Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0007691

Physical Location & Seq

Genomic Coordinates Forward (+)

37855110 .. 37877702

Gene Structure 22593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG309300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCGGAGTGCCTCTTGCCGGACGGAGGCCAACAGCATCCTAGACCAGTTTGCAGTGAAGACGAAGGCCAAAGAGATCGAGGTCGGAGGTCTGGGCAGCGTGGTCGACTGCAAAGTGGCAGTCCGATCAAGGTCGACTGGAAAGTGGTAGTTGGCGAGTCCACCCGACTGCAAACTAGTCCAGGATGTCTAGAGGATGCTCGAAAGCGCCGGAGATGTTCAGGATCATTAATGTTGCAGAAGAGAAGAAGAAGACTATTGCCATTTATTCCATCAGAGGATCCTGCTCAAAGGCTGAAACAAATGGGTTCCCTTGCTTCTGCATTAACAGCATTGCACATGGAATTCAGTGATGATCTCACTTACATGCCTGGCATGGCTCCTAGATCTGCAAATCATTCCAAGTTTGAAGATGGTGGAATGCAGATTCTTTCCAAAGAAGATACTGAGACATTGGAACAGTGCAGCCATGTTTTTACAGTAGAGGCTGATGAGCAGATTAAGGATCTCACATTTATTGCTGAGTATACGGGTGATGTCGATTACATTAAGCATCGGGAGAGTGACGACTGTGACAGCATGATGACCCTTCTCTTAGCACTCAATCCATCTAAGAGTCTTATCATCTGTCCTGATAAACGTGGAAACATTGCTCGATTTATCAATGGAATCAACAACCATTCTCTGGAGGGTAAGAAGAAGCAGAATTGTAAATGTGTGAGATACAGTGTCAACGATGAATGCCGGGTCTTATTGGTTGCTACTCGTGATATTGCTAAAGGAGAGAGGTTATATTATGATTATAATGGACATGAGCATGAATACCCTACTGAACATTTTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009292 GO:0009294 GO:0009507 GO:0009536 GO:0009555 GO:0009889 GO:0009987 GO:0010556 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0046976 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051276 GO:0051704 GO:0051726 GO:0060255 GO:0065007 GO:0070734 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD SET

Protein Analysis

281

Amino Acids

31.88

Weight (kDa)

6.76

Isoelectric Point (pI)

