Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007691

Physical Location & Seq

Genomic Coordinates Forward (+)

31483835 .. 31484467

Gene Structure 633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018538

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGGTTCCCTTGCTTCTGCGTTAACAGCATTGCACATGGAATTCAGTGATGATCTCACTTACATGCCTGGCATGGCTCCTAGATCTGCGAATCAGTCCAAGTTTGAAGATGGTGGAATGCAGGTTTTGAACCACTCTCAATCTATTCTCTCTTTGGTTGGCATTATGGCCAACTGTTTTACAGTAGAGGCTGATGAGCAGATTAAGGATCTCACTTTTATTGCTGAGGATACGGGTGATGTCGATTACATTAAGCATCGGGAGGATGACGACTGTGACAGCATGATGACGCTTCTCTTAGCACTCAATCCATCTAACAGTCTTGTCATCTGTCCTGATAAACGTGGAAACATTGCTCGATTTATCAATGGAATCAACAACCATTCTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009292 GO:0009294 GO:0009507 GO:0009536 GO:0009555 GO:0009889 GO:0009987 GO:0010556 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0046976 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051276 GO:0051704 GO:0051726 GO:0060255 GO:0065007 GO:0070734 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD SET

Protein Analysis

131

Amino Acids

14.24

Weight (kDa)

4.42

Isoelectric Point (pI)

