Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007691

Physical Location & Seq

Genomic Coordinates Reverse (-)

57525857 .. 57530781

Gene Structure 4925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00123630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGAGAGGGCGCGATTCTCCGTGGCGGAGAGAACCGATTACAGCGATGTCAGCTGCGAGCAATGTGGCTCCGGCGACCGAGCTGATGAGCTGCTCCTCTGCGACAAATGCGATATGGGCTTCCACATGAAATGCCTCCGGCCGATCGTCGCCATTCTCCCGATTGGGTCCTGGCTCTGCCCTAAGTGTTCCGGACACAGAAGAGTAAGAAGTTTTTCGCAGAAGAAGATCATCGATTTCTTTCGGATTCAGAAATGTAGTGATGAGAAAGACAAATGTGCTTCTTCTCAAGGCTATGACTTTTTGATATTGATACTTGGGATTCCTGATATGAGGGTGAGACTTTTGGGATATGCATCATGTGCTTACACTTTCAAAAGTTGCCACTCAATAGTGATCATAGTGGAAGGGGAAGATGCCACACCATTGATGCAGTTACATGCTCGAAAGCGCCGGAGACGTTCAGGATCATTAGTGTTGCAGAAGAGAAGAAGAAGAATATTGCCATTTATTCCATCAGAGGATCCTGCTCAAAGGCTAAAACAAATGGGTTCCCTTGCTTCTGCGTTAACAGCATTGCACATGGAATTCAGTGATGATCTCACTTACATGCCTGGCATGGCTCCTAGATCTGCAAATCATTCCAAGTTTGAAGATGGTGGAATGCAGATTCTTTCCAAAGAAGATGCTGAGACATTGGAACACTGCAGAGCCATGTGTAAAAGAGGAGAATGCCCTCCTCTTACAGTTGTTTTCGATGCATGTGAAGGTTTTACAGTAGAGGCTGATGAGCAGATTAAGGATCTCACTTTTATTGCTGAGTATACGGGTGATGTTGATTACATTAAGCATCGGGAGAATGACGACTGTGACAGCATGATGACCCTTCTCTTAGCACTCAATCCATCTAAGAGTCTTGTCATCTGTCCTGATAAACGTGGAAACATTGCTCGATTTATCAATGGAATCAACAACCATTCTCTGGAGGGTAAGAAGAAGCAGAACTGTAAATGTGTGAGATACAGTGTCAACGATGAATGCCGGGTCTTATTGGTTGCTACTCGTGATATTGCTAAAGGAGAGAGGTTATATTATGATTATAATGGATATGAGCATGAATACCCTACTGAAAATTTTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009292 GO:0009294 GO:0009507 GO:0009536 GO:0009555 GO:0009889 GO:0009987 GO:0010556 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0046976 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051276 GO:0051704 GO:0051726 GO:0060255 GO:0065007 GO:0070734 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD SET

Protein Analysis

380

Amino Acids

43.23

Weight (kDa)

7.44

Isoelectric Point (pI)

