Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005160

Physical Location & Seq

Genomic Coordinates Forward (+)

39798924 .. 39800789

Gene Structure 1866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1343200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCCACCGTGCTTGTCCATGCAATTCCATTTCCGACAGTGCCTAGACTGAGACCCAAAAACATGGCGGCACCTGCTCGCTGTTTGGTCTCGACCGCACATCAAAGCACGAGATTTGTTGGGTTATGGCGACACACTTGCACAGTGAGATCAGTAGCAGAAGAAAGTTCCAGTTCCAGCTCCAGCTCCAGCTCCAGCTTGGACGTTGGGGATGATGAGGTTATTAAGACCCAGCTTCTGGAAGCAATCAAAGGAATCAACAGAGGCATTTTCGGAGTCCCGTCTGCGAAGAAATCTCAGATTGAAGCTCTCGTCAACCAGCTCGAGTCTCGGAATCCTACTCCAGATCCTCTTCTTAATCTACAAAAGGTGGGTGGATGCTGGAAACTTGTGTACAGCACAATTACCATTTTAGGTTCGAAACGAACAAAGCTGGGATTGCGGGACTTCATCTCCTTGGGTGATTTCTTCCAGAATATTAACATTGCCAAGGGTAAAGCAGTTAATGTGATCAAGTTCGACGTGAGAGGATTGAATCTGTTTAATGGACGGCTGACAATTGAGGCCTCCTTCAAGAAAGCATCCAATTCAAGAGTTGACATCAACTATGACAACTCCATGATCACTCCGAGTCAGTTAATGAGCGTGTTCCGGAAAAATTATGATATTCTGCTTGGGATCTTCAACCCAGAAGGATGGCTTGAGATCACATATGTTGATGATACCCTGAGAATAGGGAGGGATGATAAGGGCAACATCTTCATATTAGAGAGATCACATGAAAGTTCGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010236 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

265

Amino Acids

29.23

Weight (kDa)

9.49

Isoelectric Point (pI)

