Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0005160

Physical Location & Seq

Genomic Coordinates Reverse (-)

15413565 .. 15416023

Gene Structure 2459 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g23570.t8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGCTTGTCCAACCACCAATCCCAACTTTCCATACTAACATTCTTCCATTGCTCAGAACCACAAACATGGTGATAACTCACACTTCACCCTCAACCACTCACCAAAAGACACAAAGCTCAAGACTTGGCGAGTGCCCACCTGGGTTCAGACCCATTCACAGAGTCAGAGTCAGAGTTGCAGAGCAAACCTCTGGCCTTGTTGGGGATGAGACACCCACCCAGATTAAAACTGAGCTTTACCAGGCACTCCAAGGTATTAATAGAGGGATATTTGGAGTCCCATCTGCAAAGAAATCTGAGATTGAAGGTTTGGTTGAGCAGTTGGAGTCTCAGAATCCAACTCCAGATCCTACTGTGAACTTAGAAAAGGTGGGTGGATGCTGGAAACTTGTGTATAGCACAATTACAATTTTAGGCTCAAGAAGAACAAAGCTAGGATTGAGGGACTTCATCTCATTGGGAGATTTCTACCAAAATATTGATGTTGCTAAGGGCAAAGCAGTCAATGTGATCGAGTTCAATGTGAGAGGATTGAATCTGTTTAATGGACGGTTAACAATTGTGGCTTCCTTCAAGAAAGCATCCAAATCAAGAGTTGACATCAGCTATGACAACTCTACAATCACTCCAGTTCAGTTGATGAACGTGTTTCGGAAAAATTATGATATTCTGCTTGGAATTTTCAATCCAGACGGTTGGCTCGAGATCACATATGTTGATGATACCGTGAGGATAGGAAGGGATGACAAAGGCAATATCTTCATATTAGAGAGATCAGAAGAAATTATGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010236 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

265

Amino Acids

29.56

Weight (kDa)

9.03

Isoelectric Point (pI)

