Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0007691

Physical Location & Seq

Genomic Coordinates Forward (+)

34616651 .. 34617655

Gene Structure 1005 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG284300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGTTGCAGAAGAGAAGAAGAAGACTATTGCCATTTATTCCATCAGAGGATCCTGCTCAAAGGCTGAAACAAATGGGTTCCCTTGCTTCTGCATTAACAGCATTGCACATGGAATTCAGTGATGATCTCACTTACATGCCTGGCATGGCTCCTAGATCTGCAAATCATTCCAAGTTTGAAGATGGTGGAATGCAGGTTTTGAACCACTCTCAATCTATTCTCGCTTTGGTTGGCATTATGGCCAACTGTTTTACAGTAGAGGCTGATGAGCAGATTAAGGATCTCACATTTATTGCTGAGTATACGGGTGATGTCGATTACATTAAGCATCGGGAGAGTGACGACTGTGACAGCATGATGACCCTTCTCTTAGCACTCAATCCATCTAAGAGTCTTATCATCTGTCCTGATAAACGTGGAAACATTGCTCGATTTATCAATGGAATCAACAACCATTCTCTGGAGGGTAAGAAGAAGCAGAATTGTAAATGTGTGAGATACAGTGTCAACGATGAATGCCGGGTCTTATTGGTTGCTACTCGTGATATTGCTAAAGGAGAGAGGTTATATTATGATTATAATGGACATGAGCATGAATACCCTACTGAACATTTTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009292 GO:0009294 GO:0009507 GO:0009536 GO:0009555 GO:0009889 GO:0009987 GO:0010556 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0046976 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051276 GO:0051704 GO:0051726 GO:0060255 GO:0065007 GO:0070734 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD SET

Protein Analysis

206

Amino Acids

23.43

Weight (kDa)

6.24

Isoelectric Point (pI)

