Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0007691

Physical Location & Seq

Genomic Coordinates Forward (+)

15903130 .. 15908118

Gene Structure 4989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g24041.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGACCTCCCTCCACGTCACCACCCCAAAACCCCCCCTCCTCCTTCCTCTTTCCCAAAAGCTCACCATTTCTGTCCCTTCTGCAACAACAAAACACATTCTCTCCAAAATCCCAATTCTGCCCCTCTCCCACCCCCAAATGCCTCCAGCCACCACCTCCCCGGCGGGGCGTCCAGCTCAGCGCCTCATCCGCTTCAACCGCCGCACCTCTGCCCCCCGCCGCCACCTCTCGCCGCCGCAGTCCCCTCCGCCGAAGAAGTTCAAGCCGCTGTCGGAGGTGATGGAGAGGGCGCGGTTCGCCGTCGTGGAGAGAATCGATTACAGTGACGTCAGGTGCGAGCAATGTGGCTCCGGCGACCGAGCTGAGGAGCTGCTTCTCTGTGATAAATGCGATAGAGGCTTCCACATGAAATGTCTCCGGCCGATCGTCGCCATTCTTCCGATTGGATCGTGGCATTGTCCTAAGTGCTCCGGACACAGAAGAGTAAGAAGTTTCTCGCAGAAGAAGATCATCGATTTCTTTCGGATTCAGAAATGTAGTGATGACAAAGACAAATGTGCTTCTCCTCAAGATGCTACTAAGCGCCGCAGACGTTCAGGATCATTAGTGTTGCAGAAGAGAAGAAGAAGACTGTTGCCGTTTATTCCATCAGAGGATCCTGCTCAAAGGCTGAAACAAATGGGTTCCCTTGCCTCTGCTTTAACAGCATTGCACATGGAATTCAGTGATGATCTCACTTACATGCCCGGCATGGCTCCTAGATCTGCAAATCAGTCCAAGTTTGAAGATGGTGGAATGCAGATTCTTTCCAAAGAAGATACGGAGACATTGGAAAACTGCAGAGCCATGTGTAAAAGAGGAGAATGCCCTCCTCTTACAGTTGTTTTCGATGCGTGTGAAGGTTTTACAGTAGAGGCTGACGAGCAGATTAAGGATCTCACTTTAATTGCTGAATATACGGGTGATGTCGATTACATTAAGCATCGGGCAAATGACGACTGTGACAGCATGATGACCCTTCTCTTAGCACTCAATCCATCTAAGAGTCTTGTCATCTGCCCTGATAAACGTGGAAACATTGCTCGATTTATCAATGGAATCAACAACCATTCTCTGGAGGGTAAGAAGAAGCAGAATTGTAAATGTGTGAGATACAGTGTCAACGATGAATGCCGGGTCTTATTGGTTGCTACTCGTGATATTGCTAAAGGAGAGAGGTTATATTATGATTATAATGGATATGAGCATGAATACCCTACTGAACATTTTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009292 GO:0009294 GO:0009507 GO:0009536 GO:0009555 GO:0009889 GO:0009987 GO:0010556 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0046976 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051276 GO:0051704 GO:0051726 GO:0060255 GO:0065007 GO:0070734 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD SET

Protein Analysis

425

Amino Acids

48.0

Weight (kDa)

9.17

Isoelectric Point (pI)

