Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0007691

Physical Location & Seq

Genomic Coordinates Forward (+)

3202539 .. 3212064

Gene Structure 9526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g04290.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGCTCCGGCTACCACCTCCTCGGCGGCTGCGGCAGCTGCTCCAGCTCACCGTTTTATTCGCTTCAACCGGAGGACATCGGCGCCGCGCCAGCCTTCGCCGCCTGGGTCGCCGCCGAAGAAGAAGATGAAGTCAATGGCGGAGATAATGGCGAAGGCTAAATTCACGGTGGTAGAGAGAGGCGATTATGGCGACGTTACCTGCGAGCATTGTAGGTCGGGTGACCGATCCGACGAGCTGCTTCTTTGCGATAAATGCGATAGAGGCTTCCACATGAAATGCCTCAGGCCTATCGTCGCCATTGTCCCTATTGGATCATGGCTCTGCCCTGCCTGCTCCGGACACAGACGAGTAAGAAGTTTCTCGCAGAAAAAAATTATTGATTTTTTCCGGATTCAGAAATGTAGTGATCGTGACCCCAAAGACGAATGTGCTCCTCCTCAAGATGCCAGAAAACGCCGGAGGCGTTCAGGATCATTAGTGTTGCAGAAGAGAAGAAGAAGAATACTTCCATTTGTTTCATCAGAAGATCCTGCTCAAAGGCTGAAACAAATGGGTTCCCTGGCTTCTGCTTTAACAGCATTGCACATGGAATTCAGTGACGATCTCGCTTACATGCCCGGAATGGCTCCAAGATCCGCTAATCAGTCCAAGTTTGAAGACGGTGGCATGCAGATTCTTTCCAAGGAAGATACCGAGACATTGGAGCTTTGCAGAGCCATGTGCAAAAGAGGCGAATGCCCTCCTCTTAAAGTAGCTTTTGATTCACGCGAAGGTTTTACAGTAGAGGCTGATGAGCAGATGAAGGATATGACTTTTATTGCTGAATACACGGGTGATGTTGATTACATTAAGCATCGGGAAAATGACGATTGTGACAGTATGATGACCCTTCTGTTAGCAACTGAACCATCTAAAAGTCTTGTCATCTGCCCTGATAAACGCGGAAACATAGCTCGATTTATCAACGGCATCAACAATCATACCTTGGAAGGAAAAAAGAAGCAGAATTGTAGATGTGTGAGATACAGTGTTAACGGTGAATGTCGGGTCTTTTTGGTTGCTACTCGTGATATTGCTAAAGGGGAGAGATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009292 GO:0009294 GO:0009507 GO:0009536 GO:0009555 GO:0009889 GO:0009987 GO:0010556 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0046976 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051276 GO:0051704 GO:0051726 GO:0060255 GO:0065007 GO:0070734 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD SET

Protein Analysis

366

Amino Acids

41.02

Weight (kDa)

9.26

Isoelectric Point (pI)

