Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005160

Physical Location & Seq

Genomic Coordinates Reverse (-)

15482242 .. 15484313

Gene Structure 2072 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G163100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGGCACCATGCTTGCCCAACCACCAATCCCAGCTTTCCATGCAATTCCACCAGTGCTTAGAAATAGACCCACAAACATGGCGGTAGCTCCTTATAGTTTTCTCTCAGCCACGCATCAATGGACTCAAAGCACGAGATTTGGGCAGTGCCCATTTGGGTTTAGGAACACTTACACAGTCAGAGTTGCAGAGCAAAGTTCGAGCCTTATTGGGGACGAGACACCCACTCAGATTAAGACTGAGCTTTACCAAGCACTCGAAGGAATCAATAGAGGGATTTTTGGGGTCCCATCTGCGAAGAAAGCTGAGATTGAAGCTCTTGTGAAGCAGCTGGAGTCTCAGAATCCTACTCCAGATCCTATTCTAAATTTGGAAAAGATGGGTGGATGCTGGAAACTTGTTTACAGCACAATTACAATTTTAGGCTCCAAAAGAACAAAGCTAGGATTGAGGGACTTCATCTCCTTGGGTGATTTCCTGCAGAATATTAATGTTGCTGAGGGCCAAGCAGTTAATGTGATCAAGTTCGATGTGAGAGGATTGAATCTGTTTAATGGACGGCTGACGATTGAGGCCTCCTTCAAGCAAGCATCCAAATCAAGAGTTGATATCAAGTATGACAACTCCACAATCACTCCGGTTCAGTTGATGAACGTGTTTCGGAAAAATTACCATCTTCTGCTCGGAATCTTCAATCCAGAGGGTTGGCTTGAGATTACATATCTTGATGAAACCATGAGGATCGGAAGGGATGATAAAGGCAACATCTTCATATTAGAGAGATCAAACGAAAATGCTCTTCAAGCGTCAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010236 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

272

Amino Acids

30.31

Weight (kDa)

9.02

Isoelectric Point (pI)