61.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	112 - 156	1e-09	PHD-finger
SET	PF00856	301 - 412	3.5e-11	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007691)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09790 AT5G09790
fragaria_vesca	FvH4_1g24041 FvH4_1g24041 FvH4_1g24041 FvH4_1g24041
malus_domestica	MD01G1012000.v1.1 MD15G1338000.v1.1
pyrus_communis	pycom01g04290 pycom15g28850
rosa_chinensis	RchiOBHm_Chr2g0120191
rosa_laevigata	RLG00000018530 RLG00000018538
rosa_multiflora	Rmu_sc0000394.1_g000029 Rmu_sc0004700.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123630
rosa_rugosa	Rorug02G0227600
rosa_samantha	Rh2AG284200 Rh2AG284300 Rh2BG295400 Rh2CG272800 Rh2DG309200 Rh2DG309300
rosa_wichuraiana	Rw2G022770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1233
AatII	GACGTC	1 cut(s)	330
AccB7I	CCANNNNNTGG	1 cut(s)	1114
AccII	CGCG	1 cut(s)	292
AccIII	TCCGGA	1 cut(s)	470
AclWI	GGATC	5 cut(s)	454, 607, 650, 663, 942
AcoI	YGGCCR	1 cut(s)	419
AcsI	RAATTY	1 cut(s)	719
AcyI	GRCGYC	2 cut(s)	169, 327
AfiI	CCNNNNNNNGG	3 cut(s)	165, 364, 1114
AgsI	TTSAA	3 cut(s)	196, 262, 785
AjiI	CACGTC	1 cut(s)	16
AluBI	AGCT	4 cut(s)	61, 176, 362, 370
AluI	AGCT	4 cut(s)	61, 176, 362, 370
Alw21I	GWGCWC	1 cut(s)	470
Alw26I	GTCTC	2 cut(s)	419, 818
AlwI	GGATC	5 cut(s)	454, 607, 650, 663, 942
Aor13HI	TCCGGA	1 cut(s)	470
AoxI	GGCC	1 cut(s)	419
ApeKI	GCWGC	1 cut(s)	370
ApoI	RAATTY	1 cut(s)	719
Asp700I	GAANNNNTTC	1 cut(s)	257
AspLEI	GCGC	3 cut(s)	183, 292, 585
AsuC2I	CCSGG	3 cut(s)	161, 747, 1175
AsuHPI	GGTGA	4 cut(s)	10, 55, 289, 974
BamHI	GGATCC	1 cut(s)	655
BauI	CACGAG	1 cut(s)	1194
BbsI	GAAGAC	1 cut(s)	634
Bbv12I	GWGCWC	1 cut(s)	470
BbvCI	CCTCAGC	1 cut(s)	363
BbvI	GCAGC	1 cut(s)	357
BccI	CCATC	4 cut(s)	274, 655, 782, 1045
BceAI	ACGGC	2 cut(s)	284, 622
BcnI	CCSGG	3 cut(s)	161, 747, 1175
BcoDI	GTCTC	2 cut(s)	419, 818
BfaI	CTAG	1 cut(s)	759
BfmI	CTRYAG	1 cut(s)	838
BfoI	RGCGCY	2 cut(s)	184, 586
BglII	AGATCT	1 cut(s)	761
BisI	GCNGC	7 cut(s)	202, 220, 233, 236, 266, 371, 586
BlpI	GCTNAGC	1 cut(s)	177
BlsI	GCNGC	7 cut(s)	203, 221, 234, 237, 267, 372, 587
Bme1390I	CCNGG	3 cut(s)	161, 747, 1175
BmgBI	CACGTC	1 cut(s)	16
BmiI	GGNNCC	4 cut(s)	349, 657, 685, 756
BmrFI	CCNGG	3 cut(s)	161, 747, 1175
BmsI	GCATC	3 cut(s)	562, 880, 991
BpiI	GAAGAC	1 cut(s)	634
BpmI	CTGGAG	2 cut(s)	129, 1136
Bpu10I	CCTNAGC	1 cut(s)	363
Bpu1102I	GCTNAGC	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	552
BpuMI	CCSGG	3 cut(s)	161, 747, 1175
Bsa29I	ATCGAT	2 cut(s)	315, 513
BsaHI	GRCGYC	2 cut(s)	169, 327
BsaJI	CCNNGG	1 cut(s)	159