57.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SET	PF00856	161 - 269	7.4e-12	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007691)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09790 AT5G09790
fragaria_vesca	FvH4_1g24041 FvH4_1g24041 FvH4_1g24041 FvH4_1g24041
malus_domestica	MD01G1012000.v1.1 MD15G1338000.v1.1
pyrus_communis	pycom01g04290 pycom15g28850
rosa_chinensis	RchiOBHm_Chr2g0120191
rosa_laevigata	RLG00000018530 RLG00000018538
rosa_multiflora	Rmu_sc0000394.1_g000029 Rmu_sc0004700.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123630
rosa_rugosa	Rorug02G0227600
rosa_samantha	Rh2AG284200 Rh2AG284300 Rh2BG295400 Rh2CG272800 Rh2DG309200 Rh2DG309300
rosa_wichuraiana	Rw2G022770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	804
AccB7I	CCANNNNNTGG	1 cut(s)	685
AccI	GTMKAC	3 cut(s)	106, 135, 527
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	4 cut(s)	232, 275, 288, 513
AcsI	RAATTY	1 cut(s)	344
AfiI	CCNNNNNNNGG	3 cut(s)	19, 26, 685
AgsI	TTSAA	1 cut(s)	410
AhlI	ACTAGT	1 cut(s)	176
AjnI	CCWGG	2 cut(s)	181, 370
Alw26I	GTCTC	1 cut(s)	443
AlwI	GGATC	4 cut(s)	232, 275, 288, 513
AoxI	GGCC	2 cut(s)	28, 67
ApeKI	GCWGC	2 cut(s)	97, 465
ApoI	RAATTY	1 cut(s)	344
ArsI	GACNNNNNNTTYG	2 cut(s)	106, 138
AseI	ATTAAT	1 cut(s)	230
AspLEI	GCGC	1 cut(s)	210
AsuC2I	CCSGG	1 cut(s)	746
AsuHPI	GGTGA	1 cut(s)	545
BamHI	GGATCC	1 cut(s)	280
BauI	CACGAG	1 cut(s)	765
BbsI	GAAGAC	2 cut(s)	66, 259
BbvI	GCAGC	2 cut(s)	109, 477
BccI	CCATC	3 cut(s)	280, 407, 616
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BciT130I	CCWGG	2 cut(s)	183, 372
BcnI	CCSGG	1 cut(s)	746
BcoDI	GTCTC	1 cut(s)	443
BcuI	ACTAGT	1 cut(s)	176
BfaI	CTAG	4 cut(s)	42, 177, 191, 384
BfoI	RGCGCY	1 cut(s)	211
BglII	AGATCT	1 cut(s)	386
BisI	GCNGC	2 cut(s)	98, 466
BlsI	GCNGC	2 cut(s)	99, 467
Bme1390I	CCNGG	3 cut(s)	183, 372, 746
BmiI	GGNNCC	3 cut(s)	282, 310, 381
BmrFI	CCNGG	3 cut(s)	183, 372, 746
BmsI	GCATC	3 cut(s)	46, 187, 562
BpiI	GAAGAC	2 cut(s)	66, 259
BpmI	CTGGAG	1 cut(s)	707
BpuMI	CCSGG	1 cut(s)	746
Bsc4I	CCNNNNNNNGG	3 cut(s)	19, 26, 685
Bse1I	ACTGG	2 cut(s)	47, 143
Bse3DI	GCAATG	2 cut(s)	332, 648
BseBI	CCWGG	2 cut(s)	183, 372
BseGI	GGATG	3 cut(s)	37, 191, 202
BseLI	CCNNNNNNNGG	3 cut(s)	19, 26, 685
BseMI	GCAATG	2 cut(s)	332, 648
BseMII	CTCAG	2 cut(s)	438, 513
BseNI	ACTGG	2 cut(s)	47, 143
BseXI	GCAGC	2 cut(s)	109, 477
BsgI	GTGCAG	1 cut(s)	484
BshFI	GGCC	2 cut(s)	30, 69
BsiSI	CCGG	3 cut(s)	20, 211, 745
BslI	CCNNNNNNNGG	3 cut(s)	19, 26, 685
BsmAI	GTCTC	1 cut(s)	443
BsmI	GAATGC	2 cut(s)	426, 746
BsnI	GGCC	2 cut(s)	30, 69
Bsp143I	GATC	7 cut(s)	76, 126, 224, 280, 355, 386, 505
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	2 cut(s)	30, 69
BspCNI	CTCAG	2 cut(s)	439, 514
BspLI	GGNNCC	3 cut(s)	282, 310, 381