45.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	74 - 218	3.2e-24	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09820 AT5G09820 AT5G09820
fragaria_vesca	FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570
malus_domestica	MD15G1343200.v1.1
prunus_persica	Prupe.6G163100_v2.0.a1 Prupe.6G163100_v2.0.a1 Prupe.6G163100_v2.0.a1 Prupe.6G163100_v2.0.a1
pyrus_communis	pycom15g30310
rosa_chinensis	RchiOBHm_Chr2g0119061 RchiOBHm_Chr2g0119121
rosa_laevigata	RLG00000018446
rosa_multiflora	Rmu_sc0001653.1_g000011
rosa_roxburghii	Rroxscaffold_2G00124500
rosa_rugosa	Rorug02G0220300 Rorug02G0220400
rosa_samantha	Rh2AG278400 Rh2BG289300
rosa_wichuraiana	Rw2G022100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	341
AcsI	RAATTY	1 cut(s)	678
AfiI	CCNNNNNNNGG	1 cut(s)	202
AflIII	ACRYGT	1 cut(s)	645
AgsI	TTSAA	5 cut(s)	305, 520, 535, 574, 685
AjnI	CCWGG	2 cut(s)	139, 240
AluBI	AGCT	4 cut(s)	117, 235, 433, 606
AluI	AGCT	4 cut(s)	117, 235, 433, 606
Alw26I	GTCTC	2 cut(s)	203, 333
AlwI	GGATC	1 cut(s)	341
Ama87I	CYCGRG	1 cut(s)	701
AoxI	GGCC	1 cut(s)	193
ApoI	RAATTY	1 cut(s)	678
AseI	ATTAAT	1 cut(s)	258
AsuHPI	GGTGA	3 cut(s)	78, 82, 92
AvaI	CYCGRG	1 cut(s)	701
BaeGI	GKGCMC	1 cut(s)	137
BccI	CCATC	1 cut(s)	289
BciT130I	CCWGG	2 cut(s)	141, 242
BcoDI	GTCTC	2 cut(s)	203, 333
BfaI	CTAG	1 cut(s)	434
Bme1390I	CCNGG	2 cut(s)	141, 242
BmeT110I	CYCGRG	1 cut(s)	701
BmrFI	CCNGG	2 cut(s)	141, 242
BmsI	GCATC	2 cut(s)	368, 590
BplI	GAGNNNNNCTC	2 cut(s)	173, 205
BpmI	CTGGAG	2 cut(s)	327, 612
Bpu10I	CCTNAGC	1 cut(s)	489
BpuEI	CTTGAG	2 cut(s)	103, 403
BsaJI	CCNNGG	2 cut(s)	140, 250
BsaXI	ACNNNNNCTCC	2 cut(s)	610, 640
Bsc4I	CCNNNNNNNGG	1 cut(s)	202
Bse1I	ACTGG	1 cut(s)	629
Bse3DI	GCAATG	1 cut(s)	47
BseBI	CCWGG	2 cut(s)	141, 242
BseDI	CCNNGG	2 cut(s)	140, 250
BseGI	GGATG	4 cut(s)	211, 383, 581, 748
BseLI	CCNNNNNNNGG	1 cut(s)	202
BseMI	GCAATG	1 cut(s)	47
BseMII	CTCAG	4 cut(s)	67, 222, 288, 344
BseNI	ACTGG	1 cut(s)	629
BseSI	GKGCMC	1 cut(s)	137
BshFI	GGCC	1 cut(s)	195
BsiHKCI	CYCGRG	1 cut(s)	701
BslFI	GGGAC	2 cut(s)	263, 458
BslI	CCNNNNNNNGG	1 cut(s)	202
BsmAI	GTCTC	2 cut(s)	203, 333
BsmFI	GGGAC	2 cut(s)	263, 458
BsnI	GGCC	1 cut(s)	195
BsoBI	CYCGRG	1 cut(s)	701
Bsp1286I	GDGCHC	1 cut(s)	137
Bsp143I	GATC	4 cut(s)	346, 510, 705, 773
BspANI	GGCC	1 cut(s)	195
BspCNI	CTCAG	4 cut(s)	66, 223, 289, 343
BspPI	GGATC	1 cut(s)	341
BsrDI	GCAATG	1 cut(s)	47
BsrI	ACTGG	1 cut(s)	629
BssECI	CCNNGG	2 cut(s)	140, 250
BssMI	GATC	4 cut(s)	346, 510, 705, 773
BssT1I	CCWWGG	1 cut(s)	250
Bst2UI	CCWGG	2 cut(s)	141, 242
Bst4CI	ACNGT	4 cut(s)	355, 552, 695, 727
BstDEI	CTNAG	6 cut(s)	53, 231, 297, 330, 361, 489
BstF5I	GGATG	4 cut(s)	211, 383, 581, 748
BstKTI	GATC	4 cut(s)	349, 513, 708, 776
BstMAI	GTCTC	2 cut(s)	203, 333
BstMBI	GATC	4 cut(s)	346, 510, 705, 773
BstNI	CCWGG	2 cut(s)	141, 242
BstSCI	CCNGG	2 cut(s)	139, 240
BstSLI	GKGCMC	1 cut(s)	137
BstX2I	RGATCY	1 cut(s)	346
BstXI	CCANNNNNNTGG	2 cut(s)	67, 696
BstYI	RGATCY	1 cut(s)	346
BsuRI	GGCC	1 cut(s)	195
BtsCI	GGATG	4 cut(s)	211, 383, 581, 748
CviAII	CATG	1 cut(s)	67
CviJI	RGCY	8 cut(s)	117, 195, 235, 417, 433, 566, 606, 700
CviKI_1	RGCY	8 cut(s)	117, 195, 235, 417, 433, 566, 606, 700
