Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001653.1

Orthogroup ID

OG0005160

Physical Location & Seq

Genomic Coordinates Forward (+)

48125 .. 49796

Gene Structure 1672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001653.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

atgcttgtccaaccaccaatcccggctttccatgctaacattcctccaatgctcagaaccacaaacatggtgataactcccacttcaccctcaaccactcatcaaaagactcaaagcttaagatttggtgactacccacctgggtttaggcccatttacagagtcaaagttgcagaacaaacctctggcctagttggggatgagacacccacccagattaaaactgagcttcaccaggcactccaaggtattaatagagggatatttggagtcccatctgcaaagaaatctgagattgaaggtctggttaagcagctggagtcaaagaatccaactccagatcctactgtgaatttagaaaaggtgggtggctgctggaaacttgtgtatagcacaataacaattttaggctcaagaagaacaaagctaggattgagggacttcatctcattgggagatttctaccagaatattgatattgctaagggcaaagcagtcaatgtgatcaagttcgatgtgagaggattggatctctttaatggacggctaacaattgtggcctccttcaagaaagcatccaaatcaagagttgacatcagctatgaaaactctacaatcactccagttcagttgatgaacgtgtttcggaaaaattatgatattctgcttggaatcttcaatccagatggttggctcgagatcacatacgttgatgataccttgaggataggaagggatgacaaaggcaatatcttcatattagagagagcagaagaaaattttatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010236 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

262

Amino Acids

29.32

Weight (kDa)

9.32

Isoelectric Point (pI)