BsaWI	WCCGGW	1 cut(s)	470
BsaXI	ACNNNNNCTCC	4 cut(s)	21, 51, 86, 116
Bsc4I	CCNNNNNNNGG	3 cut(s)	165, 364, 1114
Bse3DI	GCAATG	3 cut(s)	347, 707, 1077
BseAI	TCCGGA	1 cut(s)	470
BseCI	ATCGAT	2 cut(s)	315, 513
BseDI	CCNNGG	1 cut(s)	159
BseGI	GGATG	1 cut(s)	186
BseLI	CCNNNNNNNGG	3 cut(s)	165, 364, 1114
BseMI	GCAATG	3 cut(s)	347, 707, 1077
BseMII	CTCAG	2 cut(s)	191, 354
BseRI	GAGGAG	5 cut(s)	29, 380, 555, 861, 873
BseX3I	CGGCCG	1 cut(s)	419
BseXI	GCAGC	1 cut(s)	357
Bsh1236I	CGCG	1 cut(s)	292
Bsh1285I	CGRYCG	3 cut(s)	358, 422, 426
BshFI	GGCC	1 cut(s)	421
BshVI	ATCGAT	2 cut(s)	315, 513
BsiEI	CGRYCG	3 cut(s)	358, 422, 426
BsiHKAI	GWGCWC	1 cut(s)	470
BsiSI	CCGG	6 cut(s)	161, 351, 418, 471, 747, 1174
BslFI	GGGAC	2 cut(s)	59, 226
BslI	CCNNNNNNNGG	3 cut(s)	165, 364, 1114
BsmAI	GTCTC	2 cut(s)	419, 818
BsmFI	GGGAC	2 cut(s)	59, 226
BsmI	GAATGC	3 cut(s)	801, 869, 1175
BsnI	GGCC	1 cut(s)	421
Bsp1286I	GDGCHC	1 cut(s)	470
Bsp13I	TCCGGA	1 cut(s)	470
Bsp143I	GATC	8 cut(s)	423, 446, 507, 599, 655, 730, 761, 934
Bsp1720I	GCTNAGC	1 cut(s)	177
BspANI	GGCC	1 cut(s)	421
BspCNI	CTCAG	2 cut(s)	190, 355
BspDI	ATCGAT	2 cut(s)	315, 513
BspEI	TCCGGA	1 cut(s)	470
BspFNI	CGCG	1 cut(s)	292
BspLI	GGNNCC	4 cut(s)	349, 657, 685, 756
BspMAI	CTGCAG	1 cut(s)	842
BspPI	GGATC	5 cut(s)	454, 607, 650, 663, 942
BsrDI	GCAATG	3 cut(s)	347, 707, 1077
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	8 cut(s)	423, 446, 507, 599, 655, 730, 761, 934
BssNI	GRCGYC	2 cut(s)	169, 327
BssSI	CACGAG	1 cut(s)	1194
Bst2BI	CACGAG	1 cut(s)	1194
Bst4CI	ACNGT	6 cut(s)	323, 633, 880, 910, 1001, 1157
Bst6I	CTCTTC	2 cut(s)	475, 611
BstACI	GRCGYC	2 cut(s)	169, 327
BstC8I	GCNNGC	1 cut(s)	338
BstDEI	CTNAG	6 cut(s)	177, 363, 462, 579, 1024, 1041
BstF5I	GGATG	1 cut(s)	186
BstFNI	CGCG	1 cut(s)	292
BstH2I	RGCGCY	2 cut(s)	184, 586
BstHHI	GCGC	3 cut(s)	183, 292, 585
BstKTI	GATC	8 cut(s)	426, 449, 510, 602, 658, 733, 764, 937
BstMAI	GTCTC	2 cut(s)	419, 818
BstMBI	GATC	8 cut(s)	423, 446, 507, 599, 655, 730, 761, 934
BstMCI	CGRYCG	3 cut(s)	358, 422, 426
BstMWI	GCNNNNNNNGC	5 cut(s)	189, 198, 296, 396, 704
BstNSI	RCATGY	1 cut(s)	745
BstSCI	CCNGG	3 cut(s)	159, 745, 1173
BstSFI	CTRYAG	1 cut(s)	838
BstUI	CGCG	1 cut(s)	292
BstV1I	GCAGC	1 cut(s)	357
BstV2I	GAAGAC	1 cut(s)	634
BstX2I	RGATCY	3 cut(s)	655, 761, 934
BstYI	RGATCY	3 cut(s)	655, 761, 934
BstZI	CGGCCG	1 cut(s)	419
Bsu15I	ATCGAT	2 cut(s)	315, 513
BsuRI	GGCC	1 cut(s)	421
BsuTUI	ATCGAT	2 cut(s)	315, 513
BtrI	CACGTC	1 cut(s)	16
BtsCI	GGATG	1 cut(s)	186
BtsIMutI	CAGTG	3 cut(s)	328, 730, 1162
