Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000394.1

Orthogroup ID

OG0007691

Physical Location & Seq

Genomic Coordinates Reverse (-)

79226 .. 80158

Gene Structure 933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000394.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atgggttcccttgcttctgcattaacagcattgcacatggaattcagtgatgatctcacttacatgcctggcatggctcctagatctgcaaatcattccaagtttgaagatggtggaatgcagattctttccaaagaagatactgagacattggaacagtgcagagccatgtgtaaaagaggagaatgccctcctcttacggttgttttcgatgcatgtgaaggttttacagtagaggctgatgagcagattaaggatctcacttttattgctgagtatacgggtgatgtcgattacattaagcatcgggagaatgacgactgtgacagcatgatgacccttctcttagcactcaatccatctaagagtcttgtcatctgtcctgataaacgtggaaacattgctcgatttatcaatggaatcaacaaccattctctggagggtaagaagaagcagaattgtaaatgtgtgagatacagtgtcaacgatgaatgccgggtcttattggttgctactcgtgatattgctaaaggagagaggttatattatgattataatggatatgagcatgaataccctactgaaaattttgtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009292 GO:0009294 GO:0009507 GO:0009536 GO:0009555 GO:0009889 GO:0009987 GO:0010556 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0046976 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051276 GO:0051704 GO:0051726 GO:0060255 GO:0065007 GO:0070734 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD SET

Protein Analysis

198

Amino Acids

22.38

Weight (kDa)

4.91

Isoelectric Point (pI)