50.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	19 - 63	4.2e-10	PHD-finger
SET	PF00856	257 - 368	4.2e-12	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007691)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09790 AT5G09790
fragaria_vesca	FvH4_1g24041 FvH4_1g24041 FvH4_1g24041 FvH4_1g24041
malus_domestica	MD01G1012000.v1.1 MD15G1338000.v1.1
pyrus_communis	pycom01g04290 pycom15g28850
rosa_chinensis	RchiOBHm_Chr2g0120191
rosa_laevigata	RLG00000018530 RLG00000018538
rosa_multiflora	Rmu_sc0000394.1_g000029 Rmu_sc0004700.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123630
rosa_rugosa	Rorug02G0227600
rosa_samantha	Rh2AG284200 Rh2AG284300 Rh2BG295400 Rh2CG272800 Rh2DG309200 Rh2DG309300
rosa_wichuraiana	Rw2G022770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1101
AccB7I	CCANNNNNTGG	1 cut(s)	982
AccI	GTMKAC	1 cut(s)	824
AccII	CGCG	1 cut(s)	13
AccIII	TCCGGA	1 cut(s)	191
AciI	CCGC	1 cut(s)	26
AclWI	GGATC	4 cut(s)	475, 518, 531, 810
AcoI	YGGCCR	1 cut(s)	140
AcsI	RAATTY	2 cut(s)	587, 1132
AfiI	CCNNNNNNNGG	1 cut(s)	982
AgsI	TTSAA	2 cut(s)	376, 653
AjnI	CCWGG	2 cut(s)	170, 613
AluBI	AGCT	3 cut(s)	54, 83, 91
AluI	AGCT	3 cut(s)	54, 83, 91
Alw26I	GTCTC	3 cut(s)	334, 451, 686
AlwI	GGATC	4 cut(s)	475, 518, 531, 810
Aor13HI	TCCGGA	1 cut(s)	191
AoxI	GGCC	1 cut(s)	140
ApeKI	GCWGC	2 cut(s)	54, 91
ApoI	RAATTY	2 cut(s)	587, 1132
Asp700I	GAANNNNTTC	1 cut(s)	214
AspLEI	GCGC	2 cut(s)	13, 453
AspS9I	GGNCC	1 cut(s)	168
AsuC2I	CCSGG	1 cut(s)	1043
AsuHPI	GGTGA	2 cut(s)	349, 842
AvaII	GGWCC	1 cut(s)	168
BamHI	GGATCC	1 cut(s)	523
BauI	CACGAG	1 cut(s)	1062
BbvI	GCAGC	2 cut(s)	41, 78
BccI	CCATC	3 cut(s)	523, 650, 913
BciT130I	CCWGG	2 cut(s)	172, 615
BclI	TGATCA	1 cut(s)	396
BcnI	CCSGG	1 cut(s)	1043
BcoDI	GTCTC	3 cut(s)	334, 451, 686
BfaI	CTAG	1 cut(s)	627
BfmI	CTRYAG	1 cut(s)	706
BfoI	RGCGCY	1 cut(s)	454
BglII	AGATCT	1 cut(s)	629
BisI	GCNGC	2 cut(s)	55, 92
BlsI	GCNGC	2 cut(s)	56, 93
Bme1390I	CCNGG	3 cut(s)	172, 615, 1043
Bme18I	GGWCC	1 cut(s)	168
BmgT120I	GGNCC	1 cut(s)	168
BmiI	GGNNCC	5 cut(s)	70, 169, 525, 553, 624
BmrFI	CCNGG	3 cut(s)	172, 615, 1043
BmsI	GCATC	6 cut(s)	365, 406, 420, 676, 748, 859
BpmI	CTGGAG	1 cut(s)	1004
BpuEI	CTTGAG	1 cut(s)	273
BpuMI	CCSGG	1 cut(s)	1043
Bsa29I	ATCGAT	1 cut(s)	234
BsaBI	GATNNNNATC	1 cut(s)	355
BsaJI	CCNNGG	1 cut(s)	21
BsaWI	WCCGGW	1 cut(s)	191
Bsc4I	CCNNNNNNNGG	1 cut(s)	982
Bse3DI	GCAATG	3 cut(s)	68, 575, 945
Bse8I	GATNNNNATC	1 cut(s)	355
