 cut(s)	231, 426, 490, 504
NmeAIII	GCCGAG	1 cut(s)	404
NmuCI	GTSAC	3 cut(s)	202, 692, 706
NspI	RCATGY	1 cut(s)	212
PfeI	GAWTC	3 cut(s)	27, 401, 646
PfoI	TCCNGGA	1 cut(s)	271
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
Psp6I	CCWGG	3 cut(s)	254, 271, 342
PspEI	GGTNACC	1 cut(s)	692
PspFI	CCCAGC	1 cut(s)	827
PspGI	CCWGG	3 cut(s)	254, 271, 342
PspN4I	GGNNCC	4 cut(s)	231, 426, 490, 504
PspPI	GGNCC	1 cut(s)	489
PstI	CTGCAG	2 cut(s)	241, 660
RsaI	GTAC	2 cut(s)	484, 784
RsaNI	GTAC	2 cut(s)	483, 783
SaqAI	TTAA	1 cut(s)	54
Sau3AI	GATC	4 cut(s)	418, 526, 565, 795
Sau96I	GGNCC	1 cut(s)	489
ScaI	AGTACT	1 cut(s)	484
SchI	GAGTC	1 cut(s)	129
ScrFI	CCNGG	3 cut(s)	256, 273, 344
SfaNI	GCATC	1 cut(s)	178
SfcI	CTRYAG	3 cut(s)	237, 540, 656
Sse9I	AATT	3 cut(s)	155, 216, 292
SsiI	CCGC	4 cut(s)	175, 452, 594, 662
SspMI	CTAG	2 cut(s)	810, 834
StyD4I	CCNGG	3 cut(s)	254, 271, 342
TaaI	ACNGT	1 cut(s)	823
TaiI	ACGT	1 cut(s)	519
TaqI	TCGA	2 cut(s)	165, 281
TasI	AATT	3 cut(s)	155, 216, 292
TatI	WGTACW	1 cut(s)	482
TfiI	GAWTC	3 cut(s)	27, 401, 646
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TscAI	CASTG	2 cut(s)	197, 660
TseFI	GTSAC	3 cut(s)	202, 692, 706
Tsp45I	GTSAC	3 cut(s)	202, 692, 706
TspGWI	ACGGA	1 cut(s)	604
TspRI	CASTG	2 cut(s)	197, 660
XagI	CCTNNNNNAGG	1 cut(s)	419
XapI	RAATTY	1 cut(s)	292
XceI	RCATGY	1 cut(s)	212
XspI	CTAG	2 cut(s)	810, 834
ZrmI	AGTACT	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.