64.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007691)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09790 AT5G09790
fragaria_vesca	FvH4_1g24041 FvH4_1g24041 FvH4_1g24041 FvH4_1g24041
malus_domestica	MD01G1012000.v1.1 MD15G1338000.v1.1
pyrus_communis	pycom01g04290 pycom15g28850
rosa_chinensis	RchiOBHm_Chr2g0120191
rosa_laevigata	RLG00000018530 RLG00000018538
rosa_multiflora	Rmu_sc0000394.1_g000029 Rmu_sc0004700.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123630
rosa_rugosa	Rorug02G0227600
rosa_samantha	Rh2AG284200 Rh2AG284300 Rh2BG295400 Rh2CG272800 Rh2DG309200 Rh2DG309300
rosa_wichuraiana	Rw2G022770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	209
AccB1I	GGYRCC	1 cut(s)	82
AccII	CGCG	3 cut(s)	88, 771, 945
AccIII	TCCGGA	2 cut(s)	338, 390
AciI	CCGC	8 cut(s)	26, 32, 86, 101, 113, 140, 639, 945
AclWI	GGATC	5 cut(s)	222, 322, 481, 524, 630
AcsI	RAATTY	2 cut(s)	161, 593
AcyI	GRCGYC	1 cut(s)	83
AgsI	TTSAA	2 cut(s)	67, 659
AjnI	CCWGG	2 cut(s)	103, 561
AluBI	AGCT	6 cut(s)	38, 47, 238, 709, 758, 956
AluI	AGCT	6 cut(s)	38, 47, 238, 709, 758, 956
Alw21I	GWGCWC	1 cut(s)	436
Alw26I	GTCTC	1 cut(s)	692
AlwI	GGATC	5 cut(s)	222, 322, 481, 524, 630
Aor13HI	TCCGGA	2 cut(s)	338, 390
AoxI	GGCC	1 cut(s)	287
ApeKI	GCWGC	4 cut(s)	29, 35, 38, 238
ApoI	RAATTY	2 cut(s)	161, 593
AspLEI	GCGC	2 cut(s)	85, 90
AsuC2I	CCSGG	1 cut(s)	621
AsuHPI	GGTGA	4 cut(s)	41, 233, 848, 1052
AxyI	CCTNAGG	1 cut(s)	284
BanI	GGYRCC	1 cut(s)	82
BauI	CACGAG	1 cut(s)	1068
BbsI	GAAGAC	1 cut(s)	666
Bbv12I	GWGCWC	1 cut(s)	436
BbvI	GCAGC	4 cut(s)	16, 25, 47, 225
BccI	CCATC	1 cut(s)	919
BceAI	ACGGC	1 cut(s)	985
BciT130I	CCWGG	2 cut(s)	105, 563
BcnI	CCSGG	1 cut(s)	621
BcoDI	GTCTC	1 cut(s)	692
BfoI	RGCGCY	1 cut(s)	86
BfuAI	ACCTGC	1 cut(s)	209
BisI	GCNGC	9 cut(s)	27, 30, 33, 36, 39, 86, 101, 113, 239
BlsI	GCNGC	9 cut(s)	28, 31, 34, 37, 40, 87, 102, 114, 240
Bme1390I	CCNGG	3 cut(s)	105, 563, 621
BmiI	GGNNCC	4 cut(s)	6, 84, 559, 630
BmrFI	CCNGG	3 cut(s)	105, 563, 621
BmsI	GCATC	3 cut(s)	436, 865, 981
BpiI	GAAGAC	1 cut(s)	666
BpmI	CTGGAG	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	426
BpuMI	CCSGG	1 cut(s)	621
BsaHI	GRCGYC	1 cut(s)	83
BsaJI	CCNNGG	5 cut(s)	21, 104, 561, 684, 987
BsaWI	WCCGGW	3 cut(s)	69, 338, 390
Bse21I	CCTNAGG	1 cut(s)	284
Bse3DI	GCAATG	1 cut(s)	581