46.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SET	PF00856	86 - 194	6.3e-12	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007691)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09790 AT5G09790
fragaria_vesca	FvH4_1g24041 FvH4_1g24041 FvH4_1g24041 FvH4_1g24041
malus_domestica	MD01G1012000.v1.1 MD15G1338000.v1.1
pyrus_communis	pycom01g04290 pycom15g28850
rosa_chinensis	RchiOBHm_Chr2g0120191
rosa_laevigata	RLG00000018530 RLG00000018538
rosa_multiflora	Rmu_sc0000394.1_g000029 Rmu_sc0004700.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123630
rosa_rugosa	Rorug02G0227600
rosa_samantha	Rh2AG284200 Rh2AG284300 Rh2BG295400 Rh2CG272800 Rh2DG309200 Rh2DG309300
rosa_wichuraiana	Rw2G022770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	579
Acc36I	ACCTGC	1 cut(s)	184
AccB7I	CCANNNNNTGG	1 cut(s)	460
AccI	GTMKAC	1 cut(s)	302
AclWI	GGATC	3 cut(s)	44, 57, 288
AcoI	YGGCCR	1 cut(s)	240
AcsI	RAATTY	1 cut(s)	113
AfiI	CCNNNNNNNGG	1 cut(s)	460
AgsI	TTSAA	2 cut(s)	179, 202
AjnI	CCWGG	1 cut(s)	139
AlwI	GGATC	3 cut(s)	44, 57, 288
AoxI	GGCC	1 cut(s)	240
ApoI	RAATTY	1 cut(s)	113
AsuC2I	CCSGG	1 cut(s)	521
AsuHPI	GGTGA	1 cut(s)	320
BalI	TGGCCA	1 cut(s)	242
BamHI	GGATCC	1 cut(s)	49
BauI	CACGAG	1 cut(s)	540
BbsI	GAAGAC	1 cut(s)	28
BccI	CCATC	3 cut(s)	49, 176, 391
BciT130I	CCWGG	1 cut(s)	141
BcnI	CCSGG	1 cut(s)	521
BfaI	CTAG	1 cut(s)	153
BfuAI	ACCTGC	1 cut(s)	184
BglII	AGATCT	1 cut(s)	155
Bme1390I	CCNGG	2 cut(s)	141, 521
BmiI	GGNNCC	3 cut(s)	51, 79, 150
BmrFI	CCNGG	2 cut(s)	141, 521
BmsI	GCATC	1 cut(s)	337
BpiI	GAAGAC	1 cut(s)	28
BpmI	CTGGAG	1 cut(s)	482
BpuMI	CCSGG	1 cut(s)	521
Bsc4I	CCNNNNNNNGG	1 cut(s)	460
Bse3DI	GCAATG	2 cut(s)	101, 423
BseBI	CCWGG	1 cut(s)	141
BseLI	CCNNNNNNNGG	1 cut(s)	460
BseMI	GCAATG	2 cut(s)	101, 423
BseMII	CTCAG	1 cut(s)	288
BshFI	GGCC	1 cut(s)	242
BsiSI	CCGG	1 cut(s)	520
BslI	CCNNNNNNNGG	1 cut(s)	460
BsmI	GAATGC	2 cut(s)	195, 521
BsnI	GGCC	1 cut(s)	242
Bsp143I	GATC	4 cut(s)	49, 124, 155, 280
BspANI	GGCC	1 cut(s)	242
BspCNI	CTCAG	1 cut(s)	289
BspLI	GGNNCC	3 cut(s)	51, 79, 150
BspMI	ACCTGC	1 cut(s)	184
BspPI	GGATC	3 cut(s)	44, 57, 288
BsrDI	GCAATG	2 cut(s)	101, 423
BssMI	GATC	4 cut(s)	49, 124, 155, 280
BssNAI	GTATAC	1 cut(s)	303
BssSI	CACGAG	1 cut(s)	540
Bst1107I	GTATAC	1 cut(s)	303
Bst2BI	CACGAG	1 cut(s)	540
Bst2UI	CCWGG	1 cut(s)	141
Bst4CI	ACNGT	4 cut(s)	248, 256, 347, 503
Bst6I	CTCTTC	1 cut(s)	5
BstDEI	CTNAG	3 cut(s)	297, 370, 387
BstKTI	GATC	4 cut(s)	52, 127, 158, 283
BstMBI	GATC	4 cut(s)	49, 124, 155, 280
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNI	CCWGG	1 cut(s)	141
BstNSI	RCATGY	1 cut(s)	139
BstSCI	CCNGG	2 cut(s)	139, 519
BstV2I	GAAGAC	1 cut(s)	28
BstX2I	RGATCY	3 cut(s)	49, 155, 280
BstYI	RGATCY	3 cut(s)	49, 155, 280
BstZ17I	GTATAC	1 cut(s)	303
BsuRI	GGCC	1 cut(s)	242
BtsIMutI	CAGTG	2 cut(s)	124, 508
BveI	ACCTGC	1 cut(s)	184
CviAII	CATG	6 cut(s)	109, 136, 145, 355, 587, 593
CviJI	RGCY	4 cut(s)	64, 149, 242, 263
CviKI_1	RGCY	4 cut(s)	64, 149, 242, 263
DdeI	CTNAG	3 cut(s)	297, 370, 387
DpnI	GATC	4 cut(s)	51, 126, 157, 282
DpnII	GATC	4 cut(s)	49, 124, 155, 280
EaeI	YGGCCR	1 cut(s)	240
Eam1104I	CTCTTC	1 cut(s)	5