34.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007691)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09790 AT5G09790
fragaria_vesca	FvH4_1g24041 FvH4_1g24041 FvH4_1g24041 FvH4_1g24041
malus_domestica	MD01G1012000.v1.1 MD15G1338000.v1.1
pyrus_communis	pycom01g04290 pycom15g28850
rosa_chinensis	RchiOBHm_Chr2g0120191
rosa_laevigata	RLG00000018530 RLG00000018538
rosa_multiflora	Rmu_sc0000394.1_g000029 Rmu_sc0004700.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123630
rosa_rugosa	Rorug02G0227600
rosa_samantha	Rh2AG284200 Rh2AG284300 Rh2BG295400 Rh2CG272800 Rh2DG309200 Rh2DG309300
rosa_wichuraiana	Rw2G022770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	555
AccB7I	CCANNNNNTGG	1 cut(s)	436
AccI	GTMKAC	1 cut(s)	278
AclWI	GGATC	1 cut(s)	264
AcsI	RAATTY	2 cut(s)	41, 586
AfiI	CCNNNNNNNGG	1 cut(s)	436
AgsI	TTSAA	1 cut(s)	107
AjnI	CCWGG	1 cut(s)	67
Alw26I	GTCTC	1 cut(s)	140
AlwI	GGATC	1 cut(s)	264
ApoI	RAATTY	2 cut(s)	41, 586
AsuC2I	CCSGG	1 cut(s)	497
AsuHPI	GGTGA	1 cut(s)	296
BauI	CACGAG	1 cut(s)	516
BccI	CCATC	2 cut(s)	104, 367
BciT130I	CCWGG	1 cut(s)	69
BcnI	CCSGG	1 cut(s)	497
BcoDI	GTCTC	1 cut(s)	140
BfaI	CTAG	1 cut(s)	81
BglII	AGATCT	1 cut(s)	83
Bme1390I	CCNGG	2 cut(s)	69, 497
BmiI	GGNNCC	2 cut(s)	7, 78
BmrFI	CCNGG	2 cut(s)	69, 497
BmsI	GCATC	2 cut(s)	202, 313
BpmI	CTGGAG	1 cut(s)	458
BpuMI	CCSGG	1 cut(s)	497
Bsc4I	CCNNNNNNNGG	1 cut(s)	436
Bse3DI	GCAATG	2 cut(s)	29, 399
BseBI	CCWGG	1 cut(s)	69
BseLI	CCNNNNNNNGG	1 cut(s)	436
BseMI	GCAATG	2 cut(s)	29, 399
BseMII	CTCAG	2 cut(s)	135, 264
BseRI	GAGGAG	2 cut(s)	183, 195
BsgI	GTGCAG	1 cut(s)	181
BsiSI	CCGG	1 cut(s)	496
BslI	CCNNNNNNNGG	1 cut(s)	436
BsmAI	GTCTC	1 cut(s)	140
BsmI	GAATGC	3 cut(s)	123, 191, 497
Bsp143I	GATC	3 cut(s)	52, 83, 256
BspCNI	CTCAG	2 cut(s)	136, 265
BspLI	GGNNCC	2 cut(s)	7, 78
BspPI	GGATC	1 cut(s)	264
BsrDI	GCAATG	2 cut(s)	29, 399
BssMI	GATC	3 cut(s)	52, 83, 256
BssNAI	GTATAC	1 cut(s)	279
BssSI	CACGAG	1 cut(s)	516
Bst1107I	GTATAC	1 cut(s)	279
Bst2BI	CACGAG	1 cut(s)	516
Bst2UI	CCWGG	1 cut(s)	69
Bst4CI	ACNGT	5 cut(s)	159, 202, 232, 323, 479
BstDEI	CTNAG	4 cut(s)	144, 273, 346, 363
BstKTI	GATC	3 cut(s)	55, 86, 259
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	3 cut(s)	52, 83, 256
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNI	CCWGG	1 cut(s)	69
BstNSI	RCATGY	2 cut(s)	67, 219
BstSCI	CCNGG	2 cut(s)	67, 495
BstX2I	RGATCY	2 cut(s)	83, 256
BstYI	RGATCY	2 cut(s)	83, 256
BstZ17I	GTATAC	1 cut(s)	279
BtsIMutI	CAGTG	3 cut(s)	52, 164, 484
CviAII	CATG	7 cut(s)	37, 64, 73, 169, 216, 331, 569
CviJI	RGCY	3 cut(s)	77, 167, 239
CviKI_1	RGCY	3 cut(s)	77, 167, 239
DdeI	CTNAG	4 cut(s)	144, 273, 346, 363
DpnI	GATC	3 cut(s)	54, 85, 258
DpnII	GATC	3 cut(s)	52, 83, 256
EcoRI	GAATTC	1 cut(s)	41
EcoRII	CCWGG	1 cut(s)	67
EcoT22I	ATGCAT	1 cut(s)	217
FaeI	CATG	7 cut(s)	40, 67, 76, 172, 219, 334, 572
FatI	CATG	7 cut(s)	36, 63, 72, 168, 215, 330, 568