BseAI	TCCGGA	2 cut(s)	338, 390
BseBI	CCWGG	2 cut(s)	105, 563
BseDI	CCNNGG	5 cut(s)	21, 104, 561, 684, 987
BseMI	GCAATG	1 cut(s)	581
BseMII	CTCAG	1 cut(s)	298
BseRI	GAGGAG	4 cut(s)	10, 426, 429, 735
BseXI	GCAGC	4 cut(s)	16, 25, 47, 225
Bsh1236I	CGCG	3 cut(s)	88, 771, 945
BshFI	GGCC	1 cut(s)	289
BshNI	GGYRCC	1 cut(s)	82
BsiHKAI	GWGCWC	1 cut(s)	436
BsiSI	CCGG	6 cut(s)	8, 70, 339, 391, 460, 621
BslFI	GGGAC	1 cut(s)	290
BsmAI	GTCTC	1 cut(s)	692
BsmFI	GGGAC	1 cut(s)	290
BsmI	GAATGC	1 cut(s)	743
BsnI	GGCC	1 cut(s)	289
Bsp1286I	GDGCHC	1 cut(s)	436
Bsp13I	TCCGGA	2 cut(s)	338, 390
Bsp143I	GATC	7 cut(s)	227, 314, 409, 473, 529, 604, 635
BspACI	CCGC	8 cut(s)	26, 32, 86, 101, 113, 140, 639, 945
BspANI	GGCC	1 cut(s)	289
BspCNI	CTCAG	1 cut(s)	297
BspEI	TCCGGA	2 cut(s)	338, 390
BspFNI	CGCG	3 cut(s)	88, 771, 945
BspLI	GGNNCC	4 cut(s)	6, 84, 559, 630
BspMI	ACCTGC	1 cut(s)	209
BspPI	GGATC	5 cut(s)	222, 322, 481, 524, 630
BspT107I	GGYRCC	1 cut(s)	82
BsrDI	GCAATG	1 cut(s)	581
BssECI	CCNNGG	5 cut(s)	21, 104, 561, 684, 987
BssMI	GATC	7 cut(s)	227, 314, 409, 473, 529, 604, 635
BssNI	GRCGYC	1 cut(s)	83
BssSI	CACGAG	1 cut(s)	1068
BssT1I	CCWWGG	2 cut(s)	684, 987
Bst2BI	CACGAG	1 cut(s)	1068
Bst2UI	CCWGG	2 cut(s)	105, 563
Bst4CI	ACNGT	7 cut(s)	53, 169, 665, 784, 881, 1031, 1040
Bst6I	CTCTTC	1 cut(s)	485
BstACI	GRCGYC	1 cut(s)	83
BstC8I	GCNNGC	4 cut(s)	92, 206, 334, 671
BstDEI	CTNAG	1 cut(s)	284
BstEII	GGTNACC	1 cut(s)	221
BstFNI	CGCG	3 cut(s)	88, 771, 945
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	2 cut(s)	85, 90
BstKTI	GATC	7 cut(s)	230, 317, 412, 476, 532, 607, 638
BstMAI	GTCTC	1 cut(s)	692
BstMBI	GATC	7 cut(s)	227, 314, 409, 473, 529, 604, 635
BstNI	CCWGG	2 cut(s)	105, 563
BstNSI	RCATGY	2 cut(s)	619, 673
BstPI	GGTNACC	1 cut(s)	221
BstSCI	CCNGG	3 cut(s)	103, 561, 619
BstUI	CGCG	3 cut(s)	88, 771, 945
BstV1I	GCAGC	4 cut(s)	16, 25, 47, 225
BstV2I	GAAGAC	1 cut(s)	666
BstX2I	RGATCY	2 cut(s)	529, 635
BstYI	RGATCY	2 cut(s)	529, 635
Bsu36I	CCTNAGG	1 cut(s)	284
BsuRI	GGCC	1 cut(s)	289
BtsIMutI	CAGTG	2 cut(s)	604, 1036
BveI	ACCTGC	1 cut(s)	209
Cac8I	GCNNGC	4 cut(s)	92, 206, 334, 671
CfoI	GCGC	2 cut(s)	85, 90
CviAII	CATG	6 cut(s)	274, 318, 589, 616, 670, 721
DdeI	CTNAG	1 cut(s)	284
DinI	GGCGCC	1 cut(s)	84
DpnI	GATC	7 cut(s)	229, 316, 411, 475, 531, 606, 637
DpnII	GATC	7 cut(s)	227, 314, 409, 473, 529, 604, 635