BspPI	GGATC	4 cut(s)	232, 275, 288, 513
BsrDI	GCAATG	2 cut(s)	332, 648
BsrI	ACTGG	2 cut(s)	47, 143
BssMI	GATC	7 cut(s)	76, 126, 224, 280, 355, 386, 505
BssNAI	GTATAC	1 cut(s)	528
BssSI	CACGAG	1 cut(s)	765
Bst1107I	GTATAC	1 cut(s)	528
Bst2BI	CACGAG	1 cut(s)	765
Bst2UI	CCWGG	2 cut(s)	183, 372
Bst4CI	ACNGT	4 cut(s)	462, 481, 572, 728
Bst6I	CTCTTC	1 cut(s)	236
BstDEI	CTNAG	4 cut(s)	447, 522, 595, 612
BstF5I	GGATG	3 cut(s)	37, 191, 202
BstH2I	RGCGCY	1 cut(s)	211
BstHHI	GCGC	1 cut(s)	210
BstKTI	GATC	7 cut(s)	79, 129, 227, 283, 358, 389, 508
BstMAI	GTCTC	1 cut(s)	443
BstMBI	GATC	7 cut(s)	76, 126, 224, 280, 355, 386, 505
BstMWI	GCNNNNNNNGC	1 cut(s)	329
BstNI	CCWGG	2 cut(s)	183, 372
BstNSI	RCATGY	1 cut(s)	370
BstSCI	CCNGG	3 cut(s)	181, 370, 744
BstV1I	GCAGC	2 cut(s)	109, 477
BstV2I	GAAGAC	2 cut(s)	66, 259
BstX2I	RGATCY	3 cut(s)	280, 386, 505
BstYI	RGATCY	3 cut(s)	280, 386, 505
BstZ17I	GTATAC	1 cut(s)	528
BsuRI	GGCC	2 cut(s)	30, 69
BtsCI	GGATG	3 cut(s)	37, 191, 202
BtsI	GCAGTG	1 cut(s)	61
BtsIMutI	CAGTG	4 cut(s)	61, 355, 467, 733
CfoI	GCGC	1 cut(s)	210
CviAII	CATG	7 cut(s)	340, 367, 376, 470, 580, 812, 818
CviJI	RGCY	6 cut(s)	30, 69, 295, 380, 468, 488
CviKI_1	RGCY	6 cut(s)	30, 69, 295, 380, 468, 488
DdeI	CTNAG	4 cut(s)	447, 522, 595, 612
DpnI	GATC	7 cut(s)	78, 128, 226, 282, 357, 388, 507
DpnII	GATC	7 cut(s)	76, 126, 224, 280, 355, 386, 505
Eam1104I	CTCTTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	236
EciI	GGCGGA	1 cut(s)	20
EcoRI	GAATTC	1 cut(s)	344
EcoRII	CCWGG	2 cut(s)	181, 370
FaeI	CATG	7 cut(s)	343, 370, 379, 473, 583, 815, 821
FatI	CATG	7 cut(s)	339, 366, 375, 469, 579, 811, 817
FblI	GTMKAC	3 cut(s)	106, 135, 527
Fnu4HI	GCNGC	2 cut(s)	98, 466
FokI	GGATG	3 cut(s)	24, 198, 209
Fsp4HI	GCNGC	2 cut(s)	98, 466
FspBI	CTAG	4 cut(s)	42, 177, 191, 384
GlaI	GCGC	1 cut(s)	209
GluI	GCNGC	2 cut(s)	98, 466
GsuI	CTGGAG	1 cut(s)	707
HaeII	RGCGCY	1 cut(s)	211
HaeIII	GGCC	2 cut(s)	30, 69
HapII	CCGG	3 cut(s)	20, 211, 745
HhaI	GCGC	1 cut(s)	210
Hin1II	CATG	7 cut(s)	343, 370, 379, 473, 583, 815, 821
Hin6I	GCGC	1 cut(s)	208
HinP1I	GCGC	1 cut(s)	208
HincII	GTYRAC	3 cut(s)	107, 136, 733
HindII	GTYRAC	3 cut(s)	107, 136, 733
HinfI	GANTC	4 cut(s)	158, 427, 616, 669
HpaII	CCGG	3 cut(s)	20, 211, 745
HphI	GGTGA	1 cut(s)	545
Hpy166II	GTNNAC	5 cut(s)	107, 136, 162, 528, 733
Hpy188I	TCNGA	3 cut(s)	87, 126, 277
Hpy188III	TCNNGA	6 cut(s)	191, 222, 557, 632, 686, 767
Hpy8I	GTNNAC	5 cut(s)	107, 136, 162, 528, 733
HpyAV	CCTTC	2 cut(s)	59, 599
HpyCH4III	ACNGT	4 cut(s)	462, 481, 572, 728
HpyCH4IV	ACGT	1 cut(s)	640
HpyCH4V	TGCA	9 cut(s)	54, 112, 172, 238, 323, 337, 392, 424, 465
HpyF10VI	GCNNNNNNNGC	1 cut(s)	329
HpyF3I	CTNAG	4 cut(s)	447, 522, 595, 612
HpySE526I	ACGT	1 cut(s)	640
Hsp92II	CATG	7 cut(s)	343, 370, 379, 473, 583, 815, 821