Cac8I	GCNNGC	1 cut(s)	338
CfoI	GCGC	3 cut(s)	183, 292, 585
ClaI	ATCGAT	2 cut(s)	315, 513
CseI	GACGC	1 cut(s)	158
CviAII	CATG	7 cut(s)	406, 715, 742, 751, 847, 1009, 1247
DdeI	CTNAG	6 cut(s)	177, 363, 462, 579, 1024, 1041
DpnI	GATC	8 cut(s)	425, 448, 509, 601, 657, 732, 763, 936
DpnII	GATC	8 cut(s)	423, 446, 507, 599, 655, 730, 761, 934
EaeI	YGGCCR	1 cut(s)	419
EagI	CGGCCG	1 cut(s)	419
Eam1104I	CTCTTC	2 cut(s)	475, 611
EarI	CTCTTC	2 cut(s)	475, 611
EciI	GGCGGA	1 cut(s)	237
EclXI	CGGCCG	1 cut(s)	419
Eco52I	CGGCCG	1 cut(s)	419
EcoRI	GAATTC	1 cut(s)	719
FaeI	CATG	7 cut(s)	409, 718, 745, 754, 850, 1012, 1250
FaqI	GGGAC	2 cut(s)	59, 226
FatI	CATG	7 cut(s)	405, 714, 741, 750, 846, 1008, 1246
FauI	CCCGC	2 cut(s)	157, 224
Fnu4HI	GCNGC	7 cut(s)	202, 220, 233, 236, 266, 371, 586
FokI	GGATG	1 cut(s)	173
Fsp4HI	GCNGC	7 cut(s)	202, 220, 233, 236, 266, 371, 586
FspBI	CTAG	1 cut(s)	759
GlaI	GCGC	3 cut(s)	182, 291, 584
GluI	GCNGC	7 cut(s)	202, 220, 233, 236, 266, 371, 586
GsuI	CTGGAG	2 cut(s)	129, 1136
HaeII	RGCGCY	2 cut(s)	184, 586
HaeIII	GGCC	1 cut(s)	421
HapII	CCGG	6 cut(s)	161, 351, 418, 471, 747, 1174
HgaI	GACGC	1 cut(s)	158
HhaI	GCGC	3 cut(s)	183, 292, 585
Hin1I	GRCGYC	2 cut(s)	169, 327
Hin1II	CATG	7 cut(s)	409, 718, 745, 754, 850, 1012, 1250
Hin6I	GCGC	3 cut(s)	181, 290, 583
HinP1I	GCGC	3 cut(s)	181, 290, 583
HincII	GTYRAC	1 cut(s)	1162
HindII	GTYRAC	1 cut(s)	1162
HinfI	GANTC	5 cut(s)	312, 526, 802, 1045, 1098
HpaII	CCGG	6 cut(s)	161, 351, 418, 471, 747, 1174
HphI	GGTGA	4 cut(s)	10, 55, 289, 974
Hpy166II	GTNNAC	1 cut(s)	1162
Hpy188I	TCNGA	5 cut(s)	274, 441, 525, 531, 652
Hpy188III	TCNNGA	5 cut(s)	471, 569, 597, 1115, 1196
Hpy8I	GTNNAC	1 cut(s)	1162
Hpy99I	CGWCG	2 cut(s)	305, 431
HpyAV	CCTTC	4 cut(s)	53, 87, 893, 1028
HpyCH4III	ACNGT	6 cut(s)	323, 633, 880, 910, 1001, 1157
HpyCH4IV	ACGT	4 cut(s)	15, 327, 592, 1069
HpyCH4V	TGCA	6 cut(s)	83, 613, 712, 767, 799, 840
HpyF10VI	GCNNNNNNNGC	5 cut(s)	189, 198, 296, 396, 704
HpyF3I	CTNAG	6 cut(s)	177, 363, 462, 579, 1024, 1041
HpySE526I	ACGT	4 cut(s)	15, 327, 592, 1069
Hsp92I	GRCGYC	2 cut(s)	169, 327
Hsp92II	CATG	7 cut(s)	409, 718, 745, 754, 850, 1012, 1250
HspAI	GCGC	3 cut(s)	181, 290, 583
Kpn2I	TCCGGA	1 cut(s)	470
Kzo9I	GATC	8 cut(s)	423, 446, 507, 599, 655, 730, 761, 934
LmnI	GCTCC	4 cut(s)	353, 367, 473, 760
Lsp1109I	GCAGC	1 cut(s)	357
LweI	GCATC	3 cut(s)	562, 880, 991
MaeI	CTAG	1 cut(s)	759
MaeII	ACGT	4 cut(s)	15, 327, 592, 1069
MaeIII	GTNAC	3 cut(s)	16, 323, 1001
MalI	GATC	8 cut(s)	425, 448, 509, 601, 657, 732, 763, 936
MboI	GATC	8 cut(s)	423, 446, 507, 599, 655, 730, 761, 934