Eam1104I	CTCTTC	1 cut(s)	485
EarI	CTCTTC	1 cut(s)	485
EciI	GGCGGA	1 cut(s)	155
Eco130I	CCWWGG	2 cut(s)	684, 987
Eco147I	AGGCCT	1 cut(s)	289
Eco81I	CCTNAGG	1 cut(s)	284
Eco91I	GGTNACC	1 cut(s)	221
EcoO65I	GGTNACC	1 cut(s)	221
EcoRI	GAATTC	1 cut(s)	593
EcoRII	CCWGG	2 cut(s)	103, 561
EcoT14I	CCWWGG	2 cut(s)	684, 987
EgeI	GGCGCC	1 cut(s)	84
EheI	GGCGCC	1 cut(s)	84
ErhI	CCWWGG	2 cut(s)	684, 987
FaeI	CATG	6 cut(s)	277, 321, 592, 619, 673, 724
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	6 cut(s)	273, 317, 588, 615, 669, 720
Fnu4HI	GCNGC	9 cut(s)	27, 30, 33, 36, 39, 86, 101, 113, 239
Fsp4HI	GCNGC	9 cut(s)	27, 30, 33, 36, 39, 86, 101, 113, 239
GlaI	GCGC	2 cut(s)	84, 89
GluI	GCNGC	9 cut(s)	27, 30, 33, 36, 39, 86, 101, 113, 239
GsuI	CTGGAG	1 cut(s)	27
HaeII	RGCGCY	1 cut(s)	86
HaeIII	GGCC	1 cut(s)	289
HapII	CCGG	6 cut(s)	8, 70, 339, 391, 460, 621
HhaI	GCGC	2 cut(s)	85, 90
Hin1I	GRCGYC	1 cut(s)	83
Hin1II	CATG	6 cut(s)	277, 321, 592, 619, 673, 724
Hin6I	GCGC	2 cut(s)	83, 88
HinP1I	GCGC	2 cut(s)	83, 88
HincII	GTYRAC	1 cut(s)	1036
HindII	GTYRAC	1 cut(s)	1036
HinfI	GANTC	3 cut(s)	394, 676, 764
HpaI	GTTAAC	1 cut(s)	1036
HpaII	CCGG	6 cut(s)	8, 70, 339, 391, 460, 621
HphI	GGTGA	4 cut(s)	41, 233, 848, 1052
Hpy166II	GTNNAC	1 cut(s)	1036
Hpy188I	TCNGA	3 cut(s)	232, 399, 526
Hpy188III	TCNNGA	7 cut(s)	339, 391, 413, 443, 471, 860, 1070
Hpy8I	GTNNAC	1 cut(s)	1036
Hpy99I	CGWCG	3 cut(s)	197, 236, 299
HpyAV	CCTTC	6 cut(s)	105, 148, 767, 799, 902, 986
HpyCH4III	ACNGT	7 cut(s)	53, 169, 665, 784, 881, 1031, 1040
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	5 cut(s)	487, 586, 673, 714, 726
HpyF3I	CTNAG	1 cut(s)	284
HpySE526I	ACGT	1 cut(s)	195
Hsp92I	GRCGYC	1 cut(s)	83
Hsp92II	CATG	6 cut(s)	277, 321, 592, 619, 673, 724
HspAI	GCGC	2 cut(s)	83, 88
KasI	GGCGCC	1 cut(s)	82
Kpn2I	TCCGGA	2 cut(s)	338, 390
KspAI	GTTAAC	1 cut(s)	1036
Kzo9I	GATC	7 cut(s)	227, 314, 409, 473, 529, 604, 635
LmnI	GCTCC	6 cut(s)	10, 46, 341, 439, 634, 706
Lsp1109I	GCAGC	4 cut(s)	16, 25, 47, 225
LweI	GCATC	3 cut(s)	436, 865, 981
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	5 cut(s)	196, 221, 413, 599, 875
MalI	GATC	7 cut(s)	229, 316, 411, 475, 531, 606, 637
MboI	GATC	7 cut(s)	227, 314, 409, 473, 529, 604, 635
MflI	RGATCY	2 cut(s)	529, 635
MhlI	GDGCHC	1 cut(s)	436