HspAI	GCGC	1 cut(s)	208
Kzo9I	GATC	7 cut(s)	76, 126, 224, 280, 355, 386, 505
LmnI	GCTCC	1 cut(s)	385
Lsp1109I	GCAGC	2 cut(s)	109, 477
LweI	GCATC	3 cut(s)	46, 187, 562
MaeI	CTAG	4 cut(s)	42, 177, 191, 384
MaeII	ACGT	1 cut(s)	640
MaeIII	GTNAC	2 cut(s)	563, 572
MalI	GATC	7 cut(s)	78, 128, 226, 282, 357, 388, 507
MboI	GATC	7 cut(s)	76, 126, 224, 280, 355, 386, 505
MboII	GAAGA	8 cut(s)	71, 253, 258, 261, 264, 422, 452, 709
MflI	RGATCY	3 cut(s)	280, 386, 505
MluCI	AATT	2 cut(s)	344, 706
MlyI	GAGTC	2 cut(s)	167, 625
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	9 cut(s)	20, 23, 74, 81, 187, 271, 478, 682, 780
MseI	TTAA	4 cut(s)	230, 326, 501, 549
MslI	CAYNNNNRTG	2 cut(s)	365, 816
MspI	CCGG	3 cut(s)	20, 211, 745
MspR9I	CCNGG	3 cut(s)	183, 372, 746
Mva1269I	GAATGC	2 cut(s)	426, 746
MvaI	CCWGG	2 cut(s)	183, 372
MwoI	GCNNNNNNNGC	1 cut(s)	329
NciI	CCSGG	1 cut(s)	746
NdeII	GATC	7 cut(s)	76, 126, 224, 280, 355, 386, 505
NlaIII	CATG	7 cut(s)	343, 370, 379, 473, 583, 815, 821
NlaIV	GGNNCC	3 cut(s)	282, 310, 381
NmuCI	GTSAC	2 cut(s)	563, 572
NspI	RCATGY	1 cut(s)	370
PctI	GAATGC	2 cut(s)	426, 746
PfeI	GAWTC	2 cut(s)	427, 669
PflMI	CCANNNNNTGG	1 cut(s)	685
PfoI	TCCNGGA	1 cut(s)	181
PkrI	GCNGC	2 cut(s)	99, 467
PleI	GAGTC	2 cut(s)	166, 624
PpsI	GAGTC	2 cut(s)	166, 624
PshBI	ATTAAT	1 cut(s)	230
PsiI	TTATAA	1 cut(s)	804
Psp6I	CCWGG	2 cut(s)	181, 370
PspGI	CCWGG	2 cut(s)	181, 370
PspN4I	GGNNCC	3 cut(s)	282, 310, 381
PsuI	RGATCY	3 cut(s)	280, 386, 505
RseI	CAYNNNNRTG	2 cut(s)	365, 816
SalI	GTCGAC	2 cut(s)	105, 134
SaqAI	TTAA	4 cut(s)	230, 326, 501, 549
SatI	GCNGC	2 cut(s)	98, 466
Sau3AI	GATC	7 cut(s)	76, 126, 224, 280, 355, 386, 505
SchI	GAGTC	2 cut(s)	167, 625
ScrFI	CCNGG	3 cut(s)	183, 372, 746
SetI	ASST	5 cut(s)	85, 92, 135, 643, 791
SfaNI	GCATC	3 cut(s)	46, 187, 562
SmiMI	CAYNNNNRTG	2 cut(s)	365, 816
SpeI	ACTAGT	1 cut(s)	176
Sse9I	AATT	2 cut(s)	344, 706
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	4 cut(s)	42, 177, 191, 384
StyD4I	CCNGG	3 cut(s)	181, 370, 744
TaaI	ACNGT	4 cut(s)	462, 481, 572, 728
TaiI	ACGT	1 cut(s)	643
TaqI	TCGA	6 cut(s)	79, 106, 135, 202, 540, 655
TasI	AATT	2 cut(s)	344, 706
TfiI	GAWTC	2 cut(s)	427, 669
Tru1I	TTAA	4 cut(s)	230, 326, 501, 549
Tru9I	TTAA	4 cut(s)	230, 326, 501, 549
TscAI	CASTG	4 cut(s)	61, 355, 467, 733
TseFI	GTSAC	2 cut(s)	563, 572
TseI	GCWGC	2 cut(s)	97, 465
Tsp45I	GTSAC	2 cut(s)	563, 572
TspDTI	ATGAA	2 cut(s)	753, 834
TspGWI	ACGGA	1 cut(s)	39
TspRI	CASTG	4 cut(s)	61, 355, 467, 733
Van91I	CCANNNNNTGG	1 cut(s)	685
VspI	ATTAAT	1 cut(s)	230
XapI	RAATTY	1 cut(s)	344
XbaI	TCTAGA	1 cut(s)	190
XceI	RCATGY	1 cut(s)	370
XmiI	GTMKAC	3 cut(s)	106, 135, 527
XspI	CTAG	4 cut(s)	42, 177, 191, 384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.