Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005160

Physical Location & Seq

Genomic Coordinates Reverse (-)

3055618 .. 3057578

Gene Structure 1961 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G09820.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGACGAGTAACCTTTTCCAGCCACCATCAATGGCAGCTTCACGAGGAGCAATCTCGAGAAGAACAGGAAACGTGAAAGTATTAGTCTCTTTCACCAGTTCTAATGGCAAAACGCTGAGTTTTAGTGACAACTCATTTAGGCTCAGACCCATGTTCATCGGGAAAGTCACAGAACAGAGTTCTTGTTCCTCCCCAAATGAACAACAACAAGATGAAGAACAAGAACAAGAACAAGAAGAGATTACAGTTTCTCATATAAAAGAAGAGCTCTACGAAGCTCTCAAAGGGATCAATAGAGGGATATTCGGAGTTAAGTCGGATAAAAAGACAGAGATCGAGGGACTGGTGAAGCTTTTGGAATGTCGGAATCCGACACCGGAGCCGACTGGAGAGTTAGACAAGATCGGAGGTTGCTGGAAACTCATTTACAGTACAATCACTGTATTGGGTTCTAAACGAACTAAATTGGGTCTTCGAGATTTCGTCTCTCTTGGTGATCTTCTTCAACAGATTGACATTGCTCAGGGCAAAACGGTCCATGTGTTGAAATTCGATGTCCGGGGATTGAATCTACTCGACGGCGAGTTTAGAATCGTCGCTTCCTTCAAGATCTCGTCCAAATCGAGTGTAGAGATTACTTATGAAAGCTCAACGATCAAACCAGACCAGTTGATGAACATATTTAGGAAGAACATGGATCTTCTTTTGGGAATCTTCAACCCCGAGGGACTATTCGAGATTTCGTATCCTTTTTTAATTAAAATCCAAAATCGTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010236 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

259

Amino Acids

29.05

Weight (kDa)

7.66

Isoelectric Point (pI)

