Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005160

Physical Location & Seq

Genomic Coordinates Reverse (-)

31338908 .. 31340291

Gene Structure 1384 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49181

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGAAATCTGAGATTGAAGGTCTGGTTAAGCAGCTGGAGTCTCAGAATCCAACTCCAGATCCTACTGTGAATTTAGAAAAGGTGGGTGGCTGCTGGAAACTTGTGTATAGCACAATTACAAGTTTAGTCTCAAGAAGAACAAAGCTAGGGTTGAGGGACTTCATCTCATTGGGAGATTTCTACCAGAATATCGATATTGCTAAGGGCAAAGCAGTCAATGTGATCAAGTTCGATGTGAGAGGATTGAATCTCTTTAATGGACGACTAACAATTGTGGCCTCCTTCAAGAAAGCATCCAAATCATTGATGAACGTGTTTCGGAAAAATTATGACATTCTGCTTGGAATCTTCAATCCAGACGGTTGGCTTGAGATCACATATGTTGATGATACCATGAGGATAGGAAGGGATGACAAAGGCAATATCTTCGTCTTAGAGAGATCAGAAGAAAATTTAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010236 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

153

Amino Acids

17.35

Weight (kDa)

8.99

Isoelectric Point (pI)

33.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	2 - 103	8.4e-16	PAP_fibrillin
PAP_fibrillin	PF04755	120 - 145	9.8e-09	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09820 AT5G09820 AT5G09820
fragaria_vesca	FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570
malus_domestica	MD15G1343200.v1.1
prunus_persica	Prupe.6G163100_v2.0.a1 Prupe.6G163100_v2.0.a1 Prupe.6G163100_v2.0.a1 Prupe.6G163100_v2.0.a1
pyrus_communis	pycom15g30310
rosa_chinensis	RchiOBHm_Chr2g0119061 RchiOBHm_Chr2g0119121
rosa_laevigata	RLG00000018446
rosa_multiflora	Rmu_sc0001653.1_g000011
rosa_roxburghii	Rroxscaffold_2G00124500
rosa_rugosa	Rorug02G0220300 Rorug02G0220400
rosa_samantha	Rh2AG278400 Rh2BG289300
rosa_wichuraiana	Rw2G022100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	53
AcsI	RAATTY	2 cut(s)	70, 451
AflIII	ACRYGT	1 cut(s)	312
AgsI	TTSAA	4 cut(s)	17, 247, 286, 352
AluBI	AGCT	2 cut(s)	34, 145
AluI	AGCT	2 cut(s)	34, 145
Alw26I	GTCTC	2 cut(s)	45, 133
AlwI	GGATC	1 cut(s)	53
AoxI	GGCC	1 cut(s)	276
ApeKI	GCWGC	2 cut(s)	31, 90
ApoI	RAATTY	2 cut(s)	70, 451
BbvI	GCAGC	2 cut(s)	43, 77
BcgI	CGANNNNNNTGC	2 cut(s)	409, 443
BclI	TGATCA	1 cut(s)	222
BcoDI	GTCTC	2 cut(s)	45, 133
BfaI	CTAG	1 cut(s)	146
BisI	GCNGC	2 cut(s)	32, 91
BlsI	GCNGC	2 cut(s)	33, 92
BmsI	GCATC	1 cut(s)	302
BpmI	CTGGAG	2 cut(s)	39, 56
Bpu10I	CCTNAGC	1 cut(s)	201
BpuEI	CTTGAG	2 cut(s)	115, 389
Bsa29I	ATCGAT	1 cut(s)	192
BseCI	ATCGAT	1 cut(s)	192
BseGI	GGATG	2 cut(s)	293, 415
BseMII	CTCAG	1 cut(s)	56
BseXI	GCAGC	2 cut(s)	43, 77
BshFI	GGCC	1 cut(s)	278
BshVI	ATCGAT	1 cut(s)	192
BslFI	GGGAC	1 cut(s)	170
BsmAI	GTCTC	2 cut(s)	45, 133
BsmFI	GGGAC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	278
Bsp143I	GATC	4 cut(s)	58, 222, 372, 440
BspANI	GGCC	1 cut(s)	278
BspCNI	CTCAG	1 cut(s)	55
BspDI	ATCGAT	1 cut(s)	192
BspPI	GGATC	1 cut(s)	53
BssMI	GATC	4 cut(s)	58, 222, 372, 440
Bst4CI	ACNGT	2 cut(s)	67, 362
BstDEI	CTNAG	4 cut(s)	9, 42, 201, 433
BstF5I	GGATG	2 cut(s)	293, 415