BseAI	TCCGGA	1 cut(s)	191
BseBI	CCWGG	2 cut(s)	172, 615
BseCI	ATCGAT	1 cut(s)	234
BseDI	CCNNGG	1 cut(s)	21
BseJI	GATNNNNATC	1 cut(s)	355
BseLI	CCNNNNNNNGG	1 cut(s)	982
BseMI	GCAATG	3 cut(s)	68, 575, 945
BseMII	CTCAG	2 cut(s)	681, 810
BseRI	GAGGAG	3 cut(s)	86, 729, 741
BseX3I	CGGCCG	1 cut(s)	140
BseXI	GCAGC	2 cut(s)	41, 78
Bsh1236I	CGCG	1 cut(s)	13
Bsh1285I	CGRYCG	3 cut(s)	79, 143, 147
BshFI	GGCC	1 cut(s)	142
BshVI	ATCGAT	1 cut(s)	234
BsiEI	CGRYCG	3 cut(s)	79, 143, 147
BsiSI	CCGG	5 cut(s)	72, 139, 192, 454, 1042
BslI	CCNNNNNNNGG	1 cut(s)	982
BsmAI	GTCTC	3 cut(s)	334, 451, 686
BsmBI	CGTCTC	1 cut(s)	451
BsmI	GAATGC	3 cut(s)	669, 737, 1043
BsnI	GGCC	1 cut(s)	142
Bsp13I	TCCGGA	1 cut(s)	191
Bsp143I	GATC	8 cut(s)	144, 228, 396, 467, 523, 598, 629, 802
BspACI	CCGC	1 cut(s)	26
BspANI	GGCC	1 cut(s)	142
BspCNI	CTCAG	2 cut(s)	682, 811
BspDI	ATCGAT	1 cut(s)	234
BspEI	TCCGGA	1 cut(s)	191
BspFNI	CGCG	1 cut(s)	13
BspLI	GGNNCC	5 cut(s)	70, 169, 525, 553, 624
BspMAI	CTGCAG	1 cut(s)	710
BspPI	GGATC	4 cut(s)	475, 518, 531, 810
BsrDI	GCAATG	3 cut(s)	68, 575, 945
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	8 cut(s)	144, 228, 396, 467, 523, 598, 629, 802
BssNAI	GTATAC	1 cut(s)	825
BssSI	CACGAG	1 cut(s)	1062
Bst1107I	GTATAC	1 cut(s)	825
Bst2BI	CACGAG	1 cut(s)	1062
Bst2UI	CCWGG	2 cut(s)	172, 615
Bst4CI	ACNGT	5 cut(s)	748, 778, 869, 1007, 1025
Bst6I	CTCTTC	2 cut(s)	196, 479
BstAPI	GCANNNNNTGC	1 cut(s)	362
BstC8I	GCNNGC	1 cut(s)	59
BstDEI	CTNAG	5 cut(s)	183, 690, 819, 892, 909
BstDSI	CCRYGG	1 cut(s)	21
BstFNI	CGCG	1 cut(s)	13
BstH2I	RGCGCY	1 cut(s)	454
BstHHI	GCGC	2 cut(s)	13, 453
BstKTI	GATC	8 cut(s)	147, 231, 399, 470, 526, 601, 632, 805
BstMAI	GTCTC	3 cut(s)	334, 451, 686
BstMBI	GATC	8 cut(s)	144, 228, 396, 467, 523, 598, 629, 802
BstMCI	CGRYCG	3 cut(s)	79, 143, 147
BstMWI	GCNNNNNNNGC	5 cut(s)	51, 108, 117, 362, 572
BstNI	CCWGG	2 cut(s)	172, 615
BstNSI	RCATGY	3 cut(s)	443, 613, 765
BstSCI	CCNGG	3 cut(s)	170, 613, 1041
BstSFI	CTRYAG	1 cut(s)	706
BstUI	CGCG	1 cut(s)	13
BstV1I	GCAGC	2 cut(s)	41, 78
BstX2I	RGATCY	3 cut(s)	523, 629, 802
BstYI	RGATCY	3 cut(s)	523, 629, 802
BstZ17I	GTATAC	1 cut(s)	825
BstZI	CGGCCG	1 cut(s)	140
Bsu15I	ATCGAT	1 cut(s)	234
BsuRI	GGCC	1 cut(s)	142
BsuTUI	ATCGAT	1 cut(s)	234
BtgI	CCRYGG	1 cut(s)	21
BtgZI	GCGATG	1 cut(s)	60
BtsI	GCAGTG	1 cut(s)	703
BtsIMutI	CAGTG	3 cut(s)	598, 703, 1030
Cac8I	GCNNGC	1 cut(s)	59
CfoI	GCGC	2 cut(s)	13, 453
Cfr13I	GGNCC	1 cut(s)	168