51.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	75 - 256	2.6e-34	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09820 AT5G09820 AT5G09820
fragaria_vesca	FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570
malus_domestica	MD15G1343200.v1.1
prunus_persica	Prupe.6G163100_v2.0.a1 Prupe.6G163100_v2.0.a1 Prupe.6G163100_v2.0.a1 Prupe.6G163100_v2.0.a1
pyrus_communis	pycom15g30310
rosa_chinensis	RchiOBHm_Chr2g0119061 RchiOBHm_Chr2g0119121
rosa_laevigata	RLG00000018446
rosa_multiflora	Rmu_sc0001653.1_g000011
rosa_roxburghii	Rroxscaffold_2G00124500
rosa_rugosa	Rorug02G0220300 Rorug02G0220400
rosa_samantha	Rh2AG278400 Rh2BG289300
rosa_wichuraiana	Rw2G022100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	82
Acc36I	ACCTGC	1 cut(s)	82
AccB1I	GGYRCC	1 cut(s)	70
AccB7I	CCANNNNNTGG	1 cut(s)	238
AccIII	TCCGGA	1 cut(s)	651
AciI	CCGC	3 cut(s)	68, 96, 442
AclWI	GGATC	2 cut(s)	341, 686
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	395
AfiI	CCNNNNNNNGG	1 cut(s)	238
AgsI	TTSAA	5 cut(s)	305, 535, 574, 591, 685
AjiI	CACGTC	1 cut(s)	523
AluBI	AGCT	8 cut(s)	180, 186, 192, 198, 235, 308, 322, 433
AluI	AGCT	8 cut(s)	180, 186, 192, 198, 235, 308, 322, 433
Alw26I	GTCTC	3 cut(s)	46, 94, 333
AlwI	GGATC	2 cut(s)	341, 686
AlwNI	CAGNNNCTG	1 cut(s)	238
Ama87I	CYCGRG	1 cut(s)	323
Aor13HI	TCCGGA	1 cut(s)	651
AoxI	GGCC	2 cut(s)	3, 564
AsuHPI	GGTGA	1 cut(s)	473
AsuII	TTCGAA	1 cut(s)	419
AvaI	CYCGRG	1 cut(s)	323
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	70
BauI	CACGAG	1 cut(s)	109
BccI	CCATC	1 cut(s)	690
BceAI	ACGGC	1 cut(s)	566
BcgI	CGANNNNNNTGC	2 cut(s)	120, 154
BclI	TGATCA	2 cut(s)	510, 621
BcoDI	GTCTC	3 cut(s)	46, 94, 333
BfaI	CTAG	1 cut(s)	45
BfuAI	ACCTGC	1 cut(s)	82
BisI	GCNGC	1 cut(s)	69
BlsI	GCNGC	1 cut(s)	70
BmeT110I	CYCGRG	1 cut(s)	323
BmgBI	CACGTC	1 cut(s)	523
BmiI	GGNNCC	1 cut(s)	72
BmsI	GCATC	2 cut(s)	368, 590
BpmI	CTGGAG	4 cut(s)	166, 172, 178, 327
Bpu14I	TTCGAA	1 cut(s)	419
BpuEI	CTTGAG	1 cut(s)	722
BsaI	GGTCTC	2 cut(s)	46, 94
BsaJI	CCNNGG	2 cut(s)	456, 489
BsaWI	WCCGGW	1 cut(s)	651
BsaXI	ACNNNNNCTCC	2 cut(s)	437, 467
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse1I	ACTGG	1 cut(s)	171
Bse3DI	GCAATG	1 cut(s)	483
BseAI	TCCGGA	1 cut(s)	651
BseDI	CCNNGG	2 cut(s)	456, 489
BseGI	GGATG	5 cut(s)	217, 383, 581, 701, 748
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMI	GCAATG	1 cut(s)	483
BseMII	CTCAG	3 cut(s)	41, 311, 719
BseNI	ACTGG	1 cut(s)	171
BseYI	CCCAGC	2 cut(s)	231, 433
Bsh1285I	CGRYCG	1 cut(s)	96
BshFI	GGCC	2 cut(s)	5, 566
BshNI	GGYRCC	1 cut(s)	70
BsiEI	CGRYCG	1 cut(s)	96
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	1 cut(s)	652
BslFI	GGGAC	2 cut(s)	263, 458
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmAI	GTCTC	3 cut(s)	46, 94, 333
BsmFI	GGGAC	2 cut(s)	263, 458
BsnI	GGCC	2 cut(s)	5, 566
Bso31I	GGTCTC	2 cut(s)	46, 94
BsoBI	CYCGRG	1 cut(s)	323
Bsp119I	TTCGAA	1 cut(s)	419