46.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	85 - 267	1.1e-29	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09820 AT5G09820 AT5G09820
fragaria_vesca	FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570
malus_domestica	MD15G1343200.v1.1
prunus_persica	Prupe.6G163100_v2.0.a1 Prupe.6G163100_v2.0.a1 Prupe.6G163100_v2.0.a1 Prupe.6G163100_v2.0.a1
pyrus_communis	pycom15g30310
rosa_chinensis	RchiOBHm_Chr2g0119061 RchiOBHm_Chr2g0119121
rosa_laevigata	RLG00000018446
rosa_multiflora	Rmu_sc0001653.1_g000011
rosa_roxburghii	Rroxscaffold_2G00124500
rosa_rugosa	Rorug02G0220300 Rorug02G0220400
rosa_samantha	Rh2AG278400 Rh2BG289300
rosa_wichuraiana	Rw2G022100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	296, 705
AcsI	RAATTY	1 cut(s)	548
AfaI	GTAC	1 cut(s)	433
AgsI	TTSAA	5 cut(s)	506, 547, 568, 607, 718
AluBI	AGCT	5 cut(s)	38, 268, 278, 352, 648
AluI	AGCT	5 cut(s)	38, 268, 278, 352, 648
Alw21I	GWGCWC	1 cut(s)	270
Alw26I	GTCTC	2 cut(s)	91, 490
AlwI	GGATC	2 cut(s)	296, 705
Ama87I	CYCGRG	2 cut(s)	55, 722
ApeKI	GCWGC	1 cut(s)	35
ApoI	RAATTY	1 cut(s)	548
AspS9I	GGNCC	1 cut(s)	535
AsuC2I	CCSGG	1 cut(s)	560
AsuHPI	GGTGA	3 cut(s)	85, 358, 506
AvaI	CYCGRG	2 cut(s)	55, 722
AvaII	GGWCC	1 cut(s)	535
BanII	GRGCYC	1 cut(s)	270
BauI	CACGAG	1 cut(s)	42
BbsI	GAAGAC	1 cut(s)	464
Bbv12I	GWGCWC	1 cut(s)	270
BbvI	GCAGC	1 cut(s)	47
BccI	CCATC	1 cut(s)	34
BceAI	ACGGC	1 cut(s)	595
BciVI	GTATCC	1 cut(s)	756
BcnI	CCSGG	1 cut(s)	560
BcoDI	GTCTC	2 cut(s)	91, 490
BfaI	CTAG	1 cut(s)	778
BfuI	GTATCC	1 cut(s)	756
BglII	AGATCT	1 cut(s)	609
BisI	GCNGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	37
Bme1390I	CCNGG	1 cut(s)	560
Bme18I	GGWCC	1 cut(s)	535
BmeT110I	CYCGRG	2 cut(s)	55, 722
BmgT120I	GGNCC	1 cut(s)	535
BmiI	GGNNCC	1 cut(s)	381
BmrFI	CCNGG	1 cut(s)	560
BpiI	GAAGAC	1 cut(s)	464
BpmI	CTGGAG	1 cut(s)	408
Bpu10I	CCTNAGC	1 cut(s)	522
BpuMI	CCSGG	1 cut(s)	560
BsaJI	CCNNGG	2 cut(s)	559, 723
BsaWI	WCCGGW	1 cut(s)	376
Bse1I	ACTGG	4 cut(s)	96, 348, 391, 667
Bse3DI	GCAATG	1 cut(s)	516
BseDI	CCNNGG	2 cut(s)	559, 723
BseMI	GCAATG	1 cut(s)	516
BseMII	CTCAG	3 cut(s)	107, 157, 536
BseNI	ACTGG	4 cut(s)	96, 348, 391, 667
BseRI	GAGGAG	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	270
BsiHKCI	CYCGRG	2 cut(s)	55, 722
BsiSI	CCGG	2 cut(s)	377, 559
BslFI	GGGAC	2 cut(s)	354, 741
BsmAI	GTCTC	2 cut(s)	91, 490
BsmBI	CGTCTC	1 cut(s)	490
BsmFI	GGGAC	2 cut(s)	354, 741
BsoBI	CYCGRG	2 cut(s)	55, 722
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	7 cut(s)	288, 333, 402, 496, 609, 654, 697
BspCNI	CTCAG	3 cut(s)	108, 156, 535
BspLI	GGNNCC	1 cut(s)	381
BspPI	GGATC	2 cut(s)	296, 705
BspQI	GCTCTTC	1 cut(s)	258
BsrDI	GCAATG	1 cut(s)	516
BsrI	ACTGG	4 cut(s)	96, 348, 391, 667
BssECI	CCNNGG	2 cut(s)	559, 723
BssMI	GATC	7 cut(s)	288, 333, 402, 496, 609, 654, 697
BssSI	CACGAG	1 cut(s)	42
Bst2BI	CACGAG	1 cut(s)	42
Bst4CI	ACNGT	4 cut(s)	247, 431, 442, 535
Bst6I	CTCTTC	2 cut(s)	231, 258
BstDEI	CTNAG	3 cut(s)	116, 143, 522
BstKTI	GATC	7 cut(s)	291, 336, 405, 499, 612, 657, 700
BstMAI	GTCTC	2 cut(s)	91, 490
BstMBI	GATC	7 cut(s)	288, 333, 402, 496, 609, 654, 697
BstSCI	CCNGG	1 cut(s)	558
BstV1I	GCAGC	1 cut(s)	47
BstV2I	GAAGAC	1 cut(s)	464
BstX2I	RGATCY	2 cut(s)	609, 697
BstYI	RGATCY	2 cut(s)	609, 697
BsuI	GTATCC	1 cut(s)	756
BtsIMutI	CAGTG	1 cut(s)	438
Cfr13I	GGNCC	1 cut(s)	535
Csp6I	GTAC	1 cut(s)	432
CviAII	CATG	3 cut(s)	151, 539, 694
CviJI	RGCY	8 cut(s)	22, 38, 142, 268, 278, 352, 382, 648
CviKI_1	RGCY	8 cut(s)	22, 38, 142, 268, 278, 352, 382, 648
CviQI	GTAC	1 cut(s)	432