35.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09820 AT5G09820 AT5G09820
fragaria_vesca	FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570
malus_domestica	MD15G1343200.v1.1
prunus_persica	Prupe.6G163100_v2.0.a1 Prupe.6G163100_v2.0.a1 Prupe.6G163100_v2.0.a1 Prupe.6G163100_v2.0.a1
pyrus_communis	pycom15g30310
rosa_chinensis	RchiOBHm_Chr2g0119061 RchiOBHm_Chr2g0119121
rosa_laevigata	RLG00000018446
rosa_multiflora	Rmu_sc0001653.1_g000011
rosa_roxburghii	Rroxscaffold_2G00124500
rosa_rugosa	Rorug02G0220300 Rorug02G0220400
rosa_samantha	Rh2AG278400 Rh2BG289300
rosa_wichuraiana	Rw2G022100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	335, 537
AcsI	RAATTY	2 cut(s)	352, 778
AfiI	CCNNNNNNNGG	1 cut(s)	196
AflII	CTTAAG	1 cut(s)	118
AflIII	ACRYGT	1 cut(s)	639
AgsI	TTSAA	3 cut(s)	299, 568, 679
AjnI	CCWGG	2 cut(s)	139, 234
AluBI	AGCT	5 cut(s)	117, 229, 316, 427, 600
AluI	AGCT	5 cut(s)	117, 229, 316, 427, 600
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	2 cut(s)	335, 537
Ama87I	CYCGRG	1 cut(s)	695
AoxI	GGCC	3 cut(s)	149, 187, 558
ApeKI	GCWGC	2 cut(s)	313, 372
ApoI	RAATTY	2 cut(s)	352, 778
AseI	ATTAAT	1 cut(s)	252
AspS9I	GGNCC	1 cut(s)	150
AsuC2I	CCSGG	1 cut(s)	23
AsuHPI	GGTGA	4 cut(s)	78, 82, 140, 224
AvaI	CYCGRG	1 cut(s)	695
BbvI	GCAGC	2 cut(s)	325, 359
BccI	CCATC	2 cut(s)	283, 680
BceAI	ACGGC	1 cut(s)	560
BciT130I	CCWGG	2 cut(s)	141, 236
BclI	TGATCA	1 cut(s)	504
BcnI	CCSGG	1 cut(s)	23
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	2 cut(s)	191, 428
BfrI	CTTAAG	1 cut(s)	118
BisI	GCNGC	2 cut(s)	314, 373
BlsI	GCNGC	2 cut(s)	315, 374
Bme1390I	CCNGG	3 cut(s)	23, 141, 236
BmeT110I	CYCGRG	1 cut(s)	695
BmgT120I	GGNCC	1 cut(s)	150
BmrFI	CCNGG	3 cut(s)	23, 141, 236
BmsI	GCATC	1 cut(s)	584
BpmI	CTGGAG	3 cut(s)	321, 338, 606
Bpu10I	CCTNAGC	1 cut(s)	483
BpuEI	CTTGAG	2 cut(s)	397, 742
BpuMI	CCSGG	1 cut(s)	23
BsaJI	CCNNGG	2 cut(s)	140, 244
BsaXI	ACNNNNNCTCC	2 cut(s)	604, 634
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
Bse1I	ACTGG	1 cut(s)	623
BseBI	CCWGG	2 cut(s)	141, 236
BseDI	CCNNGG	2 cut(s)	140, 244
BseGI	GGATG	3 cut(s)	205, 575, 742
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseMII	CTCAG	3 cut(s)	67, 216, 282
BseNI	ACTGG	1 cut(s)	623
BseXI	GCAGC	2 cut(s)	325, 359
BshFI	GGCC	3 cut(s)	151, 189, 560
BsiHKCI	CYCGRG	1 cut(s)	695
BsiSI	CCGG	1 cut(s)	23
BslFI	GGGAC	2 cut(s)	257, 452
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmAI	GTCTC	1 cut(s)	197
BsmFI	GGGAC	2 cut(s)	257, 452
BsnI	GGCC	3 cut(s)	151, 189, 560
BsoBI	CYCGRG	1 cut(s)	695
Bsp143I	GATC	4 cut(s)	340, 504, 529, 699
BspANI	GGCC	3 cut(s)	151, 189, 560
BspCNI	CTCAG	3 cut(s)	66, 217, 283
BspPI	GGATC	2 cut(s)	335, 537
BspTI	CTTAAG	1 cut(s)	118
BsrI	ACTGG	1 cut(s)	623
BssECI	CCNNGG	2 cut(s)	140, 244
BssMI	GATC	4 cut(s)	340, 504, 529, 699
BssT1I	CCWWGG	1 cut(s)	244
Bst2UI	CCWGG	2 cut(s)	141, 236
Bst4CI	ACNGT	1 cut(s)	349
BstAFI	CTTAAG	1 cut(s)	118
BstDEI	CTNAG	4 cut(s)	53, 225, 291, 483
BstF5I	GGATG	3 cut(s)	205, 575, 742
BstKTI	GATC	4 cut(s)	343, 507, 532, 702
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	4 cut(s)	340, 504, 529, 699
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstNI	CCWGG	2 cut(s)	141, 236
BstSCI	CCNGG	3 cut(s)	21, 139, 234
BstV1I	GCAGC	2 cut(s)	325, 359
BstX2I	RGATCY	2 cut(s)	340, 529
BstXI	CCANNNNNNTGG	2 cut(s)	67, 690
BstYI	RGATCY	2 cut(s)	340, 529
BsuRI	GGCC	3 cut(s)	151, 189, 560
BtsCI	GGATG	3 cut(s)	205, 575, 742
Cfr13I	GGNCC	1 cut(s)	150
CviAII	CATG	2 cut(s)	32, 67
DdeI	CTNAG	4 cut(s)	53, 225, 291, 483
DpnI	GATC	4 cut(s)	342, 506, 531, 701
DpnII	GATC	4 cut(s)	340, 504, 529, 699
Eco130I	CCWWGG	1 cut(s)	244
Eco88I	CYCGRG	1 cut(s)	695