Bsp13I	TCCGGA	1 cut(s)	651
Bsp1407I	TGTACA	1 cut(s)	393
Bsp143I	GATC	7 cut(s)	149, 346, 510, 621, 678, 705, 773
BspACI	CCGC	3 cut(s)	68, 96, 442
BspANI	GGCC	2 cut(s)	5, 566
BspCNI	CTCAG	3 cut(s)	42, 310, 720
BspEI	TCCGGA	1 cut(s)	651
BspLI	GGNNCC	1 cut(s)	72
BspMI	ACCTGC	1 cut(s)	82
BspPI	GGATC	2 cut(s)	341, 686
BspT104I	TTCGAA	1 cut(s)	419
BspT107I	GGYRCC	1 cut(s)	70
BspTNI	GGTCTC	2 cut(s)	46, 94
BsrDI	GCAATG	1 cut(s)	483
BsrGI	TGTACA	1 cut(s)	393
BsrI	ACTGG	1 cut(s)	171
BssECI	CCNNGG	2 cut(s)	456, 489
BssMI	GATC	7 cut(s)	149, 346, 510, 621, 678, 705, 773
BssSI	CACGAG	1 cut(s)	109
BssT1I	CCWWGG	2 cut(s)	456, 489
Bst2BI	CACGAG	1 cut(s)	109
Bst4CI	ACNGT	3 cut(s)	10, 40, 145
Bst6I	CTCTTC	1 cut(s)	357
BstAUI	TGTACA	1 cut(s)	393
BstBI	TTCGAA	1 cut(s)	419
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	3 cut(s)	50, 297, 728
BstF5I	GGATG	5 cut(s)	217, 383, 581, 701, 748
BstKTI	GATC	7 cut(s)	152, 349, 513, 624, 681, 708, 776
BstMAI	GTCTC	3 cut(s)	46, 94, 333
BstMBI	GATC	7 cut(s)	149, 346, 510, 621, 678, 705, 773
BstMCI	CGRYCG	1 cut(s)	96
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 439
BstX2I	RGATCY	2 cut(s)	346, 678
BstXI	CCANNNNNNTGG	2 cut(s)	64, 696
BstYI	RGATCY	2 cut(s)	346, 678
BsuRI	GGCC	2 cut(s)	5, 566
BtrI	CACGTC	1 cut(s)	523
BtsCI	GGATG	5 cut(s)	217, 383, 581, 701, 748
BtsIMutI	CAGTG	2 cut(s)	45, 150
BveI	ACCTGC	1 cut(s)	82
Cac8I	GCNNGC	1 cut(s)	79
CaiI	CAGNNNCTG	1 cut(s)	238
Csp6I	GTAC	1 cut(s)	394
CspCI	CAANNNNNGTGG	1 cut(s)	30
CviAII	CATG	4 cut(s)	20, 64, 619, 779
CviQI	GTAC	1 cut(s)	394
DdeI	CTNAG	3 cut(s)	50, 297, 728
DpnI	GATC	7 cut(s)	151, 348, 512, 623, 680, 707, 775
DpnII	GATC	7 cut(s)	149, 346, 510, 621, 678, 705, 773
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
Eco130I	CCWWGG	2 cut(s)	456, 489
Eco147I	AGGCCT	1 cut(s)	566
Eco31I	GGTCTC	2 cut(s)	46, 94
Eco88I	CYCGRG	1 cut(s)	323
EcoT14I	CCWWGG	2 cut(s)	456, 489
ErhI	CCWWGG	2 cut(s)	456, 489
FaeI	CATG	4 cut(s)	23, 67, 622, 782
FalI	AAGNNNNNCTT	2 cut(s)	684, 716
FaqI	GGGAC	2 cut(s)	263, 458
FatI	CATG	4 cut(s)	19, 63, 618, 778
FauI	CCCGC	1 cut(s)	435
FauNDI	CATATG	1 cut(s)	712
FbaI	TGATCA	2 cut(s)	510, 621
Fnu4HI	GCNGC	1 cut(s)	69
FokI	GGATG	5 cut(s)	224, 390, 568, 708, 755
Fsp4HI	GCNGC	1 cut(s)	69
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	1 cut(s)	69
GsaI	CCCAGC	2 cut(s)	235, 437
GsuI	CTGGAG	4 cut(s)	166, 172, 178, 327
HaeIII	GGCC	2 cut(s)	5, 566
HapII	CCGG	1 cut(s)	652
Hin1II	CATG	4 cut(s)	23, 67, 622, 782
HincII	GTYRAC	2 cut(s)	316, 598
HindII	GTYRAC	2 cut(s)	316, 598
HinfI	GANTC	6 cut(s)	255, 276, 326, 334, 535, 631
HpaII	CCGG	1 cut(s)	652
HphI	GGTGA	1 cut(s)	473
Hpy166II	GTNNAC	3 cut(s)	316, 394, 598
Hpy188I	TCNGA	5 cut(s)	36, 275, 300, 333, 630
Hpy188III	TCNNGA	7 cut(s)	91, 239, 344, 472, 574, 591, 652
Hpy8I	GTNNAC	3 cut(s)	316, 394, 598
Hpy99I	CGWCG	1 cut(s)	524
HpyAV	CCTTC	2 cut(s)	580, 686
HpyCH4III	ACNGT	3 cut(s)	10, 40, 145
