Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007691

Physical Location & Seq

Genomic Coordinates Reverse (-)

38110853 .. 38121027

Gene Structure 10175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1338000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGCTCCGGCCACCTCCTCCTCGCCTGCGGCTGCGGCTCCAGCTCAGCGGCTTATCCGCTTCAACCGGAGGACATCGGCTCCTCGCCAGCCTTCGCCGCCCGGGTCGCCGCCGCCGCAGAAGATGAAGCCTATGGCGGAGATAATGGCGAAGGCTAAATTCACGGTGGTGGAGAGAGGCGATTACAGCGACGTTACCTGCGAGCATTGTAGGTCGGGTGACCGATCCGACGAGCTGCTTCTCTGCGACAAATGCGATAGAGGCTTCCACATGAAATGCCTCCGGCCTATCGTCGCCATTGTCCCCATTGGATCATGGCTCTGCCCTTCCTGCTCCGGACACAGACGAGTAAGAAGTTTCTCGCAGAAAAAAATTATTGATTTTTTCCGGATTCAGAAACCTAGTGATCATGATCCCAAAGACAAATGTGCGTCTCCTCAAGATACCAGAAAACGCCGGAGGCGTTCAGGATCATTGGTGTTGCAAAAGAGAAGAAGAAGAATACTTCCATTTGTTTCATCAGAAGATCCTGCTCAAAGGCTGAAACAAATGGGTTCCCTGGCTTCTGCTTTAACAGCATTGCACATGGAATTCAGTGACAATCTCACTTACATGCCCAGAATGGCTCATAGATCTGCAAATCAGTCCAAGTTTGAGGACGGTGGCATGCAGATTCTTTCCAAGGAAGATACCGAGACATTGGAGCTTTGCAGAGCCATGTGTAAAAGAGGCGAATGCCCTCCTCTTACAGTAGCTTTTGATTCACGTGAAGGTTTTACGGTAGAGGCTGATGAGCAGATCAAGGATATGACTTTTATTGCTGAATACACGGGTGATGTTGATTACATAAAGCATCGGGAAAATGACGATTGTGACAGTATGATGACCCTTCTGTTAGCAACTGAACCATCTAAAAGTCTAGTCATCTGCCCTGATAAACGTGGAAACATCGCTCGATTTATCAACGGCATCAACAATCATACCCTGGAAGGTAAAAAGAAGCAGAATTGTAAATGTGTAAGATACAGTGTTAACGGTGAATGTCGGGTCTTTTTGGTTGCTACTCGTGATATTGCTAAAGGCGAGAGGCTATATTATGACTATAACGGATACGAGCAAGAATACCCTACTCAACATTTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009292 GO:0009294 GO:0009507 GO:0009536 GO:0009555 GO:0009889 GO:0009987 GO:0010556 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0046976 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051276 GO:0051704 GO:0051726 GO:0060255 GO:0065007 GO:0070734 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD SET

Protein Analysis

382

Amino Acids

43.25

Weight (kDa)

9.1

Isoelectric Point (pI)