42.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09820 AT5G09820 AT5G09820
fragaria_vesca	FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570
malus_domestica	MD15G1343200.v1.1
prunus_persica	Prupe.6G163100_v2.0.a1 Prupe.6G163100_v2.0.a1 Prupe.6G163100_v2.0.a1 Prupe.6G163100_v2.0.a1
pyrus_communis	pycom15g30310
rosa_chinensis	RchiOBHm_Chr2g0119061 RchiOBHm_Chr2g0119121
rosa_laevigata	RLG00000018446
rosa_multiflora	Rmu_sc0001653.1_g000011
rosa_roxburghii	Rroxscaffold_2G00124500
rosa_rugosa	Rorug02G0220300 Rorug02G0220400
rosa_samantha	Rh2AG278400 Rh2BG289300
rosa_wichuraiana	Rw2G022100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	5
AciI	CCGC	1 cut(s)	83
AclWI	GGATC	2 cut(s)	350, 749
AcsI	RAATTY	1 cut(s)	367
AfiI	CCNNNNNNNGG	1 cut(s)	211
AflIII	ACRYGT	1 cut(s)	654
AgsI	TTSAA	5 cut(s)	314, 544, 583, 694, 803
AluBI	AGCT	8 cut(s)	35, 89, 244, 305, 317, 331, 442, 813
AluI	AGCT	8 cut(s)	35, 89, 244, 305, 317, 331, 442, 813
Alw26I	GTCTC	2 cut(s)	212, 342
AlwI	GGATC	2 cut(s)	350, 749
AoxI	GGCC	2 cut(s)	502, 573
ApeKI	GCWGC	1 cut(s)	328
ApoI	RAATTY	1 cut(s)	367
AseI	ATTAAT	1 cut(s)	489
AspS9I	GGNCC	2 cut(s)	286, 502
AsuHPI	GGTGA	1 cut(s)	482
AvaII	GGWCC	1 cut(s)	286
BaeGI	GKGCMC	2 cut(s)	8, 152
BanI	GGYRCC	1 cut(s)	5
BauI	CACGAG	1 cut(s)	133
BbvCI	CCTCAGC	1 cut(s)	498
BbvI	GCAGC	1 cut(s)	340
BccI	CCATC	3 cut(s)	298, 373, 681
BceAI	ACGGC	1 cut(s)	575
BclI	TGATCA	1 cut(s)	519
BcoDI	GTCTC	2 cut(s)	212, 342
BfaI	CTAG	2 cut(s)	443, 814
BfmI	CTRYAG	1 cut(s)	479
BisI	GCNGC	1 cut(s)	329
BlsI	GCNGC	1 cut(s)	330
Bme18I	GGWCC	1 cut(s)	286
BmgT120I	GGNCC	2 cut(s)	286, 502
BmiI	GGNNCC	4 cut(s)	7, 287, 288, 427
BmsI	GCATC	3 cut(s)	124, 377, 599
BpmI	CTGGAG	2 cut(s)	336, 353
Bpu10I	CCTNAGC	1 cut(s)	498
BpuEI	CTTGAG	1 cut(s)	731
BsaJI	CCNNGG	1 cut(s)	465
BsaWI	WCCGGW	1 cut(s)	637
BsaXI	ACNNNNNCTCC	4 cut(s)	446, 476, 619, 649
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse1I	ACTGG	1 cut(s)	53
BseDI	CCNNGG	1 cut(s)	465
BseGI	GGATG	3 cut(s)	392, 590, 757
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseMII	CTCAG	6 cut(s)	120, 231, 242, 297, 353, 489
BseNI	ACTGG	1 cut(s)	53
BseSI	GKGCMC	2 cut(s)	8, 152
BseXI	GCAGC	1 cut(s)	340
BseYI	CCCAGC	1 cut(s)	31
BshFI	GGCC	2 cut(s)	504, 575
BshNI	GGYRCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	638
BslFI	GGGAC	3 cut(s)	227, 272, 467
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmAI	GTCTC	2 cut(s)	212, 342
BsmFI	GGGAC	3 cut(s)	227, 272, 467
BsnI	GGCC	2 cut(s)	504, 575
Bsp1286I	GDGCHC	2 cut(s)	8, 152
Bsp143I	GATC	4 cut(s)	355, 519, 741, 782
BspACI	CCGC	1 cut(s)	83
BspANI	GGCC	2 cut(s)	504, 575