EarI	CTCTTC	1 cut(s)	5
EcoRI	GAATTC	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	139
FaeI	CATG	6 cut(s)	112, 139, 148, 358, 590, 596
FatI	CATG	6 cut(s)	108, 135, 144, 354, 586, 592
FblI	GTMKAC	1 cut(s)	302
FspBI	CTAG	1 cut(s)	153
GsuI	CTGGAG	1 cut(s)	482
HaeIII	GGCC	1 cut(s)	242
HapII	CCGG	1 cut(s)	520
Hin1II	CATG	6 cut(s)	112, 139, 148, 358, 590, 596
HincII	GTYRAC	1 cut(s)	508
HindII	GTYRAC	1 cut(s)	508
HinfI	GANTC	2 cut(s)	391, 444
HpaII	CCGG	1 cut(s)	520
HphI	GGTGA	1 cut(s)	320
Hpy166II	GTNNAC	2 cut(s)	303, 508
Hpy188I	TCNGA	1 cut(s)	46
Hpy188III	TCNNGA	4 cut(s)	332, 407, 461, 542
Hpy8I	GTNNAC	2 cut(s)	303, 508
HpyAV	CCTTC	1 cut(s)	374
HpyCH4III	ACNGT	4 cut(s)	248, 256, 347, 503
HpyCH4IV	ACGT	1 cut(s)	415
HpyCH4V	TGCA	5 cut(s)	7, 92, 106, 161, 193
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	3 cut(s)	297, 370, 387
HpySE526I	ACGT	1 cut(s)	415
Hsp92II	CATG	6 cut(s)	112, 139, 148, 358, 590, 596
Kzo9I	GATC	4 cut(s)	49, 124, 155, 280
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	7 cut(s)	66, 126, 153, 179, 420, 446, 533
LweI	GCATC	1 cut(s)	337
MaeI	CTAG	1 cut(s)	153
MaeII	ACGT	1 cut(s)	415
MaeIII	GTNAC	2 cut(s)	338, 347
MalI	GATC	4 cut(s)	51, 126, 157, 282
MboI	GATC	4 cut(s)	49, 124, 155, 280
MboII	GAAGA	6 cut(s)	22, 27, 30, 33, 191, 484
MflI	RGATCY	3 cut(s)	49, 155, 280
MlsI	TGGCCA	1 cut(s)	242
MluCI	AATT	2 cut(s)	113, 481
MluNI	TGGCCA	1 cut(s)	242
MlyI	GAGTC	1 cut(s)	400
MnlI	CCTC	4 cut(s)	40, 253, 457, 555
Mox20I	TGGCCA	1 cut(s)	242
MscI	TGGCCA	1 cut(s)	242
MseI	TTAA	3 cut(s)	95, 276, 324
MslI	CAYNNNNRTG	2 cut(s)	134, 591
Msp20I	TGGCCA	1 cut(s)	242
MspI	CCGG	1 cut(s)	520
MspR9I	CCNGG	2 cut(s)	141, 521
Mva1269I	GAATGC	2 cut(s)	195, 521
MvaI	CCWGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	1 cut(s)	98
NciI	CCSGG	1 cut(s)	521
NdeII	GATC	4 cut(s)	49, 124, 155, 280
NlaIII	CATG	6 cut(s)	112, 139, 148, 358, 590, 596
NlaIV	GGNNCC	3 cut(s)	51, 79, 150
NmuCI	GTSAC	2 cut(s)	338, 347
NspI	RCATGY	1 cut(s)	139
PctI	GAATGC	2 cut(s)	195, 521
PfeI	GAWTC	1 cut(s)	444
PflMI	CCANNNNNTGG	1 cut(s)	460
PleI	GAGTC	1 cut(s)	399
PpsI	GAGTC	1 cut(s)	399
PsiI	TTATAA	1 cut(s)	579
Psp6I	CCWGG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	139
PspN4I	GGNNCC	3 cut(s)	51, 79, 150
PsuI	RGATCY	3 cut(s)	49, 155, 280
RseI	CAYNNNNRTG	2 cut(s)	134, 591
SaqAI	TTAA	3 cut(s)	95, 276, 324
Sau3AI	GATC	4 cut(s)	49, 124, 155, 280
SchI	GAGTC	1 cut(s)	400
ScrFI	CCNGG	2 cut(s)	141, 521
SetI	ASST	3 cut(s)	198, 418, 566
SfaNI	GCATC	1 cut(s)	337
SmiMI	CAYNNNNRTG	2 cut(s)	134, 591
Sse9I	AATT	2 cut(s)	113, 481
SspMI	CTAG	1 cut(s)	153
StyD4I	CCNGG	2 cut(s)	139, 519
TaaI	ACNGT	4 cut(s)	248, 256, 347, 503
TaiI	ACGT	1 cut(s)	418
TaqI	TCGA	2 cut(s)	315, 430
TasI	AATT	2 cut(s)	113, 481
TfiI	GAWTC	1 cut(s)	444
Tru1I	TTAA	3 cut(s)	95, 276, 324
Tru9I	TTAA	3 cut(s)	95, 276, 324
TscAI	CASTG	2 cut(s)	124, 508
TseFI	GTSAC	2 cut(s)	338, 347
Tsp45I	GTSAC	2 cut(s)	338, 347
TspDTI	ATGAA	2 cut(s)	528, 609
TspRI	CASTG	2 cut(s)	124, 508
Van91I	CCANNNNNTGG	1 cut(s)	460
XapI	RAATTY	1 cut(s)	113
XceI	RCATGY	1 cut(s)	139
XmiI	GTMKAC	1 cut(s)	302
XspI	CTAG	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.