64.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	67 - 111	1.4e-10	PHD-finger
SET	PF00856	258 - 369	8.5e-12	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007691)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09790 AT5G09790
fragaria_vesca	FvH4_1g24041 FvH4_1g24041 FvH4_1g24041 FvH4_1g24041
malus_domestica	MD01G1012000.v1.1 MD15G1338000.v1.1
pyrus_communis	pycom01g04290 pycom15g28850
rosa_chinensis	RchiOBHm_Chr2g0120191
rosa_laevigata	RLG00000018530 RLG00000018538
rosa_multiflora	Rmu_sc0000394.1_g000029 Rmu_sc0004700.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123630
rosa_rugosa	Rorug02G0227600
rosa_samantha	Rh2AG284200 Rh2AG284300 Rh2BG295400 Rh2CG272800 Rh2DG309200 Rh2DG309300
rosa_wichuraiana	Rw2G022770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	206
AccIII	TCCGGA	2 cut(s)	335, 387
AciI	CCGC	9 cut(s)	29, 35, 49, 58, 98, 110, 113, 116, 137
AclWI	GGATC	5 cut(s)	219, 319, 407, 478, 521
AcoI	YGGCCR	1 cut(s)	9
AcsI	RAATTY	2 cut(s)	158, 590
AcvI	CACGTG	1 cut(s)	767
AgsI	TTSAA	1 cut(s)	64
AjnI	CCWGG	2 cut(s)	558, 984
AleI	CACNNNNGTG	1 cut(s)	167
AluBI	AGCT	4 cut(s)	44, 235, 706, 755
AluI	AGCT	4 cut(s)	44, 235, 706, 755
Alw26I	GTCTC	2 cut(s)	438, 689
AlwI	GGATC	5 cut(s)	219, 319, 407, 478, 521
Ama87I	CYCGRG	1 cut(s)	101
Aor13HI	TCCGGA	2 cut(s)	335, 387
AoxI	GGCC	2 cut(s)	9, 284
ApeKI	GCWGC	2 cut(s)	32, 235
ApoI	RAATTY	2 cut(s)	158, 590
AsuC2I	CCSGG	2 cut(s)	102, 103
AsuHPI	GGTGA	3 cut(s)	230, 845, 1049
AvaI	CYCGRG	1 cut(s)	101
BauI	CACGAG	1 cut(s)	1065
BbrPI	CACGTG	1 cut(s)	767
BbvI	GCAGC	2 cut(s)	19, 222
BccI	CCATC	1 cut(s)	916
BceAI	ACGGC	1 cut(s)	982
BciT130I	CCWGG	2 cut(s)	560, 986
BciVI	GTATCC	1 cut(s)	1103
BclI	TGATCA	1 cut(s)	406
BcnI	CCSGG	2 cut(s)	102, 103
BcoDI	GTCTC	2 cut(s)	438, 689
BfaI	CTAG	2 cut(s)	402, 920
BfuAI	ACCTGC	1 cut(s)	206
BfuI	GTATCC	1 cut(s)	1103
BglII	AGATCT	1 cut(s)	632
BisI	GCNGC	9 cut(s)	30, 33, 36, 50, 98, 110, 113, 116, 236
BlpI	GCTNAGC	1 cut(s)	45
BlsI	GCNGC	9 cut(s)	31, 34, 37, 51, 99, 111, 114, 117, 237
Bme1390I	CCNGG	4 cut(s)	102, 103, 560, 986
BmeT110I	CYCGRG	1 cut(s)	101
BmiI	GGNNCC	4 cut(s)	6, 39, 81, 556
BmrFI	CCNGG	4 cut(s)	102, 103, 560, 986
BmsI	GCATC	2 cut(s)	862, 978
BpmI	CTGGAG	1 cut(s)	24
Bpu1102I	GCTNAGC	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	423
BpuMI	CCSGG	2 cut(s)	102, 103