BspCNI	CTCAG	6 cut(s)	119, 232, 241, 298, 352, 490
BspLI	GGNNCC	4 cut(s)	7, 287, 288, 427
BspMAI	CTGCAG	1 cut(s)	483
BspPI	GGATC	2 cut(s)	350, 749
BspQI	GCTCTTC	1 cut(s)	804
BspT107I	GGYRCC	1 cut(s)	5
BsrI	ACTGG	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	465
BssMI	GATC	4 cut(s)	355, 519, 741, 782
BssSI	CACGAG	1 cut(s)	133
BssT1I	CCWWGG	1 cut(s)	465
Bst2BI	CACGAG	1 cut(s)	133
Bst4CI	ACNGT	1 cut(s)	178
Bst6I	CTCTTC	1 cut(s)	804
BstC8I	GCNNGC	2 cut(s)	15, 588
BstDEI	CTNAG	7 cut(s)	59, 106, 228, 240, 306, 339, 498
BstF5I	GGATG	3 cut(s)	392, 590, 757
BstKTI	GATC	4 cut(s)	358, 522, 744, 785
BstMAI	GTCTC	2 cut(s)	212, 342
BstMBI	GATC	4 cut(s)	355, 519, 741, 782
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 302, 803
BstSFI	CTRYAG	1 cut(s)	479
BstSLI	GKGCMC	2 cut(s)	8, 152
BstV1I	GCAGC	1 cut(s)	340
BstX2I	RGATCY	1 cut(s)	355
BstXI	CCANNNNNNTGG	2 cut(s)	79, 705
BstYI	RGATCY	1 cut(s)	355
BsuRI	GGCC	2 cut(s)	504, 575
BtsCI	GGATG	3 cut(s)	392, 590, 757
BtsI	GCAGTG	1 cut(s)	152
BtsIMutI	CAGTG	2 cut(s)	60, 152
Cac8I	GCNNGC	2 cut(s)	15, 588
Cfr13I	GGNCC	2 cut(s)	286, 502
CseI	GACGC	1 cut(s)	795
CviAII	CATG	4 cut(s)	10, 41, 79, 736
DdeI	CTNAG	7 cut(s)	59, 106, 228, 240, 306, 339, 498
DpnI	GATC	4 cut(s)	357, 521, 743, 784
DpnII	GATC	4 cut(s)	355, 519, 741, 782
Eam1104I	CTCTTC	1 cut(s)	804
EarI	CTCTTC	1 cut(s)	804
Eco130I	CCWWGG	1 cut(s)	465
Eco147I	AGGCCT	1 cut(s)	575
Eco32I	GATATC	1 cut(s)	610
Eco47I	GGWCC	1 cut(s)	286
EcoO109I	RGGNCCY	1 cut(s)	286
EcoRV	GATATC	1 cut(s)	610
EcoT14I	CCWWGG	1 cut(s)	465
ErhI	CCWWGG	1 cut(s)	465
FaeI	CATG	4 cut(s)	13, 44, 82, 739
FaiI	YATR	8 cut(s)	11, 42, 80, 96, 618, 721, 737, 773
FaqI	GGGAC	3 cut(s)	227, 272, 467
FatI	CATG	4 cut(s)	9, 40, 78, 735
FbaI	TGATCA	1 cut(s)	519
Fnu4HI	GCNGC	1 cut(s)	329
FokI	GGATG	3 cut(s)	399, 577, 764
Fsp4HI	GCNGC	1 cut(s)	329
FspBI	CTAG	2 cut(s)	443, 814
GluI	GCNGC	1 cut(s)	329
GsaI	CCCAGC	1 cut(s)	35
GsuI	CTGGAG	2 cut(s)	336, 353
HaeIII	GGCC	2 cut(s)	504, 575
HapII	CCGG	1 cut(s)	638
HgaI	GACGC	1 cut(s)	795
Hin1II	CATG	4 cut(s)	13, 44, 82, 739
HinfI	GANTC	6 cut(s)	124, 264, 335, 343, 544, 687
HpaII	CCGG	1 cut(s)	638
HphI	GGTGA	1 cut(s)	482
Hpy166II	GTNNAC	1 cut(s)	403
Hpy188I	TCNGA	6 cut(s)	182, 231, 342, 663, 686, 746
Hpy188III	TCNNGA	4 cut(s)	353, 600, 698, 725
Hpy8I	GTNNAC	1 cut(s)	403
HpyAV	CCTTC	3 cut(s)	254, 589, 741
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4IV	ACGT	1 cut(s)	654
HpyCH4V	TGCA	3 cut(s)	44, 188, 481
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 302, 803
HpyF3I	CTNAG	7 cut(s)	59, 106, 228, 240, 306, 339, 498
HpySE526I	ACGT	1 cut(s)	654