MflI	RGATCY	3 cut(s)	655, 761, 934
MhlI	GDGCHC	1 cut(s)	470
MluCI	AATT	4 cut(s)	114, 719, 945, 1135
MlyI	GAGTC	1 cut(s)	1054
MmeI	TCCRAC	1 cut(s)	252
MroI	TCCGGA	1 cut(s)	470
MroXI	GAANNNNTTC	1 cut(s)	257
MseI	TTAA	4 cut(s)	701, 930, 944, 978
MslI	CAYNNNNRTG	1 cut(s)	740
MspA1I	CMGCKG	1 cut(s)	268
MspI	CCGG	6 cut(s)	161, 351, 418, 471, 747, 1174
MspR9I	CCNGG	3 cut(s)	161, 747, 1175
Mva1269I	GAATGC	3 cut(s)	801, 869, 1175
MvnI	CGCG	1 cut(s)	292
MwoI	GCNNNNNNNGC	5 cut(s)	189, 198, 296, 396, 704
NciI	CCSGG	3 cut(s)	161, 747, 1175
NdeII	GATC	8 cut(s)	423, 446, 507, 599, 655, 730, 761, 934
NlaIII	CATG	7 cut(s)	409, 718, 745, 754, 850, 1012, 1250
NlaIV	GGNNCC	4 cut(s)	349, 657, 685, 756
NmuCI	GTSAC	3 cut(s)	16, 323, 1001
NspI	RCATGY	1 cut(s)	745
PcsI	WCGNNNNNNNCGW	1 cut(s)	333
PctI	GAATGC	3 cut(s)	801, 869, 1175
PdmI	GAANNNNTTC	1 cut(s)	257
PfeI	GAWTC	4 cut(s)	312, 526, 802, 1098
PflMI	CCANNNNNTGG	1 cut(s)	1114
PkrI	GCNGC	7 cut(s)	203, 221, 234, 237, 267, 372, 587
Ple19I	CGATCG	1 cut(s)	426
PleI	GAGTC	1 cut(s)	1053
PpsI	GAGTC	1 cut(s)	1053
PsiI	TTATAA	1 cut(s)	1233
PspN4I	GGNNCC	4 cut(s)	349, 657, 685, 756
PstI	CTGCAG	1 cut(s)	842
PsuI	RGATCY	3 cut(s)	655, 761, 934
PvuI	CGATCG	1 cut(s)	426
RseI	CAYNNNNRTG	1 cut(s)	740
SaqAI	TTAA	4 cut(s)	701, 930, 944, 978
SatI	GCNGC	7 cut(s)	202, 220, 233, 236, 266, 371, 586
Sau3AI	GATC	8 cut(s)	423, 446, 507, 599, 655, 730, 761, 934
SchI	GAGTC	1 cut(s)	1054
ScrFI	CCNGG	3 cut(s)	161, 747, 1175
SduI	GDGCHC	1 cut(s)	470
SfaNI	GCATC	3 cut(s)	562, 880, 991
SfcI	CTRYAG	1 cut(s)	838
SmiMI	CAYNNNNRTG	1 cut(s)	740
SmlI	CTYRAG	1 cut(s)	567
SmoI	CTYRAG	1 cut(s)	567
Sse9I	AATT	4 cut(s)	114, 719, 945, 1135
SspMI	CTAG	1 cut(s)	759
StyD4I	CCNGG	3 cut(s)	159, 745, 1173
TaaI	ACNGT	6 cut(s)	323, 633, 880, 910, 1001, 1157
TaiI	ACGT	4 cut(s)	18, 330, 595, 1072
TaqI	TCGA	5 cut(s)	315, 513, 888, 969, 1084
TaqII	GACCGA	1 cut(s)	372
TasI	AATT	4 cut(s)	114, 719, 945, 1135
TauI	GCSGC	6 cut(s)	204, 222, 235, 238, 268, 588
TfiI	GAWTC	4 cut(s)	312, 526, 802, 1098
Tru1I	TTAA	4 cut(s)	701, 930, 944, 978
Tru9I	TTAA	4 cut(s)	701, 930, 944, 978
TscAI	CASTG	3 cut(s)	328, 730, 1162
TseFI	GTSAC	3 cut(s)	16, 323, 1001
TseI	GCWGC	1 cut(s)	370
Tsp45I	GTSAC	3 cut(s)	16, 323, 1001
TspDTI	ATGAA	3 cut(s)	422, 1182, 1263
TspGWI	ACGGA	1 cut(s)	836
TspRI	CASTG	3 cut(s)	328, 730, 1162
Van91I	CCANNNNNTGG	1 cut(s)	1114
XapI	RAATTY	1 cut(s)	719
XceI	RCATGY	1 cut(s)	745
XmnI	GAANNNNTTC	1 cut(s)	257
XspI	CTAG	1 cut(s)	759
ZraI	GACGTC	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.