BsaAI	YACGTR	1 cut(s)	767
BsaBI	GATNNNNATC	1 cut(s)	411
BsaJI	CCNNGG	4 cut(s)	101, 558, 681, 984
BsaWI	WCCGGW	3 cut(s)	66, 335, 387
BsaXI	ACNNNNNCTCC	2 cut(s)	64, 94
Bse3DI	GCAATG	1 cut(s)	578
Bse8I	GATNNNNATC	1 cut(s)	411
BseAI	TCCGGA	2 cut(s)	335, 387
BseBI	CCWGG	2 cut(s)	560, 986
BseDI	CCNNGG	4 cut(s)	101, 558, 681, 984
BseJI	GATNNNNATC	1 cut(s)	411
BseMI	GCAATG	1 cut(s)	578
BseMII	CTCAG	1 cut(s)	59
BseRI	GAGGAG	5 cut(s)	7, 10, 72, 426, 732
BseXI	GCAGC	2 cut(s)	19, 222
BshFI	GGCC	2 cut(s)	11, 286
BsiHKCI	CYCGRG	1 cut(s)	101
BsiSI	CCGG	7 cut(s)	8, 67, 102, 283, 336, 388, 457
BslFI	GGGAC	1 cut(s)	287
BsmAI	GTCTC	2 cut(s)	438, 689
BsmBI	CGTCTC	1 cut(s)	438
BsmFI	GGGAC	1 cut(s)	287
BsmI	GAATGC	1 cut(s)	740
BsnI	GGCC	2 cut(s)	11, 286
BsoBI	CYCGRG	1 cut(s)	101
Bsp13I	TCCGGA	2 cut(s)	335, 387
Bsp143I	GATC	8 cut(s)	224, 311, 406, 412, 470, 526, 632, 798
Bsp1720I	GCTNAGC	1 cut(s)	45
BspACI	CCGC	9 cut(s)	29, 35, 49, 58, 98, 110, 113, 116, 137
BspANI	GGCC	2 cut(s)	11, 286
BspCNI	CTCAG	1 cut(s)	58
BspEI	TCCGGA	2 cut(s)	335, 387
BspHI	TCATGA	1 cut(s)	409
BspLI	GGNNCC	4 cut(s)	6, 39, 81, 556
BspMI	ACCTGC	1 cut(s)	206
BspPI	GGATC	5 cut(s)	219, 319, 407, 478, 521
BsrDI	GCAATG	1 cut(s)	578
BssECI	CCNNGG	4 cut(s)	101, 558, 681, 984
BssMI	GATC	8 cut(s)	224, 311, 406, 412, 470, 526, 632, 798
BssSI	CACGAG	1 cut(s)	1065
BssT1I	CCWWGG	1 cut(s)	681
Bst2BI	CACGAG	1 cut(s)	1065
Bst2UI	CCWGG	2 cut(s)	560, 986
Bst4CI	ACNGT	7 cut(s)	166, 662, 751, 781, 878, 1028, 1037
BstBAI	YACGTR	1 cut(s)	767
BstC8I	GCNNGC	4 cut(s)	27, 89, 203, 668
BstDEI	CTNAG	1 cut(s)	45
BstEII	GGTNACC	1 cut(s)	218
BstKTI	GATC	8 cut(s)	227, 314, 409, 415, 473, 529, 635, 801
BstMAI	GTCTC	2 cut(s)	438, 689
BstMBI	GATC	8 cut(s)	224, 311, 406, 412, 470, 526, 632, 798
BstNI	CCWGG	2 cut(s)	560, 986
BstNSI	RCATGY	2 cut(s)	616, 670
BstPI	GGTNACC	1 cut(s)	218
BstSCI	CCNGG	4 cut(s)	100, 101, 558, 984
BstV1I	GCAGC	2 cut(s)	19, 222
BstX2I	RGATCY	2 cut(s)	526, 632
BstYI	RGATCY	2 cut(s)	526, 632
BsuI	GTATCC	1 cut(s)	1103
BsuRI	GGCC	2 cut(s)	11, 286
BtgZI	GCGATG	1 cut(s)	934
BtsIMutI	CAGTG	2 cut(s)	601, 1033
BveI	ACCTGC	1 cut(s)	206
Cac8I	GCNNGC	4 cut(s)	27, 89, 203, 668
CciI	TCATGA	1 cut(s)	409
Cfr9I	CCCGGG	1 cut(s)	101
CseI	GACGC	1 cut(s)	420
CviAII	CATG	7 cut(s)	271, 315, 410, 586, 613, 667, 718
DdeI	CTNAG	1 cut(s)	45