ClaI	ATCGAT	1 cut(s)	234
DdeI	CTNAG	5 cut(s)	183, 690, 819, 892, 909
DpnI	GATC	8 cut(s)	146, 230, 398, 469, 525, 600, 631, 804
DpnII	GATC	8 cut(s)	144, 228, 396, 467, 523, 598, 629, 802
EaeI	YGGCCR	1 cut(s)	140
EagI	CGGCCG	1 cut(s)	140
Eam1104I	CTCTTC	2 cut(s)	196, 479
EarI	CTCTTC	2 cut(s)	196, 479
EciI	GGCGGA	1 cut(s)	41
EclXI	CGGCCG	1 cut(s)	140
Eco47I	GGWCC	1 cut(s)	168
Eco52I	CGGCCG	1 cut(s)	140
EcoO109I	RGGNCCY	1 cut(s)	168
EcoRI	GAATTC	1 cut(s)	587
EcoRII	CCWGG	2 cut(s)	170, 613
EcoT22I	ATGCAT	2 cut(s)	358, 763
Esp3I	CGTCTC	1 cut(s)	451
FbaI	TGATCA	1 cut(s)	396
FblI	GTMKAC	1 cut(s)	824
Fnu4HI	GCNGC	2 cut(s)	55, 92
Fsp4HI	GCNGC	2 cut(s)	55, 92
FspBI	CTAG	1 cut(s)	627
GlaI	GCGC	2 cut(s)	12, 452
GluI	GCNGC	2 cut(s)	55, 92
GsuI	CTGGAG	1 cut(s)	1004
HaeII	RGCGCY	1 cut(s)	454
HaeIII	GGCC	1 cut(s)	142
HapII	CCGG	5 cut(s)	72, 139, 192, 454, 1042
HhaI	GCGC	2 cut(s)	13, 453
Hin6I	GCGC	2 cut(s)	11, 451
HinP1I	GCGC	2 cut(s)	11, 451
HincII	GTYRAC	2 cut(s)	570, 1030
HindII	GTYRAC	2 cut(s)	570, 1030
HinfI	GANTC	6 cut(s)	15, 247, 322, 670, 913, 966
HpaI	GTTAAC	1 cut(s)	570
HpaII	CCGG	5 cut(s)	72, 139, 192, 454, 1042
HphI	GGTGA	2 cut(s)	349, 842
Hpy166II	GTNNAC	3 cut(s)	570, 825, 1030
Hpy188I	TCNGA	3 cut(s)	246, 252, 520
Hpy188III	TCNNGA	8 cut(s)	160, 192, 326, 465, 854, 929, 983, 1064
Hpy8I	GTNNAC	3 cut(s)	570, 825, 1030
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	3 cut(s)	401, 761, 896
HpyCH4III	ACNGT	5 cut(s)	748, 778, 869, 1007, 1025
HpyCH4IV	ACGT	2 cut(s)	460, 937
HpyCH4V	TGCA	8 cut(s)	356, 433, 481, 580, 635, 667, 708, 761
HpyF10VI	GCNNNNNNNGC	5 cut(s)	51, 108, 117, 362, 572
HpyF3I	CTNAG	5 cut(s)	183, 690, 819, 892, 909
HpySE526I	ACGT	2 cut(s)	460, 937
HspAI	GCGC	2 cut(s)	11, 451
Kpn2I	TCCGGA	1 cut(s)	191
Ksp22I	TGATCA	1 cut(s)	396
KspAI	GTTAAC	1 cut(s)	570
Kzo9I	GATC	8 cut(s)	144, 228, 396, 467, 523, 598, 629, 802
LmnI	GCTCC	3 cut(s)	74, 99, 628
Lsp1109I	GCAGC	2 cut(s)	41, 78
LweI	GCATC	6 cut(s)	365, 406, 420, 676, 748, 859
MaeI	CTAG	1 cut(s)	627
MaeII	ACGT	2 cut(s)	460, 937
MaeIII	GTNAC	2 cut(s)	435, 869
MalI	GATC	8 cut(s)	146, 230, 398, 469, 525, 600, 631, 804
MboI	GATC	8 cut(s)	144, 228, 396, 467, 523, 598, 629, 802
MflI	RGATCY	3 cut(s)	523, 629, 802
MluCI	AATT	2 cut(s)	587, 1132
MlyI	GAGTC	1 cut(s)	922
Mph1103I	ATGCAT	2 cut(s)	358, 763
MroI	TCCGGA	1 cut(s)	191
MroXI	GAANNNNTTC	1 cut(s)	214
MseI	TTAA	3 cut(s)	569, 798, 846
MslI	CAYNNNNRTG	1 cut(s)	608
MspA1I	CMGCKG	1 cut(s)	54