EcoRII	CCWGG	2 cut(s)	139, 234
EcoT14I	CCWWGG	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	244
FaeI	CATG	2 cut(s)	35, 70
FaiI	YATR	7 cut(s)	33, 68, 390, 603, 657, 706, 758
FaqI	GGGAC	2 cut(s)	257, 452
FatI	CATG	2 cut(s)	31, 66
FbaI	TGATCA	1 cut(s)	504
Fnu4HI	GCNGC	2 cut(s)	314, 373
FokI	GGATG	3 cut(s)	212, 562, 749
Fsp4HI	GCNGC	2 cut(s)	314, 373
FspBI	CTAG	2 cut(s)	191, 428
GluI	GCNGC	2 cut(s)	314, 373
GsuI	CTGGAG	3 cut(s)	321, 338, 606
HaeIII	GGCC	3 cut(s)	151, 189, 560
HapII	CCGG	1 cut(s)	23
Hin1II	CATG	2 cut(s)	35, 70
HincII	GTYRAC	1 cut(s)	592
HindII	GTYRAC	1 cut(s)	592
HindIII	AAGCTT	1 cut(s)	115
HinfI	GANTC	6 cut(s)	109, 162, 270, 320, 328, 672
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	4 cut(s)	78, 82, 140, 224
Hpy166II	GTNNAC	1 cut(s)	592
Hpy188I	TCNGA	3 cut(s)	56, 292, 648
Hpy188III	TCNNGA	6 cut(s)	338, 414, 568, 585, 683, 697
Hpy8I	GTNNAC	1 cut(s)	592
HpyAV	CCTTC	3 cut(s)	293, 574, 726
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4IV	ACGT	2 cut(s)	639, 708
HpyCH4V	TGCA	2 cut(s)	173, 281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpyF3I	CTNAG	4 cut(s)	53, 225, 291, 483
HpySE526I	ACGT	2 cut(s)	639, 708
Hsp92II	CATG	2 cut(s)	35, 70
Ksp22I	TGATCA	1 cut(s)	504
Kzo9I	GATC	4 cut(s)	340, 504, 529, 699
Lsp1109I	GCAGC	2 cut(s)	325, 359
LweI	GCATC	1 cut(s)	584
MaeI	CTAG	2 cut(s)	191, 428
MaeII	ACGT	2 cut(s)	639, 708
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	4 cut(s)	342, 506, 531, 701
MboI	GATC	4 cut(s)	340, 504, 529, 699
MboII	GAAGA	4 cut(s)	429, 667, 745, 785
MfeI	CAATTG	1 cut(s)	552
MflI	RGATCY	2 cut(s)	340, 529
MluCI	AATT	5 cut(s)	352, 402, 552, 652, 778
MlyI	GAGTC	4 cut(s)	103, 171, 279, 329
MmeI	TCCRAC	2 cut(s)	34, 356
MnlI	CCTC	8 cut(s)	54, 100, 193, 251, 429, 515, 571, 717
MseI	TTAA	6 cut(s)	119, 219, 252, 309, 537, 787
MslI	CAYNNNNRTG	1 cut(s)	65
MspA1I	CMGCKG	1 cut(s)	316
MspCI	CTTAAG	1 cut(s)	118
MspI	CCGG	1 cut(s)	23
MspR9I	CCNGG	3 cut(s)	23, 141, 236
MunI	CAATTG	1 cut(s)	552
MvaI	CCWGG	2 cut(s)	141, 236
MwoI	GCNNNNNNNGC	1 cut(s)	32
NciI	CCSGG	1 cut(s)	23
NdeII	GATC	4 cut(s)	340, 504, 529, 699
NlaIII	CATG	2 cut(s)	35, 70
NmuCI	GTSAC	1 cut(s)	128
PaeR7I	CTCGAG	1 cut(s)	695
PfeI	GAWTC	2 cut(s)	328, 672
PkrI	GCNGC	2 cut(s)	315, 374
PleI	GAGTC	4 cut(s)	103, 170, 278, 328
PpsI	GAGTC	4 cut(s)	103, 170, 278, 328
PshBI	ATTAAT	1 cut(s)	252
Psp6I	CCWGG	2 cut(s)	139, 234
PspGI	CCWGG	2 cut(s)	139, 234
PspPI	GGNCC	1 cut(s)	150
PsuI	RGATCY	2 cut(s)	340, 529
PvuII	CAGCTG	1 cut(s)	316
RseI	CAYNNNNRTG	1 cut(s)	65
SaqAI	TTAA	6 cut(s)	119, 219, 252, 309, 537, 787
SatI	GCNGC	2 cut(s)	314, 373
Sau3AI	GATC	4 cut(s)	340, 504, 529, 699
Sau96I	GGNCC	1 cut(s)	150
SchI	GAGTC	4 cut(s)	103, 171, 279, 329
ScrFI	CCNGG	3 cut(s)	23, 141, 236
SfaNI	GCATC	1 cut(s)	584
Sfr274I	CTCGAG	1 cut(s)	695
SlaI	CTCGAG	1 cut(s)	695
SmiMI	CAYNNNNRTG	1 cut(s)	65
SmlI	CTYRAG	4 cut(s)	118, 412, 695, 721
SmoI	CTYRAG	4 cut(s)	118, 412, 695, 721
Sse9I	AATT	5 cut(s)	352, 402, 552, 652, 778
SspI	AATATT	1 cut(s)	472
SspMI	CTAG	2 cut(s)	191, 428
StyD4I	CCNGG	3 cut(s)	21, 139, 234
StyI	CCWWGG	1 cut(s)	244
TaaI	ACNGT	1 cut(s)	349
TaiI	ACGT	2 cut(s)	642, 711
TaqI	TCGA	2 cut(s)	513, 696
TasI	AATT	5 cut(s)	352, 402, 552, 652, 778
TfiI	GAWTC	2 cut(s)	328, 672
Tru1I	TTAA	6 cut(s)	119, 219, 252, 309, 537, 787
Tru9I	TTAA	6 cut(s)	119, 219, 252, 309, 537, 787
TseFI	GTSAC	1 cut(s)	128
TseI	GCWGC	2 cut(s)	313, 372
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	4 cut(s)	433, 618, 650, 745
Vha464I	CTTAAG	1 cut(s)	118
VspI	ATTAAT	1 cut(s)	252
XapI	RAATTY	2 cut(s)	352, 778
XhoI	CTCGAG	1 cut(s)	695
XspI	CTAG	2 cut(s)	191, 428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.