DpnI	GATC	8 cut(s)	226, 313, 408, 414, 472, 528, 634, 800
DpnII	GATC	8 cut(s)	224, 311, 406, 412, 470, 526, 632, 798
EaeI	YGGCCR	1 cut(s)	9
EciI	GGCGGA	1 cut(s)	152
Eco130I	CCWWGG	1 cut(s)	681
Eco72I	CACGTG	1 cut(s)	767
Eco88I	CYCGRG	1 cut(s)	101
Eco91I	GGTNACC	1 cut(s)	218
EcoO65I	GGTNACC	1 cut(s)	218
EcoRI	GAATTC	1 cut(s)	590
EcoRII	CCWGG	2 cut(s)	558, 984
EcoT14I	CCWWGG	1 cut(s)	681
ErhI	CCWWGG	1 cut(s)	681
Esp3I	CGTCTC	1 cut(s)	438
FaeI	CATG	7 cut(s)	274, 318, 413, 589, 616, 670, 721
FaqI	GGGAC	1 cut(s)	287
FatI	CATG	7 cut(s)	270, 314, 409, 585, 612, 666, 717
FbaI	TGATCA	1 cut(s)	406
Fnu4HI	GCNGC	9 cut(s)	30, 33, 36, 50, 98, 110, 113, 116, 236
Fsp4HI	GCNGC	9 cut(s)	30, 33, 36, 50, 98, 110, 113, 116, 236
FspBI	CTAG	2 cut(s)	402, 920
GluI	GCNGC	9 cut(s)	30, 33, 36, 50, 98, 110, 113, 116, 236
GsuI	CTGGAG	1 cut(s)	24
HaeIII	GGCC	2 cut(s)	11, 286
HapII	CCGG	7 cut(s)	8, 67, 102, 283, 336, 388, 457
HgaI	GACGC	1 cut(s)	420
Hin1II	CATG	7 cut(s)	274, 318, 413, 589, 616, 670, 721
HincII	GTYRAC	1 cut(s)	1033
HindII	GTYRAC	1 cut(s)	1033
HinfI	GANTC	3 cut(s)	391, 673, 761
HpaI	GTTAAC	1 cut(s)	1033
HpaII	CCGG	7 cut(s)	8, 67, 102, 283, 336, 388, 457
HphI	GGTGA	3 cut(s)	230, 845, 1049
Hpy166II	GTNNAC	1 cut(s)	1033
Hpy188I	TCNGA	4 cut(s)	229, 396, 523, 1145
Hpy188III	TCNNGA	7 cut(s)	336, 388, 410, 440, 468, 857, 1067
Hpy8I	GTNNAC	1 cut(s)	1033
Hpy99I	CGWCG	3 cut(s)	194, 233, 296
HpyAV	CCTTC	6 cut(s)	102, 145, 336, 764, 899, 983
HpyCH4III	ACNGT	7 cut(s)	166, 662, 751, 781, 878, 1028, 1037
HpyCH4IV	ACGT	3 cut(s)	192, 766, 940
HpyCH4V	TGCA	5 cut(s)	484, 583, 638, 670, 711
HpyF3I	CTNAG	1 cut(s)	45
HpySE526I	ACGT	3 cut(s)	192, 766, 940
Hsp92II	CATG	7 cut(s)	274, 318, 413, 589, 616, 670, 721
Kpn2I	TCCGGA	2 cut(s)	335, 387
Ksp22I	TGATCA	1 cut(s)	406
KspAI	GTTAAC	1 cut(s)	1033
Kzo9I	GATC	8 cut(s)	224, 311, 406, 412, 470, 526, 632, 798
LmnI	GCTCC	5 cut(s)	10, 43, 85, 338, 703
Lsp1109I	GCAGC	2 cut(s)	19, 222
LweI	GCATC	2 cut(s)	862, 978
MaeI	CTAG	2 cut(s)	402, 920
MaeII	ACGT	3 cut(s)	192, 766, 940
MaeIII	GTNAC	4 cut(s)	193, 218, 596, 872
MalI	GATC	8 cut(s)	226, 313, 408, 414, 472, 528, 634, 800
MboI	GATC	8 cut(s)	224, 311, 406, 412, 470, 526, 632, 798
MboII	GAAGA	6 cut(s)	133, 504, 507, 510, 536, 698
MflI	RGATCY	2 cut(s)	526, 632
MluCI	AATT	4 cut(s)	158, 372, 590, 1006
MmeI	TCCRAC	1 cut(s)	252
MroI	TCCGGA	2 cut(s)	335, 387