FblI	GTMKAC	1 cut(s)	278
FspBI	CTAG	1 cut(s)	81
GsuI	CTGGAG	1 cut(s)	458
HapII	CCGG	1 cut(s)	496
Hin1II	CATG	7 cut(s)	40, 67, 76, 172, 219, 334, 572
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HinfI	GANTC	3 cut(s)	124, 367, 420
HpaII	CCGG	1 cut(s)	496
HphI	GGTGA	1 cut(s)	296
Hpy166II	GTNNAC	2 cut(s)	279, 484
Hpy188III	TCNNGA	4 cut(s)	308, 383, 437, 518
Hpy8I	GTNNAC	2 cut(s)	279, 484
HpyAV	CCTTC	2 cut(s)	215, 350
HpyCH4III	ACNGT	5 cut(s)	159, 202, 232, 323, 479
HpyCH4IV	ACGT	1 cut(s)	391
HpyCH4V	TGCA	6 cut(s)	20, 34, 89, 121, 162, 215
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	4 cut(s)	144, 273, 346, 363
HpySE526I	ACGT	1 cut(s)	391
Hsp92II	CATG	7 cut(s)	40, 67, 76, 172, 219, 334, 572
Kzo9I	GATC	3 cut(s)	52, 83, 256
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	5 cut(s)	54, 81, 396, 422, 509
LweI	GCATC	2 cut(s)	202, 313
MaeI	CTAG	1 cut(s)	81
MaeII	ACGT	1 cut(s)	391
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	3 cut(s)	54, 85, 258
MboI	GATC	3 cut(s)	52, 83, 256
MboII	GAAGA	3 cut(s)	119, 149, 460
MflI	RGATCY	2 cut(s)	83, 256
MluCI	AATT	3 cut(s)	41, 457, 586
MlyI	GAGTC	1 cut(s)	376
MnlI	CCTC	6 cut(s)	173, 201, 204, 229, 433, 531
Mph1103I	ATGCAT	1 cut(s)	217
MseI	TTAA	3 cut(s)	23, 252, 300
MslI	CAYNNNNRTG	1 cut(s)	62
MspI	CCGG	1 cut(s)	496
MspR9I	CCNGG	2 cut(s)	69, 497
Mva1269I	GAATGC	3 cut(s)	123, 191, 497
MvaI	CCWGG	1 cut(s)	69
MwoI	GCNNNNNNNGC	1 cut(s)	26
NciI	CCSGG	1 cut(s)	497
NdeII	GATC	3 cut(s)	52, 83, 256
NlaIII	CATG	7 cut(s)	40, 67, 76, 172, 219, 334, 572
NlaIV	GGNNCC	2 cut(s)	7, 78
NmuCI	GTSAC	1 cut(s)	323
NsiI	ATGCAT	1 cut(s)	217
NspI	RCATGY	2 cut(s)	67, 219
PctI	GAATGC	3 cut(s)	123, 191, 497
PfeI	GAWTC	2 cut(s)	124, 420
PflMI	CCANNNNNTGG	1 cut(s)	436
PleI	GAGTC	1 cut(s)	375
PpsI	GAGTC	1 cut(s)	375
PsiI	TTATAA	1 cut(s)	555
Psp6I	CCWGG	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	67
PspN4I	GGNNCC	2 cut(s)	7, 78
PsuI	RGATCY	2 cut(s)	83, 256
RseI	CAYNNNNRTG	1 cut(s)	62
SaqAI	TTAA	3 cut(s)	23, 252, 300
Sau3AI	GATC	3 cut(s)	52, 83, 256
SchI	GAGTC	1 cut(s)	376
ScrFI	CCNGG	2 cut(s)	69, 497
SetI	ASST	3 cut(s)	226, 394, 542
SfaNI	GCATC	2 cut(s)	202, 313
SmiMI	CAYNNNNRTG	1 cut(s)	62
Sse9I	AATT	3 cut(s)	41, 457, 586
SspMI	CTAG	1 cut(s)	81
StyD4I	CCNGG	2 cut(s)	67, 495
TaaI	ACNGT	5 cut(s)	159, 202, 232, 323, 479
TaiI	ACGT	1 cut(s)	394
TaqI	TCGA	3 cut(s)	210, 291, 406
TasI	AATT	3 cut(s)	41, 457, 586
TfiI	GAWTC	2 cut(s)	124, 420
Tru1I	TTAA	3 cut(s)	23, 252, 300
Tru9I	TTAA	3 cut(s)	23, 252, 300
TscAI	CASTG	3 cut(s)	52, 164, 484
TseFI	GTSAC	1 cut(s)	323
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	2 cut(s)	504, 585
TspRI	CASTG	3 cut(s)	52, 164, 484
Van91I	CCANNNNNTGG	1 cut(s)	436
XapI	RAATTY	2 cut(s)	41, 586
XceI	RCATGY	2 cut(s)	67, 219
XmiI	GTMKAC	1 cut(s)	278
XspI	CTAG	1 cut(s)	81
Zsp2I	ATGCAT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.