Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005160

Physical Location & Seq

Genomic Coordinates Forward (+)

58790739 .. 58792718

Gene Structure 1980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00124500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCCACTGTGCTTGTCCAACCACCAATCCCGGCTTTCCATGCTAACATTCCTCCAATGCTCAGAACCACAAACATGGTGATAACTCCCACTTCACCCTCAACCACTCATCAAAAGACTCAAAGCTTAAGATTTGGTGAGTGTCCACCTGGGTTTAGGCCCATTTACAGAGTCAAAGTTGCAGAACAAACCTCTGGCCTAGTTGGGGATGAGACACCCACCCAGATTAAAACTGAGCTTCACCAGGCACTCCAAGGTATTAATAGAGGGATATTTGGAGTCCCATCTGCAAAGAAATCTGAGATTGAAGGTCTGGTTAAGCAGCTGGAGTCTCAGAATCCAACTCCAGATCCTACTGTGAATCTAGAAATGGTGGGTGGATGCTGGAAACTTGTGTATAGCACAATTACAATTTTAGGCTCAAGAAGAACAAAGCTAGGATTGAGGGACTTCATCTCATTGGGAGATTTCTACCAGAATATTGATATTGCTAAGGGCAAAGCAGTCAATGTGATCAAGTTCGATGTGAGAGGATTGAATCTGTTTAATGGACGGCTAACAATTGTGGCCTCCTTCAAGAAAGCATCCAAATCAAGAGTTGACATCAGCTATGAAAACTCTACAATCACTCCAGTTCAGTTGATGAACGTGTTTCGGAAAAATTATGATATTCTGCTTGGAATCTTCAATCCAGACGGTTGGCTCGAGATCACATATGTTGATGATACCTTGAGGATAGGAAGGGATGACAAAGGCAATATCTTCATATTAGAGAGATCAGAAGAAAATTTGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010236 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

265

Amino Acids

29.53

Weight (kDa)

9.16

Isoelectric Point (pI)