Hsp92II	CATG	4 cut(s)	13, 44, 82, 739
KflI	GGGWCCC	1 cut(s)	286
Ksp22I	TGATCA	1 cut(s)	519
Kzo9I	GATC	4 cut(s)	355, 519, 741, 782
LguI	GCTCTTC	1 cut(s)	804
LmnI	GCTCC	2 cut(s)	94, 431
LpnPI	CCDG	8 cut(s)	45, 66, 317, 366, 376, 491, 651, 711
Lsp1109I	GCAGC	1 cut(s)	340
LweI	GCATC	3 cut(s)	124, 377, 599
MaeI	CTAG	2 cut(s)	443, 814
MaeII	ACGT	1 cut(s)	654
MalI	GATC	4 cut(s)	357, 521, 743, 784
MboI	GATC	4 cut(s)	355, 519, 741, 782
MboII	GAAGA	5 cut(s)	310, 668, 682, 760, 791
MflI	RGATCY	1 cut(s)	355
MhlI	GDGCHC	2 cut(s)	8, 152
MluCI	AATT	5 cut(s)	45, 367, 411, 417, 667
MlyI	GAGTC	2 cut(s)	118, 344
MnlI	CCTC	8 cut(s)	266, 444, 493, 530, 565, 586, 694, 732
MseI	TTAA	4 cut(s)	234, 489, 513, 552
MslI	CAYNNNNRTG	1 cut(s)	77
MspA1I	CMGCKG	1 cut(s)	331
MspI	CCGG	1 cut(s)	638
MwoI	GCNNNNNNNGC	3 cut(s)	41, 302, 803
NdeII	GATC	4 cut(s)	355, 519, 741, 782
NlaIII	CATG	4 cut(s)	13, 44, 82, 739
NlaIV	GGNNCC	4 cut(s)	7, 287, 288, 427
PceI	AGGCCT	1 cut(s)	575
PciSI	GCTCTTC	1 cut(s)	804
PfeI	GAWTC	4 cut(s)	264, 343, 544, 687
PkrI	GCNGC	1 cut(s)	330
PleI	GAGTC	2 cut(s)	118, 343
PpsI	GAGTC	2 cut(s)	118, 343
PpuMI	RGGWCCY	1 cut(s)	286
PshBI	ATTAAT	1 cut(s)	489
Psp5II	RGGWCCY	1 cut(s)	286
PspFI	CCCAGC	1 cut(s)	31
PspN4I	GGNNCC	4 cut(s)	7, 287, 288, 427
PspPI	GGNCC	2 cut(s)	286, 502
PspPPI	RGGWCCY	1 cut(s)	286
PstI	CTGCAG	1 cut(s)	483
PsuI	RGATCY	1 cut(s)	355
PvuII	CAGCTG	1 cut(s)	331
RseI	CAYNNNNRTG	1 cut(s)	77
SapI	GCTCTTC	1 cut(s)	804
SaqAI	TTAA	4 cut(s)	234, 489, 513, 552
SatI	GCNGC	1 cut(s)	329
Sau3AI	GATC	4 cut(s)	355, 519, 741, 782
Sau96I	GGNCC	2 cut(s)	286, 502
SchI	GAGTC	2 cut(s)	118, 344
SduI	GDGCHC	2 cut(s)	8, 152
SetI	ASST	9 cut(s)	37, 91, 246, 307, 319, 333, 444, 657, 815
SfaNI	GCATC	3 cut(s)	124, 377, 599
SfcI	CTRYAG	1 cut(s)	479
SinI	GGWCC	1 cut(s)	286
SmiMI	CAYNNNNRTG	1 cut(s)	77
SmlI	CTYRAG	1 cut(s)	710
SmoI	CTYRAG	1 cut(s)	710
Sse9I	AATT	5 cut(s)	45, 367, 411, 417, 667
SseBI	AGGCCT	1 cut(s)	575
SsiI	CCGC	1 cut(s)	83
SspI	AATATT	1 cut(s)	487
SspMI	CTAG	2 cut(s)	443, 814
StuI	AGGCCT	1 cut(s)	575
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	1 cut(s)	178
TaiI	ACGT	1 cut(s)	657
TaqI	TCGA	3 cut(s)	200, 258, 528
TasI	AATT	5 cut(s)	45, 367, 411, 417, 667
TfiI	GAWTC	4 cut(s)	264, 343, 544, 687
Tru1I	TTAA	4 cut(s)	234, 489, 513, 552
Tru9I	TTAA	4 cut(s)	234, 489, 513, 552
TscAI	CASTG	2 cut(s)	60, 152
TseI	GCWGC	1 cut(s)	328
TspDTI	ATGAA	4 cut(s)	448, 665, 744, 760
TspRI	CASTG	2 cut(s)	60, 152
VpaK11BI	GGWCC	1 cut(s)	286
VspI	ATTAAT	1 cut(s)	489
XapI	RAATTY	1 cut(s)	367
XspI	CTAG	2 cut(s)	443, 814

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.