DdeI	CTNAG	3 cut(s)	116, 143, 522
DpnI	GATC	7 cut(s)	290, 335, 404, 498, 611, 656, 699
DpnII	GATC	7 cut(s)	288, 333, 402, 496, 609, 654, 697
Eam1104I	CTCTTC	2 cut(s)	231, 258
EarI	CTCTTC	2 cut(s)	231, 258
Ecl136II	GAGCTC	1 cut(s)	268
Eco24I	GRGCYC	1 cut(s)	270
Eco47I	GGWCC	1 cut(s)	535
Eco53kI	GAGCTC	1 cut(s)	268
Eco88I	CYCGRG	2 cut(s)	55, 722
EcoICRI	GAGCTC	1 cut(s)	268
EcoT38I	GRGCYC	1 cut(s)	270
Esp3I	CGTCTC	1 cut(s)	490
FaeI	CATG	3 cut(s)	154, 542, 697
FaiI	YATR	7 cut(s)	152, 255, 257, 540, 642, 680, 695
FaqI	GGGAC	2 cut(s)	354, 741
FatI	CATG	3 cut(s)	150, 538, 693
Fnu4HI	GCNGC	1 cut(s)	36
FriOI	GRGCYC	1 cut(s)	270
Fsp4HI	GCNGC	1 cut(s)	36
FspBI	CTAG	1 cut(s)	778
GluI	GCNGC	1 cut(s)	36
GsuI	CTGGAG	1 cut(s)	408
HapII	CCGG	2 cut(s)	377, 559
Hin1II	CATG	3 cut(s)	154, 542, 697
HindIII	AAGCTT	1 cut(s)	350
HinfI	GANTC	4 cut(s)	367, 568, 591, 711
HpaII	CCGG	2 cut(s)	377, 559
HphI	GGTGA	3 cut(s)	85, 358, 506
Hpy188I	TCNGA	6 cut(s)	146, 308, 319, 366, 372, 407
Hpy188III	TCNNGA	7 cut(s)	42, 55, 57, 160, 476, 607, 736
Hpy99I	CGWCG	2 cut(s)	581, 599
HpyAV	CCTTC	1 cut(s)	613
HpyCH4III	ACNGT	4 cut(s)	247, 431, 442, 535
HpyCH4IV	ACGT	1 cut(s)	72
HpyF3I	CTNAG	3 cut(s)	116, 143, 522
HpySE526I	ACGT	1 cut(s)	72
Hsp92II	CATG	3 cut(s)	154, 542, 697
Kzo9I	GATC	7 cut(s)	288, 333, 402, 496, 609, 654, 697
LguI	GCTCTTC	1 cut(s)	258
LmnI	GCTCC	2 cut(s)	47, 379
Lsp1109I	GCAGC	1 cut(s)	47
MaeI	CTAG	1 cut(s)	778
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	4 cut(s)	8, 125, 166, 773
MalI	GATC	7 cut(s)	290, 335, 404, 498, 611, 656, 699
MboI	GATC	7 cut(s)	288, 333, 402, 496, 609, 654, 697
MflI	RGATCY	2 cut(s)	609, 697
MhlI	GDGCHC	1 cut(s)	270
MluCI	AATT	3 cut(s)	464, 548, 756
MmeI	TCCRAC	3 cut(s)	297, 344, 395
MnlI	CCTC	6 cut(s)	38, 199, 290, 331, 401, 718
MseI	TTAA	3 cut(s)	312, 755, 759
MspI	CCGG	2 cut(s)	377, 559
MspR9I	CCNGG	1 cut(s)	560
NciI	CCSGG	1 cut(s)	560
NdeII	GATC	7 cut(s)	288, 333, 402, 496, 609, 654, 697
NlaIII	CATG	3 cut(s)	154, 542, 697
NlaIV	GGNNCC	1 cut(s)	381
NmuCI	GTSAC	2 cut(s)	125, 166
PacI	TTAATTAA	1 cut(s)	759
PaeR7I	CTCGAG	1 cut(s)	55
PciSI	GCTCTTC	1 cut(s)	258
PcsI	WCGNNNNNNNCGW	1 cut(s)	620
PfeI	GAWTC	4 cut(s)	367, 568, 591, 711
PkrI	GCNGC	1 cut(s)	37
Psp124BI	GAGCTC	1 cut(s)	270
PspN4I	GGNNCC	1 cut(s)	381
PspPI	GGNCC	1 cut(s)	535
PsuI	RGATCY	2 cut(s)	609, 697
RsaI	GTAC	1 cut(s)	433
RsaNI	GTAC	1 cut(s)	432
SacI	GAGCTC	1 cut(s)	270
SapI	GCTCTTC	1 cut(s)	258
SaqAI	TTAA	3 cut(s)	312, 755, 759
SatI	GCNGC	1 cut(s)	36
Sau3AI	GATC	7 cut(s)	288, 333, 402, 496, 609, 654, 697
Sau96I	GGNCC	1 cut(s)	535
ScrFI	CCNGG	1 cut(s)	560
SduI	GDGCHC	1 cut(s)	270
SetI	ASST	8 cut(s)	15, 40, 75, 270, 280, 354, 412, 650
Sfr274I	CTCGAG	1 cut(s)	55
SinI	GGWCC	1 cut(s)	535
SlaI	CTCGAG	1 cut(s)	55
SmlI	CTYRAG	1 cut(s)	55
SmoI	CTYRAG	1 cut(s)	55
Sse9I	AATT	3 cut(s)	464, 548, 756
SspMI	CTAG	1 cut(s)	778
SstI	GAGCTC	1 cut(s)	270
StyD4I	CCNGG	1 cut(s)	558
TaaI	ACNGT	4 cut(s)	247, 431, 442, 535
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	7 cut(s)	56, 336, 475, 552, 576, 623, 735
TasI	AATT	3 cut(s)	464, 548, 756
TatI	WGTACW	1 cut(s)	431
TfiI	GAWTC	4 cut(s)	367, 568, 591, 711
Tru1I	TTAA	3 cut(s)	312, 755, 759
Tru9I	TTAA	3 cut(s)	312, 755, 759
TscAI	CASTG	1 cut(s)	445
TseFI	GTSAC	2 cut(s)	125, 166
TseI	GCWGC	1 cut(s)	35
Tsp45I	GTSAC	2 cut(s)	125, 166
TspDTI	ATGAA	5 cut(s)	145, 213, 228, 657, 689
TspRI	CASTG	1 cut(s)	445
VpaK11BI	GGWCC	1 cut(s)	535
XapI	RAATTY	1 cut(s)	548
XhoI	CTCGAG	1 cut(s)	55
XspI	CTAG	1 cut(s)	778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.