41.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	75 - 257	1.1e-33	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09820 AT5G09820 AT5G09820
fragaria_vesca	FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570
malus_domestica	MD15G1343200.v1.1
prunus_persica	Prupe.6G163100_v2.0.a1 Prupe.6G163100_v2.0.a1 Prupe.6G163100_v2.0.a1 Prupe.6G163100_v2.0.a1
pyrus_communis	pycom15g30310
rosa_chinensis	RchiOBHm_Chr2g0119061 RchiOBHm_Chr2g0119121
rosa_laevigata	RLG00000018446
rosa_multiflora	Rmu_sc0001653.1_g000011
rosa_roxburghii	Rroxscaffold_2G00124500
rosa_rugosa	Rorug02G0220300 Rorug02G0220400
rosa_samantha	Rh2AG278400 Rh2BG289300
rosa_wichuraiana	Rw2G022100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	344
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	787
AfiI	CCNNNNNNNGG	1 cut(s)	205
AflII	CTTAAG	1 cut(s)	127
AflIII	ACRYGT	1 cut(s)	648
AgsI	TTSAA	4 cut(s)	308, 538, 577, 688
AjnI	CCWGG	2 cut(s)	148, 243
AluBI	AGCT	5 cut(s)	126, 238, 325, 436, 609
AluI	AGCT	5 cut(s)	126, 238, 325, 436, 609
Alw26I	GTCTC	2 cut(s)	206, 336
AlwI	GGATC	1 cut(s)	344
Ama87I	CYCGRG	1 cut(s)	704
AoxI	GGCC	4 cut(s)	3, 158, 196, 567
ApeKI	GCWGC	1 cut(s)	322
ApoI	RAATTY	1 cut(s)	787
AseI	ATTAAT	1 cut(s)	261
AspS9I	GGNCC	1 cut(s)	159
AsuC2I	CCSGG	1 cut(s)	32
AsuHPI	GGTGA	4 cut(s)	87, 91, 149, 233
AvaI	CYCGRG	1 cut(s)	704
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	334
BccI	CCATC	1 cut(s)	292
BceAI	ACGGC	1 cut(s)	569
BciT130I	CCWGG	2 cut(s)	150, 245
BclI	TGATCA	1 cut(s)	513
BcnI	CCSGG	1 cut(s)	32
BcoDI	GTCTC	2 cut(s)	206, 336
BfaI	CTAG	3 cut(s)	200, 365, 437
BfrI	CTTAAG	1 cut(s)	127
BisI	GCNGC	1 cut(s)	323
BlsI	GCNGC	1 cut(s)	324
Bme1390I	CCNGG	3 cut(s)	32, 150, 245
BmeT110I	CYCGRG	1 cut(s)	704
BmgT120I	GGNCC	1 cut(s)	159
BmrFI	CCNGG	3 cut(s)	32, 150, 245
BmsI	GCATC	2 cut(s)	371, 593
BpmI	CTGGAG	3 cut(s)	330, 347, 615
Bpu10I	CCTNAGC	1 cut(s)	492
BpuEI	CTTGAG	2 cut(s)	406, 751
BpuMI	CCSGG	1 cut(s)	32
BsaJI	CCNNGG	2 cut(s)	149, 253
BsaXI	ACNNNNNCTCC	2 cut(s)	613, 643
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
Bse1I	ACTGG	1 cut(s)	632
BseBI	CCWGG	2 cut(s)	150, 245
BseDI	CCNNGG	2 cut(s)	149, 253
BseGI	GGATG	4 cut(s)	214, 386, 584, 751
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseMII	CTCAG	4 cut(s)	76, 225, 291, 347
BseNI	ACTGG	1 cut(s)	632
BseXI	GCAGC	1 cut(s)	334
BshFI	GGCC	4 cut(s)	5, 160, 198, 569
BsiHKCI	CYCGRG	1 cut(s)	704
BsiSI	CCGG	1 cut(s)	32
BslFI	GGGAC	2 cut(s)	266, 461
BslI	CCNNNNNNNGG	1 cut(s)	205
BsmAI	GTCTC	2 cut(s)	206, 336
BsmFI	GGGAC	2 cut(s)	266, 461
BsnI	GGCC	4 cut(s)	5, 160, 198, 569
BsoBI	CYCGRG	1 cut(s)	704
Bsp143I	GATC	4 cut(s)	349, 513, 708, 776
BspANI	GGCC	4 cut(s)	5, 160, 198, 569
BspCNI	CTCAG	4 cut(s)	75, 226, 292, 346
BspPI	GGATC	1 cut(s)	344
BspTI	CTTAAG	1 cut(s)	127
BsrI	ACTGG	1 cut(s)	632
BssECI	CCNNGG	2 cut(s)	149, 253
BssMI	GATC	4 cut(s)	349, 513, 708, 776
BssT1I	CCWWGG	1 cut(s)	253
Bst2UI	CCWGG	2 cut(s)	150, 245
Bst4CI	ACNGT	3 cut(s)	10, 358, 698
BstAFI	CTTAAG	1 cut(s)	127
BstDEI	CTNAG	5 cut(s)	62, 234, 300, 333, 492
BstF5I	GGATG	4 cut(s)	214, 386, 584, 751
BstKTI	GATC	4 cut(s)	352, 516, 711, 779
BstMAI	GTCTC	2 cut(s)	206, 336
BstMBI	GATC	4 cut(s)	349, 513, 708, 776
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstNI	CCWGG	2 cut(s)	150, 245
BstSCI	CCNGG	3 cut(s)	30, 148, 243
BstV1I	GCAGC	1 cut(s)	334
BstX2I	RGATCY	1 cut(s)	349
BstXI	CCANNNNNNTGG	2 cut(s)	76, 699
BstYI	RGATCY	1 cut(s)	349
BsuRI	GGCC	4 cut(s)	5, 160, 198, 569
BtsCI	GGATG	4 cut(s)	214, 386, 584, 751
BtsIMutI	CAGTG	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	159
CspCI	CAANNNNNGTGG	1 cut(s)	30
CviAII	CATG	2 cut(s)	41, 76
DdeI	CTNAG	5 cut(s)	62, 234, 300, 333, 492
DpnI	GATC	4 cut(s)	351, 515, 710, 778
DpnII	GATC	4 cut(s)	349, 513, 708, 776
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	253
Eco88I	CYCGRG	1 cut(s)	704