MluCI	AATT	4 cut(s)	161, 375, 593, 1009
Mly113I	GGCGCC	1 cut(s)	83
MmeI	TCCRAC	1 cut(s)	255
MroI	TCCGGA	2 cut(s)	338, 390
MseI	TTAA	4 cut(s)	575, 750, 852, 1035
MspA1I	CMGCKG	1 cut(s)	38
MspI	CCGG	6 cut(s)	8, 70, 339, 391, 460, 621
MspR9I	CCNGG	3 cut(s)	105, 563, 621
MteI	GCGCNGCGC	1 cut(s)	86
Mva1269I	GAATGC	1 cut(s)	743
MvaI	CCWGG	2 cut(s)	105, 563
MvnI	CGCG	3 cut(s)	88, 771, 945
NarI	GGCGCC	1 cut(s)	83
NciI	CCSGG	1 cut(s)	621
NdeII	GATC	7 cut(s)	227, 314, 409, 473, 529, 604, 635
NlaIII	CATG	6 cut(s)	277, 321, 592, 619, 673, 724
NlaIV	GGNNCC	4 cut(s)	6, 84, 559, 630
NmuCI	GTSAC	4 cut(s)	221, 413, 599, 875
NspI	RCATGY	2 cut(s)	619, 673
PaeI	GCATGC	1 cut(s)	673
PceI	AGGCCT	1 cut(s)	289
PcsI	WCGNNNNNNNCGW	2 cut(s)	201, 463
PctI	GAATGC	1 cut(s)	743
PfeI	GAWTC	3 cut(s)	394, 676, 764
PkrI	GCNGC	9 cut(s)	28, 31, 34, 37, 40, 87, 102, 114, 240
PluTI	GGCGCC	1 cut(s)	86
Psp6I	CCWGG	2 cut(s)	103, 561
PspEI	GGTNACC	1 cut(s)	221
PspGI	CCWGG	2 cut(s)	103, 561
PspN4I	GGNNCC	4 cut(s)	6, 84, 559, 630
PsuI	RGATCY	2 cut(s)	529, 635
PvuII	CAGCTG	1 cut(s)	38
SaqAI	TTAA	4 cut(s)	575, 750, 852, 1035
SatI	GCNGC	9 cut(s)	27, 30, 33, 36, 39, 86, 101, 113, 239
Sau3AI	GATC	7 cut(s)	227, 314, 409, 473, 529, 604, 635
ScrFI	CCNGG	3 cut(s)	105, 563, 621
SduI	GDGCHC	1 cut(s)	436
SfaNI	GCATC	3 cut(s)	436, 865, 981
SfoI	GGCGCC	1 cut(s)	84
SmlI	CTYRAG	1 cut(s)	441
SmoI	CTYRAG	1 cut(s)	441
SphI	GCATGC	1 cut(s)	673
Sse9I	AATT	4 cut(s)	161, 375, 593, 1009
SseBI	AGGCCT	1 cut(s)	289
SsiI	CCGC	8 cut(s)	26, 32, 86, 101, 113, 140, 639, 945
SspDI	GGCGCC	1 cut(s)	82
StuI	AGGCCT	1 cut(s)	289
StyD4I	CCNGG	3 cut(s)	103, 561, 619
StyI	CCWWGG	2 cut(s)	684, 987
TaaI	ACNGT	7 cut(s)	53, 169, 665, 784, 881, 1031, 1040
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	1 cut(s)	958
TaqII	GACCGA	1 cut(s)	240
TasI	AATT	4 cut(s)	161, 375, 593, 1009
TauI	GCSGC	5 cut(s)	29, 35, 88, 103, 115
TfiI	GAWTC	3 cut(s)	394, 676, 764
Tru1I	TTAA	4 cut(s)	575, 750, 852, 1035
Tru9I	TTAA	4 cut(s)	575, 750, 852, 1035
TscAI	CASTG	2 cut(s)	604, 1036
TseFI	GTSAC	4 cut(s)	221, 413, 599, 875
TseI	GCWGC	4 cut(s)	29, 35, 38, 238
Tsp45I	GTSAC	4 cut(s)	221, 413, 599, 875
TspDTI	ATGAA	4 cut(s)	143, 290, 510, 818
TspRI	CASTG	2 cut(s)	604, 1036
XapI	RAATTY	2 cut(s)	161, 593
XceI	RCATGY	2 cut(s)	619, 673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.