Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005160

Physical Location & Seq

Genomic Coordinates Reverse (-)

21278390 .. 21278659

Gene Structure 270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0220300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGTAGGGAACGAAGGTATCTTTGTCGGAATGGTGGGCAATGGAGTGACTGGAAGTGGAGGAAGAGTGACCTTAGGAGCAGCCGGCATGGTTGGGAGGGTTGGCTTTGGCAAAGAGGGGATTTGGATGCTTGGTAGTGGTGGCAGTGTGGTTTTGGGCAGAGATGGGATGGGGTTGATCGGAAATGGTGGCAATGTAGGTTTCAGCAGGGAAGGTAGGGGAGGCATTGCAACGTACCTTGGGAAGAGATGGAATTGTAGGCACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010236 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

89

Amino Acids

8.97

Weight (kDa)

10.81

Isoelectric Point (pI)

10.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09820 AT5G09820 AT5G09820
fragaria_vesca	FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570 FvH4_1g23570
malus_domestica	MD15G1343200.v1.1
prunus_persica	Prupe.6G163100_v2.0.a1 Prupe.6G163100_v2.0.a1 Prupe.6G163100_v2.0.a1 Prupe.6G163100_v2.0.a1
pyrus_communis	pycom15g30310
rosa_chinensis	RchiOBHm_Chr2g0119061 RchiOBHm_Chr2g0119121
rosa_laevigata	RLG00000018446
rosa_multiflora	Rmu_sc0001653.1_g000011
rosa_roxburghii	Rroxscaffold_2G00124500
rosa_rugosa	Rorug02G0220300 Rorug02G0220400
rosa_samantha	Rh2AG278400 Rh2BG289300
rosa_wichuraiana	Rw2G022100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	236
ApeKI	GCWGC	1 cut(s)	80
AxyI	CCTNAGG	1 cut(s)	73
BaeI	ACNNNNGTAYC	1 cut(s)	34
BbvI	GCAGC	1 cut(s)	92
BccI	CCATC	3 cut(s)	158, 163, 243
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
BmsI	GCATC	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	238
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bse118I	RCCGGY	1 cut(s)	83
Bse1I	ACTGG	2 cut(s)	55, 269
Bse21I	CCTNAGG	1 cut(s)	73
Bse3DI	GCAATG	3 cut(s)	46, 199, 225
BseDI	CCNNGG	1 cut(s)	238
BseGI	GGATG	2 cut(s)	132, 174
BseMI	GCAATG	3 cut(s)	46, 199, 225
BseNI	ACTGG	2 cut(s)	55, 269
BseXI	GCAGC	1 cut(s)	92
BsiSI	CCGG	1 cut(s)	84
Bsp143I	GATC	1 cut(s)	177
BsrDI	GCAATG	3 cut(s)	46, 199, 225
BsrFI	RCCGGY	1 cut(s)	83
BsrI	ACTGG	2 cut(s)	55, 269
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	1 cut(s)	238
BssMI	GATC	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	238
Bst6I	CTCTTC	2 cut(s)	58, 239
BstC8I	GCNNGC	1 cut(s)	85
BstDEI	CTNAG	1 cut(s)	73
BstF5I	GGATG	2 cut(s)	132, 174
BstKTI	GATC	1 cut(s)	180
BstMBI	GATC	1 cut(s)	177
BstV1I	GCAGC	1 cut(s)	92
Bsu36I	CCTNAGG	1 cut(s)	73
BtsCI	GGATG	2 cut(s)	132, 174
BtsI	GCAGTG	1 cut(s)	151
BtsIMutI	CAGTG	2 cut(s)	151, 262
Cac8I	GCNNGC	1 cut(s)	85
Cfr10I	RCCGGY	1 cut(s)	83
Csp6I	GTAC	1 cut(s)	235
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	2 cut(s)	83, 105
CviKI_1	RGCY	2 cut(s)	83, 105
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	1 cut(s)	73
DpnI	GATC	1 cut(s)	179
DpnII	GATC	1 cut(s)	177
Eam1104I	CTCTTC	2 cut(s)	58, 239
EarI	CTCTTC	2 cut(s)	58, 239
Eco130I	CCWWGG	1 cut(s)	238
Eco81I	CCTNAGG	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	238
ErhI	CCWWGG	1 cut(s)	238
FaeI	CATG	1 cut(s)	91
FaiI	YATR	1 cut(s)	89
FatI	CATG	1 cut(s)	87
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	2 cut(s)	139, 181
Fsp4HI	GCNGC	1 cut(s)	81
GluI	GCNGC	1 cut(s)	81
HapII	CCGG	1 cut(s)	84
Hin1II	CATG	1 cut(s)	91
HpaII	CCGG	1 cut(s)	84
Hpy188I	TCNGA	2 cut(s)	29, 182
HpyAV	CCTTC	2 cut(s)	8, 206
HpyCH4IV	ACGT	1 cut(s)	233
HpyCH4V	TGCA	1 cut(s)	230
HpyF3I	CTNAG	1 cut(s)	73
HpySE526I	ACGT	1 cut(s)	233
Hsp92II	CATG	1 cut(s)	91
KroI	GCCGGC	1 cut(s)	83
KroNI	GCCGGC	1 cut(s)	85
Kzo9I	GATC	1 cut(s)	177
LmnI	GCTCC	1 cut(s)	77
LpnPI	CCDG	4 cut(s)	36, 97, 193, 250
Lsp1109I	GCAGC	1 cut(s)	92
LweI	GCATC	1 cut(s)	117
MaeII	ACGT	1 cut(s)	233
MaeIII	GTNAC	2 cut(s)	46, 67
MalI	GATC	1 cut(s)	179
MboI	GATC	1 cut(s)	177
MboII	GAAGA	2 cut(s)	75, 256
MluCI	AATT	1 cut(s)	253
MmeI	TCCRAC	1 cut(s)	7
MnlI	CCTC	4 cut(s)	53, 90, 109, 215
MroNI	GCCGGC	1 cut(s)	83
MspI	CCGG	1 cut(s)	84
NaeI	GCCGGC	1 cut(s)	85
NdeII	GATC	1 cut(s)	177
NgoMIV	GCCGGC	1 cut(s)	83
NlaIII	CATG	1 cut(s)	91
NmuCI	GTSAC	2 cut(s)	46, 67
PdiI	GCCGGC	1 cut(s)	85
PkrI	GCNGC	1 cut(s)	82
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	1 cut(s)	177
SetI	ASST	6 cut(s)	19, 74, 202, 217, 236, 240
SfaNI	GCATC	1 cut(s)	117
SgeI	CNNG	6 cut(s)	63, 96, 100, 143, 220, 251
Sse9I	AATT	1 cut(s)	253
StyI	CCWWGG	1 cut(s)	238
TaiI	ACGT	1 cut(s)	236
TasI	AATT	1 cut(s)	253
TscAI	CASTG	2 cut(s)	151, 269
TseFI	GTSAC	2 cut(s)	46, 67
TseI	GCWGC	1 cut(s)	80
Tsp45I	GTSAC	2 cut(s)	46, 67
TspRI	CASTG	2 cut(s)	151, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.