BstKTI	GATC	4 cut(s)	61, 225, 375, 443
BstMAI	GTCTC	2 cut(s)	45, 133
BstMBI	GATC	4 cut(s)	58, 222, 372, 440
BstV1I	GCAGC	2 cut(s)	43, 77
BstX2I	RGATCY	1 cut(s)	58
BstXI	CCANNNNNNTGG	1 cut(s)	363
BstYI	RGATCY	1 cut(s)	58
Bsu15I	ATCGAT	1 cut(s)	192
BsuRI	GGCC	1 cut(s)	278
BsuTUI	ATCGAT	1 cut(s)	192
BtsCI	GGATG	2 cut(s)	293, 415
ClaI	ATCGAT	1 cut(s)	192
CviAII	CATG	1 cut(s)	394
CviJI	RGCY	5 cut(s)	34, 90, 145, 278, 367
CviKI_1	RGCY	5 cut(s)	34, 90, 145, 278, 367
DdeI	CTNAG	4 cut(s)	9, 42, 201, 433
DpnI	GATC	4 cut(s)	60, 224, 374, 442
DpnII	GATC	4 cut(s)	58, 222, 372, 440
FaeI	CATG	1 cut(s)	397
FaiI	YATR	5 cut(s)	108, 330, 379, 381, 395
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	1 cut(s)	393
FauNDI	CATATG	1 cut(s)	379
FbaI	TGATCA	1 cut(s)	222
Fnu4HI	GCNGC	2 cut(s)	32, 91
FokI	GGATG	2 cut(s)	280, 422
Fsp4HI	GCNGC	2 cut(s)	32, 91
FspBI	CTAG	1 cut(s)	146
GluI	GCNGC	2 cut(s)	32, 91
GsuI	CTGGAG	2 cut(s)	39, 56
HaeIII	GGCC	1 cut(s)	278
Hin1II	CATG	1 cut(s)	397
HinfI	GANTC	4 cut(s)	38, 46, 247, 345
Hpy188I	TCNGA	4 cut(s)	10, 45, 321, 445
Hpy188III	TCNNGA	4 cut(s)	56, 132, 286, 356
HpyAV	CCTTC	3 cut(s)	11, 292, 399
HpyCH4III	ACNGT	2 cut(s)	67, 362
HpyCH4IV	ACGT	1 cut(s)	312
HpyF3I	CTNAG	4 cut(s)	9, 42, 201, 433
HpySE526I	ACGT	1 cut(s)	312
Hsp92II	CATG	1 cut(s)	397
Ksp22I	TGATCA	1 cut(s)	222
Kzo9I	GATC	4 cut(s)	58, 222, 372, 440
LpnPI	CCDG	6 cut(s)	8, 20, 69, 79, 197, 369
Lsp1109I	GCAGC	2 cut(s)	43, 77
LweI	GCATC	1 cut(s)	302
MaeI	CTAG	1 cut(s)	146
MaeII	ACGT	1 cut(s)	312
MalI	GATC	4 cut(s)	60, 224, 374, 442
MboI	GATC	4 cut(s)	58, 222, 372, 440
MboII	GAAGA	4 cut(s)	147, 340, 418, 458
MfeI	CAATTG	1 cut(s)	270
MflI	RGATCY	1 cut(s)	58
MluCI	AATT	6 cut(s)	70, 114, 270, 325, 451, 456
MlyI	GAGTC	1 cut(s)	47
MmeI	TCCRAC	1 cut(s)	74
MnlI	CCTC	4 cut(s)	147, 233, 289, 390
MseI	TTAA	4 cut(s)	27, 255, 455, 460
MspA1I	CMGCKG	1 cut(s)	34
MunI	CAATTG	1 cut(s)	270
NdeI	CATATG	1 cut(s)	379
NdeII	GATC	4 cut(s)	58, 222, 372, 440
NlaIII	CATG	1 cut(s)	397
PfeI	GAWTC	3 cut(s)	46, 247, 345
PkrI	GCNGC	2 cut(s)	33, 92
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PsuI	RGATCY	1 cut(s)	58
PvuII	CAGCTG	1 cut(s)	34
SaqAI	TTAA	4 cut(s)	27, 255, 455, 460
SatI	GCNGC	2 cut(s)	32, 91
Sau3AI	GATC	4 cut(s)	58, 222, 372, 440
SchI	GAGTC	1 cut(s)	47
SetI	ASST	5 cut(s)	22, 36, 84, 147, 315
SfaNI	GCATC	1 cut(s)	302
SmlI	CTYRAG	2 cut(s)	130, 368
SmoI	CTYRAG	2 cut(s)	130, 368
Sse9I	AATT	6 cut(s)	70, 114, 270, 325, 451, 456
SspMI	CTAG	1 cut(s)	146
TaaI	ACNGT	2 cut(s)	67, 362
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	2 cut(s)	192, 231
TasI	AATT	6 cut(s)	70, 114, 270, 325, 451, 456
TfiI	GAWTC	3 cut(s)	46, 247, 345
Tru1I	TTAA	4 cut(s)	27, 255, 455, 460
Tru9I	TTAA	4 cut(s)	27, 255, 455, 460
TseI	GCWGC	2 cut(s)	31, 90
TspDTI	ATGAA	3 cut(s)	17, 151, 323
XapI	RAATTY	2 cut(s)	70, 451
XspI	CTAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.