MspI	CCGG	5 cut(s)	72, 139, 192, 454, 1042
MspR9I	CCNGG	3 cut(s)	172, 615, 1043
Mva1269I	GAATGC	3 cut(s)	669, 737, 1043
MvaI	CCWGG	2 cut(s)	172, 615
MvnI	CGCG	1 cut(s)	13
MwoI	GCNNNNNNNGC	5 cut(s)	51, 108, 117, 362, 572
NciI	CCSGG	1 cut(s)	1043
NdeII	GATC	8 cut(s)	144, 228, 396, 467, 523, 598, 629, 802
NlaIV	GGNNCC	5 cut(s)	70, 169, 525, 553, 624
NmuCI	GTSAC	1 cut(s)	869
NsiI	ATGCAT	2 cut(s)	358, 763
NspI	RCATGY	3 cut(s)	443, 613, 765
PctI	GAATGC	3 cut(s)	669, 737, 1043
PdmI	GAANNNNTTC	1 cut(s)	214
PfeI	GAWTC	5 cut(s)	15, 247, 322, 670, 966
PflMI	CCANNNNNTGG	1 cut(s)	982
PkrI	GCNGC	2 cut(s)	56, 93
Ple19I	CGATCG	1 cut(s)	147
PleI	GAGTC	1 cut(s)	921
PpsI	GAGTC	1 cut(s)	921
PpuMI	RGGWCCY	1 cut(s)	168
PsiI	TTATAA	1 cut(s)	1101
Psp5II	RGGWCCY	1 cut(s)	168
Psp6I	CCWGG	2 cut(s)	170, 613
PspGI	CCWGG	2 cut(s)	170, 613
PspN4I	GGNNCC	5 cut(s)	70, 169, 525, 553, 624
PspPI	GGNCC	1 cut(s)	168
PspPPI	RGGWCCY	1 cut(s)	168
PstI	CTGCAG	1 cut(s)	710
PsuI	RGATCY	3 cut(s)	523, 629, 802
PvuI	CGATCG	1 cut(s)	147
PvuII	CAGCTG	1 cut(s)	54
RseI	CAYNNNNRTG	1 cut(s)	608
SaqAI	TTAA	3 cut(s)	569, 798, 846
SatI	GCNGC	2 cut(s)	55, 92
Sau3AI	GATC	8 cut(s)	144, 228, 396, 467, 523, 598, 629, 802
Sau96I	GGNCC	1 cut(s)	168
SchI	GAGTC	1 cut(s)	922
ScrFI	CCNGG	3 cut(s)	172, 615, 1043
SetI	ASST	7 cut(s)	56, 85, 93, 463, 772, 940, 1088
SfaNI	GCATC	6 cut(s)	365, 406, 420, 676, 748, 859
SfcI	CTRYAG	1 cut(s)	706
SinI	GGWCC	1 cut(s)	168
SmiMI	CAYNNNNRTG	1 cut(s)	608
SmlI	CTYRAG	1 cut(s)	288
SmoI	CTYRAG	1 cut(s)	288
Sse9I	AATT	2 cut(s)	587, 1132
SsiI	CCGC	1 cut(s)	26
SspI	AATATT	1 cut(s)	501
SspMI	CTAG	1 cut(s)	627
StyD4I	CCNGG	3 cut(s)	170, 613, 1041
TaaI	ACNGT	5 cut(s)	748, 778, 869, 1007, 1025
TaiI	ACGT	2 cut(s)	463, 940
TaqI	TCGA	4 cut(s)	234, 445, 756, 952
TaqII	GACCGA	1 cut(s)	93
TasI	AATT	2 cut(s)	587, 1132
TfiI	GAWTC	5 cut(s)	15, 247, 322, 670, 966
Tru1I	TTAA	3 cut(s)	569, 798, 846
Tru9I	TTAA	3 cut(s)	569, 798, 846
TscAI	CASTG	3 cut(s)	598, 710, 1030
TseFI	GTSAC	1 cut(s)	869
TseI	GCWGC	2 cut(s)	54, 91
Tsp45I	GTSAC	1 cut(s)	869
TspDTI	ATGAA	3 cut(s)	143, 1050, 1131
TspGWI	ACGGA	1 cut(s)	10
TspRI	CASTG	3 cut(s)	598, 710, 1030
Van91I	CCANNNNNTGG	1 cut(s)	982
VpaK11BI	GGWCC	1 cut(s)	168
XapI	RAATTY	2 cut(s)	587, 1132
XceI	RCATGY	3 cut(s)	443, 613, 765
XmiI	GTMKAC	1 cut(s)	824
XmnI	GAANNNNTTC	1 cut(s)	214
XspI	CTAG	1 cut(s)	627
Zsp2I	ATGCAT	2 cut(s)	358, 763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.