EcoRII	CCWGG	2 cut(s)	148, 243
EcoT14I	CCWWGG	1 cut(s)	253
ErhI	CCWWGG	1 cut(s)	253
FaeI	CATG	2 cut(s)	44, 79
FaiI	YATR	8 cut(s)	42, 77, 399, 612, 666, 715, 717, 767
FaqI	GGGAC	2 cut(s)	266, 461
FatI	CATG	2 cut(s)	40, 75
FauNDI	CATATG	1 cut(s)	715
FbaI	TGATCA	1 cut(s)	513
Fnu4HI	GCNGC	1 cut(s)	323
FokI	GGATG	4 cut(s)	221, 393, 571, 758
Fsp4HI	GCNGC	1 cut(s)	323
FspBI	CTAG	3 cut(s)	200, 365, 437
GluI	GCNGC	1 cut(s)	323
GsuI	CTGGAG	3 cut(s)	330, 347, 615
HaeIII	GGCC	4 cut(s)	5, 160, 198, 569
HapII	CCGG	1 cut(s)	32
Hin1II	CATG	2 cut(s)	44, 79
HincII	GTYRAC	1 cut(s)	601
HindII	GTYRAC	1 cut(s)	601
HindIII	AAGCTT	1 cut(s)	124
HinfI	GANTC	8 cut(s)	118, 171, 279, 329, 337, 361, 538, 681
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	4 cut(s)	87, 91, 149, 233
Hpy166II	GTNNAC	2 cut(s)	146, 601
Hpy188I	TCNGA	5 cut(s)	65, 301, 336, 657, 781
Hpy188III	TCNNGA	7 cut(s)	347, 365, 423, 577, 594, 692, 706
Hpy8I	GTNNAC	2 cut(s)	146, 601
HpyAV	CCTTC	3 cut(s)	302, 583, 735
HpyCH4III	ACNGT	3 cut(s)	10, 358, 698
HpyCH4IV	ACGT	1 cut(s)	648
HpyCH4V	TGCA	2 cut(s)	182, 290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	5 cut(s)	62, 234, 300, 333, 492
HpySE526I	ACGT	1 cut(s)	648
Hsp92II	CATG	2 cut(s)	44, 79
Ksp22I	TGATCA	1 cut(s)	513
Kzo9I	GATC	4 cut(s)	349, 513, 708, 776
Lsp1109I	GCAGC	1 cut(s)	334
LweI	GCATC	2 cut(s)	371, 593
MaeI	CTAG	3 cut(s)	200, 365, 437
MaeII	ACGT	1 cut(s)	648
MalI	GATC	4 cut(s)	351, 515, 710, 778
MboI	GATC	4 cut(s)	349, 513, 708, 776
MboII	GAAGA	4 cut(s)	438, 676, 754, 794
MfeI	CAATTG	1 cut(s)	561
MflI	RGATCY	1 cut(s)	349
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	405, 411, 561, 661, 787
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	4 cut(s)	112, 180, 288, 338
MmeI	TCCRAC	2 cut(s)	43, 365
MnlI	CCTC	8 cut(s)	63, 109, 202, 260, 438, 524, 580, 726
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	6 cut(s)	128, 228, 261, 318, 546, 796
MslI	CAYNNNNRTG	1 cut(s)	74
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	325
MspCI	CTTAAG	1 cut(s)	127
MspI	CCGG	1 cut(s)	32
MspR9I	CCNGG	3 cut(s)	32, 150, 245
MunI	CAATTG	1 cut(s)	561
MvaI	CCWGG	2 cut(s)	150, 245
MwoI	GCNNNNNNNGC	1 cut(s)	41
NciI	CCSGG	1 cut(s)	32
NdeI	CATATG	1 cut(s)	715
NdeII	GATC	4 cut(s)	349, 513, 708, 776
NlaIII	CATG	2 cut(s)	44, 79
PaeR7I	CTCGAG	1 cut(s)	704
PcsI	WCGNNNNNNNCGW	1 cut(s)	702
PfeI	GAWTC	4 cut(s)	337, 361, 538, 681
PkrI	GCNGC	1 cut(s)	324
PleI	GAGTC	4 cut(s)	112, 179, 287, 337
PpsI	GAGTC	4 cut(s)	112, 179, 287, 337
PshBI	ATTAAT	1 cut(s)	261
Psp6I	CCWGG	2 cut(s)	148, 243
PspGI	CCWGG	2 cut(s)	148, 243
PspPI	GGNCC	1 cut(s)	159
PsuI	RGATCY	1 cut(s)	349
PvuII	CAGCTG	1 cut(s)	325
RseI	CAYNNNNRTG	1 cut(s)	74
SaqAI	TTAA	6 cut(s)	128, 228, 261, 318, 546, 796
SatI	GCNGC	1 cut(s)	323
Sau3AI	GATC	4 cut(s)	349, 513, 708, 776
Sau96I	GGNCC	1 cut(s)	159
SchI	GAGTC	4 cut(s)	112, 180, 288, 338
ScrFI	CCNGG	3 cut(s)	32, 150, 245
SfaNI	GCATC	2 cut(s)	371, 593
Sfr274I	CTCGAG	1 cut(s)	704
SlaI	CTCGAG	1 cut(s)	704
SmiMI	CAYNNNNRTG	1 cut(s)	74
SmlI	CTYRAG	4 cut(s)	127, 421, 704, 730
SmoI	CTYRAG	4 cut(s)	127, 421, 704, 730
Sse9I	AATT	5 cut(s)	405, 411, 561, 661, 787
SspI	AATATT	1 cut(s)	481
SspMI	CTAG	3 cut(s)	200, 365, 437
StyD4I	CCNGG	3 cut(s)	30, 148, 243
StyI	CCWWGG	1 cut(s)	253
TaaI	ACNGT	3 cut(s)	10, 358, 698
TaiI	ACGT	1 cut(s)	651
TaqI	TCGA	2 cut(s)	522, 705
TasI	AATT	5 cut(s)	405, 411, 561, 661, 787
TfiI	GAWTC	4 cut(s)	337, 361, 538, 681
Tru1I	TTAA	6 cut(s)	128, 228, 261, 318, 546, 796
Tru9I	TTAA	6 cut(s)	128, 228, 261, 318, 546, 796
TscAI	CASTG	1 cut(s)	13
TseI	GCWGC	1 cut(s)	322
TspDTI	ATGAA	4 cut(s)	442, 627, 659, 754
TspRI	CASTG	1 cut(s)	13
Vha464I	CTTAAG	1 cut(s)	127
VspI	ATTAAT	1 cut(s)	261
XapI	RAATTY	1 cut(s)	787
XbaI	TCTAGA	1 cut(s)	364
XhoI	CTCGAG	1 cut(s)	704
XspI	CTAG	3 cut(s)	200, 365, 437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.