39.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007691)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09790 AT5G09790
fragaria_vesca	FvH4_1g24041 FvH4_1g24041 FvH4_1g24041 FvH4_1g24041
malus_domestica	MD01G1012000.v1.1 MD15G1338000.v1.1
pyrus_communis	pycom01g04290 pycom15g28850
rosa_chinensis	RchiOBHm_Chr2g0120191
rosa_laevigata	RLG00000018530 RLG00000018538
rosa_multiflora	Rmu_sc0000394.1_g000029 Rmu_sc0004700.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123630
rosa_rugosa	Rorug02G0227600
rosa_samantha	Rh2AG284200 Rh2AG284300 Rh2BG295400 Rh2CG272800 Rh2DG309200 Rh2DG309300
rosa_wichuraiana	Rw2G022770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	112
AclWI	GGATC	1 cut(s)	216
AcoI	YGGCCR	1 cut(s)	168
AcsI	RAATTY	1 cut(s)	41
AgsI	TTSAA	2 cut(s)	107, 130
AjnI	CCWGG	1 cut(s)	67
AlwI	GGATC	1 cut(s)	216
AoxI	GGCC	1 cut(s)	168
ApoI	RAATTY	1 cut(s)	41
AsuHPI	GGTGA	1 cut(s)	248
BalI	TGGCCA	1 cut(s)	170
BbvCI	CCTCAGC	1 cut(s)	225
BccI	CCATC	2 cut(s)	104, 319
BciT130I	CCWGG	1 cut(s)	69
BciVI	GTATCC	1 cut(s)	223
BfaI	CTAG	1 cut(s)	81
BfuAI	ACCTGC	1 cut(s)	112
BfuI	GTATCC	1 cut(s)	223
BglII	AGATCT	1 cut(s)	83
Bme1390I	CCNGG	1 cut(s)	69
BmiI	GGNNCC	2 cut(s)	7, 78
BmrFI	CCNGG	1 cut(s)	69
BmsI	GCATC	1 cut(s)	265
Bpu10I	CCTNAGC	1 cut(s)	225
Bse3DI	GCAATG	2 cut(s)	29, 351
BseBI	CCWGG	1 cut(s)	69
BseGI	GGATG	1 cut(s)	271
BseMI	GCAATG	2 cut(s)	29, 351
BseMII	CTCAG	1 cut(s)	216
BshFI	GGCC	1 cut(s)	170
BsmI	GAATGC	1 cut(s)	123
BsnI	GGCC	1 cut(s)	170
Bsp143I	GATC	3 cut(s)	52, 83, 208
BspANI	GGCC	1 cut(s)	170
BspCNI	CTCAG	1 cut(s)	217
BspLI	GGNNCC	2 cut(s)	7, 78
BspMI	ACCTGC	1 cut(s)	112
BspPI	GGATC	1 cut(s)	216
BsrDI	GCAATG	2 cut(s)	29, 351
BssMI	GATC	3 cut(s)	52, 83, 208
Bst2UI	CCWGG	1 cut(s)	69
Bst4CI	ACNGT	4 cut(s)	176, 184, 275, 320
BstDEI	CTNAG	2 cut(s)	225, 298
BstF5I	GGATG	1 cut(s)	271
BstKTI	GATC	3 cut(s)	55, 86, 211
BstMBI	GATC	3 cut(s)	52, 83, 208
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNI	CCWGG	1 cut(s)	69
BstNSI	RCATGY	1 cut(s)	67
BstSCI	CCNGG	1 cut(s)	67
BstX2I	RGATCY	2 cut(s)	83, 208
BstYI	RGATCY	2 cut(s)	83, 208
BsuI	GTATCC	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	170
BtsCI	GGATG	1 cut(s)	271
BtsIMutI	CAGTG	1 cut(s)	52
BveI	ACCTGC	1 cut(s)	112
CseI	GACGC	1 cut(s)	298
CviAII	CATG	4 cut(s)	37, 64, 73, 283
CviJI	RGCY	3 cut(s)	77, 170, 191
CviKI_1	RGCY	3 cut(s)	77, 170, 191
DdeI	CTNAG	2 cut(s)	225, 298
DpnI	GATC	3 cut(s)	54, 85, 210
DpnII	GATC	3 cut(s)	52, 83, 208
EaeI	YGGCCR	1 cut(s)	168
EcoRI	GAATTC	1 cut(s)	41
EcoRII	CCWGG	1 cut(s)	67
FaeI	CATG	4 cut(s)	40, 67, 76, 286
FaiI	YATR	5 cut(s)	38, 65, 74, 167, 284
FatI	CATG	4 cut(s)	36, 63, 72, 282
FokI	GGATG	1 cut(s)	278
FspBI	CTAG	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	170
HgaI	GACGC	1 cut(s)	298
Hin1II	CATG	4 cut(s)	40, 67, 76, 286
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HinfI	GANTC	2 cut(s)	91, 372
HpaI	GTTAAC	1 cut(s)	24
HphI	GGTGA	1 cut(s)	248
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188III	TCNNGA	2 cut(s)	260, 335
Hpy8I	GTNNAC	1 cut(s)	24
HpyCH4III	ACNGT	4 cut(s)	176, 184, 275, 320
HpyCH4IV	ACGT	1 cut(s)	343
HpyCH4V	TGCA	2 cut(s)	34, 121
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	2 cut(s)	225, 298
HpySE526I	ACGT	1 cut(s)	343
Hsp92II	CATG	4 cut(s)	40, 67, 76, 286
KspAI	GTTAAC	1 cut(s)	24
Kzo9I	GATC	3 cut(s)	52, 83, 208
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	4 cut(s)	54, 81, 107, 348
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	1 cut(s)	81
MaeII	ACGT	1 cut(s)	343
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	3 cut(s)	54, 85, 210
MboI	GATC	3 cut(s)	52, 83, 208
MboII	GAAGA	1 cut(s)	119
MflI	RGATCY	2 cut(s)	83, 208
MlsI	TGGCCA	1 cut(s)	170
MluCI	AATT	1 cut(s)	41
MluNI	TGGCCA	1 cut(s)	170
MnlI	CCTC	3 cut(s)	181, 220, 256
Mox20I	TGGCCA	1 cut(s)	170
MscI	TGGCCA	1 cut(s)	170
MseI	TTAA	3 cut(s)	23, 204, 252
MslI	CAYNNNNRTG	1 cut(s)	62
Msp20I	TGGCCA	1 cut(s)	170
MspR9I	CCNGG	1 cut(s)	69
Mva1269I	GAATGC	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	69
MwoI	GCNNNNNNNGC	1 cut(s)	26
NdeII	GATC	3 cut(s)	52, 83, 208
NlaIII	CATG	4 cut(s)	40, 67, 76, 286
NlaIV	GGNNCC	2 cut(s)	7, 78
NmuCI	GTSAC	1 cut(s)	275
NspI	RCATGY	1 cut(s)	67
PctI	GAATGC	1 cut(s)	123
PfeI	GAWTC	2 cut(s)	91, 372
Psp6I	CCWGG	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	67
PspN4I	GGNNCC	2 cut(s)	7, 78
PsuI	RGATCY	2 cut(s)	83, 208
RseI	CAYNNNNRTG	1 cut(s)	62
SaqAI	TTAA	3 cut(s)	23, 204, 252
Sau3AI	GATC	3 cut(s)	52, 83, 208
ScrFI	CCNGG	1 cut(s)	69
SetI	ASST	2 cut(s)	126, 346
SfaNI	GCATC	1 cut(s)	265
SmiMI	CAYNNNNRTG	1 cut(s)	62
Sse9I	AATT	1 cut(s)	41
SspMI	CTAG	1 cut(s)	81
StyD4I	CCNGG	1 cut(s)	67
TaaI	ACNGT	4 cut(s)	176, 184, 275, 320
TaiI	ACGT	1 cut(s)	346
TaqI	TCGA	2 cut(s)	243, 358
TasI	AATT	1 cut(s)	41
TfiI	GAWTC	2 cut(s)	91, 372
Tru1I	TTAA	3 cut(s)	23, 204, 252
Tru9I	TTAA	3 cut(s)	23, 204, 252
TscAI	CASTG	1 cut(s)	52
TseFI	GTSAC	1 cut(s)	275
Tsp45I	GTSAC	1 cut(s)	275
TspRI	CASTG	1 cut(s)	52
XapI	RAATTY	1 cut(s)	41
XceI	RCATGY	1 cut(s)	67
XspI	CTAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.