DdeI	CTNAG	6 cut(s)	53, 231, 297, 330, 361, 489
DpnI	GATC	4 cut(s)	348, 512, 707, 775
DpnII	GATC	4 cut(s)	346, 510, 705, 773
Eco130I	CCWWGG	1 cut(s)	250
Eco88I	CYCGRG	1 cut(s)	701
EcoRII	CCWGG	2 cut(s)	139, 240
EcoT14I	CCWWGG	1 cut(s)	250
ErhI	CCWWGG	1 cut(s)	250
FaeI	CATG	1 cut(s)	70
FaiI	YATR	9 cut(s)	33, 68, 396, 609, 663, 712, 714, 764, 788
FaqI	GGGAC	2 cut(s)	263, 458
FatI	CATG	1 cut(s)	66
FauNDI	CATATG	1 cut(s)	712
FokI	GGATG	4 cut(s)	218, 390, 568, 755
FspBI	CTAG	1 cut(s)	434
GsuI	CTGGAG	2 cut(s)	327, 612
HaeIII	GGCC	1 cut(s)	195
Hin1II	CATG	1 cut(s)	70
HincII	GTYRAC	2 cut(s)	555, 598
HindII	GTYRAC	2 cut(s)	555, 598
HinfI	GANTC	6 cut(s)	162, 168, 276, 326, 334, 535
HpaI	GTTAAC	1 cut(s)	555
HphI	GGTGA	3 cut(s)	78, 82, 92
Hpy166II	GTNNAC	3 cut(s)	358, 555, 598
Hpy188I	TCNGA	8 cut(s)	56, 149, 167, 173, 298, 333, 654, 778
Hpy188III	TCNNGA	7 cut(s)	120, 344, 420, 574, 591, 689, 703
Hpy8I	GTNNAC	3 cut(s)	358, 555, 598
HpyAV	CCTTC	3 cut(s)	299, 580, 732
HpyCH4III	ACNGT	4 cut(s)	355, 552, 695, 727
HpyCH4IV	ACGT	1 cut(s)	645
HpyCH4V	TGCA	2 cut(s)	179, 287
HpyF3I	CTNAG	6 cut(s)	53, 231, 297, 330, 361, 489
HpySE526I	ACGT	1 cut(s)	645
Hsp92II	CATG	1 cut(s)	70
KspAI	GTTAAC	1 cut(s)	555
Kzo9I	GATC	4 cut(s)	346, 510, 705, 773
LweI	GCATC	2 cut(s)	368, 590
MaeI	CTAG	1 cut(s)	434
MaeII	ACGT	1 cut(s)	645
MalI	GATC	4 cut(s)	348, 512, 707, 775
MboI	GATC	4 cut(s)	346, 510, 705, 773
MboII	GAAGA	4 cut(s)	35, 435, 751, 791
MfeI	CAATTG	1 cut(s)	558
MflI	RGATCY	1 cut(s)	346
MhlI	GDGCHC	1 cut(s)	137
MluCI	AATT	6 cut(s)	402, 408, 558, 658, 678, 783
MlyI	GAGTC	4 cut(s)	171, 177, 285, 335
MmeI	TCCRAC	3 cut(s)	34, 303, 362
MnlI	CCTC	6 cut(s)	100, 199, 257, 435, 521, 723
MseI	TTAA	4 cut(s)	225, 258, 543, 554
MslI	CAYNNNNRTG	1 cut(s)	65
MspR9I	CCNGG	2 cut(s)	141, 242
MunI	CAATTG	1 cut(s)	558
MvaI	CCWGG	2 cut(s)	141, 242
NdeI	CATATG	1 cut(s)	712
NdeII	GATC	4 cut(s)	346, 510, 705, 773
NlaIII	CATG	1 cut(s)	70
PaeR7I	CTCGAG	1 cut(s)	701
PcsI	WCGNNNNNNNCGW	1 cut(s)	699
PfeI	GAWTC	2 cut(s)	334, 535
PleI	GAGTC	4 cut(s)	170, 176, 284, 334
PpsI	GAGTC	4 cut(s)	170, 176, 284, 334
PshBI	ATTAAT	1 cut(s)	258
Psp6I	CCWGG	2 cut(s)	139, 240
PspGI	CCWGG	2 cut(s)	139, 240
PsuI	RGATCY	1 cut(s)	346
RseI	CAYNNNNRTG	1 cut(s)	65
SaqAI	TTAA	4 cut(s)	225, 258, 543, 554
Sau3AI	GATC	4 cut(s)	346, 510, 705, 773
SchI	GAGTC	4 cut(s)	171, 177, 285, 335
ScrFI	CCNGG	2 cut(s)	141, 242
SduI	GDGCHC	1 cut(s)	137
SfaNI	GCATC	2 cut(s)	368, 590
Sfr274I	CTCGAG	1 cut(s)	701
SlaI	CTCGAG	1 cut(s)	701
SmiMI	CAYNNNNRTG	1 cut(s)	65
SmlI	CTYRAG	3 cut(s)	118, 418, 701
SmoI	CTYRAG	3 cut(s)	118, 418, 701
Sse9I	AATT	6 cut(s)	402, 408, 558, 658, 678, 783
SspI	AATATT	1 cut(s)	478
SspMI	CTAG	1 cut(s)	434
StyD4I	CCNGG	2 cut(s)	139, 240
StyI	CCWWGG	1 cut(s)	250
TaaI	ACNGT	4 cut(s)	355, 552, 695, 727
TaiI	ACGT	1 cut(s)	648
TaqI	TCGA	2 cut(s)	513, 702
TasI	AATT	6 cut(s)	402, 408, 558, 658, 678, 783
TfiI	GAWTC	2 cut(s)	334, 535
Tru1I	TTAA	4 cut(s)	225, 258, 543, 554
Tru9I	TTAA	4 cut(s)	225, 258, 543, 554
TspDTI	ATGAA	3 cut(s)	439, 656, 751
VspI	ATTAAT	1 cut(s)	258
XapI	RAATTY	1 cut(s)	678
XhoI	CTCGAG	1 cut(s)	701
XspI	CTAG	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.