HpyCH4IV	ACGT	2 cut(s)	204, 522
HpyCH4V	TGCA	2 cut(s)	23, 141
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 439
HpyF3I	CTNAG	3 cut(s)	50, 297, 728
HpySE526I	ACGT	2 cut(s)	204, 522
Hsp92II	CATG	4 cut(s)	23, 67, 622, 782
Kpn2I	TCCGGA	1 cut(s)	651
Ksp22I	TGATCA	2 cut(s)	510, 621
Kzo9I	GATC	7 cut(s)	149, 346, 510, 621, 678, 705, 773
LmnI	GCTCC	3 cut(s)	185, 191, 197
LweI	GCATC	2 cut(s)	368, 590
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	2 cut(s)	204, 522
MalI	GATC	7 cut(s)	151, 348, 512, 623, 680, 707, 775
MboI	GATC	7 cut(s)	149, 346, 510, 621, 678, 705, 773
MboII	GAAGA	6 cut(s)	173, 301, 344, 460, 673, 751
MfeI	CAATTG	1 cut(s)	558
MflI	RGATCY	2 cut(s)	346, 678
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	24, 402, 558, 586, 658
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	285, 335, 640
MmeI	TCCRAC	1 cut(s)	59
MnlI	CCTC	7 cut(s)	211, 257, 360, 521, 556, 577, 732
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	651
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	7 cut(s)	225, 357, 480, 504, 543, 638, 793
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	652
MunI	CAATTG	1 cut(s)	558
MwoI	GCNNNNNNNGC	2 cut(s)	74, 439
NdeI	CATATG	1 cut(s)	712
NdeII	GATC	7 cut(s)	149, 346, 510, 621, 678, 705, 773
NlaIII	CATG	4 cut(s)	23, 67, 622, 782
NlaIV	GGNNCC	1 cut(s)	72
NspV	TTCGAA	1 cut(s)	419
PaeR7I	CTCGAG	1 cut(s)	323
PaqCI	CACCTGC	1 cut(s)	82
PceI	AGGCCT	1 cut(s)	566
PfeI	GAWTC	3 cut(s)	255, 334, 535
PflMI	CCANNNNNTGG	1 cut(s)	238
PkrI	GCNGC	1 cut(s)	70
PleI	GAGTC	3 cut(s)	284, 334, 639
PpsI	GAGTC	3 cut(s)	284, 334, 639
PspFI	CCCAGC	2 cut(s)	231, 433
PspN4I	GGNNCC	1 cut(s)	72
PspXI	VCTCGAGB	1 cut(s)	323
PstNI	CAGNNNCTG	1 cut(s)	238
PsuI	RGATCY	2 cut(s)	346, 678
RsaI	GTAC	1 cut(s)	395
RsaNI	GTAC	1 cut(s)	394
SaqAI	TTAA	7 cut(s)	225, 357, 480, 504, 543, 638, 793
SatI	GCNGC	1 cut(s)	69
Sau3AI	GATC	7 cut(s)	149, 346, 510, 621, 678, 705, 773
SchI	GAGTC	3 cut(s)	285, 335, 640
SfaNI	GCATC	2 cut(s)	368, 590
Sfr274I	CTCGAG	1 cut(s)	323
SfuI	TTCGAA	1 cut(s)	419
SlaI	CTCGAG	1 cut(s)	323
SmlI	CTYRAG	2 cut(s)	323, 701
SmoI	CTYRAG	2 cut(s)	323, 701
Sse9I	AATT	5 cut(s)	24, 402, 558, 586, 658
SseBI	AGGCCT	1 cut(s)	566
SsiI	CCGC	3 cut(s)	68, 96, 442
SspI	AATATT	1 cut(s)	478
SspMI	CTAG	1 cut(s)	45
StuI	AGGCCT	1 cut(s)	566
StyI	CCWWGG	2 cut(s)	456, 489
TaaI	ACNGT	3 cut(s)	10, 40, 145
TaiI	ACGT	2 cut(s)	207, 525
TaqI	TCGA	4 cut(s)	92, 324, 419, 519
TasI	AATT	5 cut(s)	24, 402, 558, 586, 658
TatI	WGTACW	1 cut(s)	393
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	3 cut(s)	255, 334, 535
Tru1I	TTAA	7 cut(s)	225, 357, 480, 504, 543, 638, 793
Tru9I	TTAA	7 cut(s)	225, 357, 480, 504, 543, 638, 793
TscAI	CASTG	2 cut(s)	45, 150
TspDTI	ATGAA	3 cut(s)	439, 751, 795
TspRI	CASTG	2 cut(s)	45, 150
Van91I	CCANNNNNTGG	1 cut(s)	238
XcmI	CCANNNNNNNNNTGG	1 cut(s)	196
XhoI	CTCGAG	1 cut(s)	323
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.