MseI	TTAA	2 cut(s)	572, 1032
MslI	CAYNNNNRTG	2 cut(s)	167, 611
MspA1I	CMGCKG	1 cut(s)	49
MspI	CCGG	7 cut(s)	8, 67, 102, 283, 336, 388, 457
MspR9I	CCNGG	4 cut(s)	102, 103, 560, 986
Mva1269I	GAATGC	1 cut(s)	740
MvaI	CCWGG	2 cut(s)	560, 986
NciI	CCSGG	2 cut(s)	102, 103
NdeII	GATC	8 cut(s)	224, 311, 406, 412, 470, 526, 632, 798
NlaIII	CATG	7 cut(s)	274, 318, 413, 589, 616, 670, 721
NlaIV	GGNNCC	4 cut(s)	6, 39, 81, 556
NmuCI	GTSAC	3 cut(s)	218, 596, 872
NspI	RCATGY	2 cut(s)	616, 670
OliI	CACNNNNGTG	1 cut(s)	167
PaeI	GCATGC	1 cut(s)	670
PagI	TCATGA	1 cut(s)	409
PcsI	WCGNNNNNNNCGW	2 cut(s)	198, 460
PctI	GAATGC	1 cut(s)	740
PfeI	GAWTC	3 cut(s)	391, 673, 761
PkrI	GCNGC	9 cut(s)	31, 34, 37, 51, 99, 111, 114, 117, 237
PmaCI	CACGTG	1 cut(s)	767
PmlI	CACGTG	1 cut(s)	767
Ppu21I	YACGTR	1 cut(s)	767
Psp6I	CCWGG	2 cut(s)	558, 984
PspCI	CACGTG	1 cut(s)	767
PspEI	GGTNACC	1 cut(s)	218
PspGI	CCWGG	2 cut(s)	558, 984
PspN4I	GGNNCC	4 cut(s)	6, 39, 81, 556
PsuI	RGATCY	2 cut(s)	526, 632
RseI	CAYNNNNRTG	2 cut(s)	167, 611
SaqAI	TTAA	2 cut(s)	572, 1032
SatI	GCNGC	9 cut(s)	30, 33, 36, 50, 98, 110, 113, 116, 236
Sau3AI	GATC	8 cut(s)	224, 311, 406, 412, 470, 526, 632, 798
ScrFI	CCNGG	4 cut(s)	102, 103, 560, 986
SfaNI	GCATC	2 cut(s)	862, 978
SmaI	CCCGGG	1 cut(s)	103
SmiMI	CAYNNNNRTG	2 cut(s)	167, 611
SmlI	CTYRAG	1 cut(s)	438
SmoI	CTYRAG	1 cut(s)	438
SphI	GCATGC	1 cut(s)	670
Sse9I	AATT	4 cut(s)	158, 372, 590, 1006
SsiI	CCGC	9 cut(s)	29, 35, 49, 58, 98, 110, 113, 116, 137
SspMI	CTAG	2 cut(s)	402, 920
StyD4I	CCNGG	4 cut(s)	100, 101, 558, 984
StyI	CCWWGG	1 cut(s)	681
TaaI	ACNGT	7 cut(s)	166, 662, 751, 781, 878, 1028, 1037
TaiI	ACGT	3 cut(s)	195, 769, 943
TaqI	TCGA	1 cut(s)	955
TaqII	GACCGA	1 cut(s)	237
TasI	AATT	4 cut(s)	158, 372, 590, 1006
TauI	GCSGC	7 cut(s)	32, 38, 52, 100, 112, 115, 118
TfiI	GAWTC	3 cut(s)	391, 673, 761
Tru1I	TTAA	2 cut(s)	572, 1032
Tru9I	TTAA	2 cut(s)	572, 1032
TscAI	CASTG	2 cut(s)	601, 1033
TseFI	GTSAC	3 cut(s)	218, 596, 872
TseI	GCWGC	2 cut(s)	32, 235
Tsp45I	GTSAC	3 cut(s)	218, 596, 872
TspDTI	ATGAA	3 cut(s)	140, 287, 507
TspGWI	ACGGA	1 cut(s)	1122
TspMI	CCCGGG	1 cut(s)	101
TspRI	CASTG	2 cut(s)	601, 1033
XapI	RAATTY	2 cut(s)	158, 590
XceI	RCATGY	2 cut(s)	616, 670
XmaI	CCCGGG	1 cut(s)	101
XspI	CTAG	2 cut(s)	402, 920

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.